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NM_015710.5(NOP53):c.482T>C (p.Leu161Pro) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 17, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004298468.1

Allele description [Variation Report for NM_015710.5(NOP53):c.482T>C (p.Leu161Pro)]

NM_015710.5(NOP53):c.482T>C (p.Leu161Pro)

Gene:
NOP53:NOP53 ribosome biogenesis factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_015710.5(NOP53):c.482T>C (p.Leu161Pro)
HGVS:
  • NC_000019.10:g.47750991T>C
  • NM_015710.5:c.482T>CMANE SELECT
  • NP_056525.2:p.Leu161Pro
  • NC_000019.9:g.48254248T>C
  • NM_015710.4:c.482T>C
Protein change:
L161P
Molecular consequence:
  • NM_015710.5:c.482T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003965635Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Mar 17, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003965635.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.482T>C (p.L161P) alteration is located in exon 4 (coding exon 4) of the GLTSCR2 gene. This alteration results from a T to C substitution at nucleotide position 482, causing the leucine (L) at amino acid position 161 to be replaced by a proline (P). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024