NM_001098536.2(USP5):c.1748T>C (p.Val583Ala) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 23, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004300180.1

Allele description [Variation Report for NM_001098536.2(USP5):c.1748T>C (p.Val583Ala)]

NM_001098536.2(USP5):c.1748T>C (p.Val583Ala)

Gene:

USP5:ubiquitin specific peptidase 5 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12p13.31

Genomic location:

Preferred name:

NM_001098536.2(USP5):c.1748T>C (p.Val583Ala)

HGVS:

NC_000012.12:g.6862544T>C
NG_011948.1:g.125T>C
NM_001098536.2:c.1748T>CMANE SELECT
NM_001382588.1:c.1622T>C
NM_001382589.1:c.1622T>C
NM_001382590.1:c.1610T>C
NM_001382591.1:c.1676T>C
NM_003481.3:c.1748T>C
NP_001092006.1:p.Val583Ala
NP_001369517.1:p.Val541Ala
NP_001369518.1:p.Val541Ala
NP_001369519.1:p.Val537Ala
NP_001369520.1:p.Val559Ala
NP_003472.2:p.Val583Ala
LRG_1126:g.125T>C
NC_000012.11:g.6971708T>C
NM_001098536.1:c.1748T>C
NR_168449.1:n.1778T>C
NR_168450.1:n.1593T>C
NR_168451.1:n.1708T>C
NR_168452.1:n.1778T>C
NR_168454.1:n.1603T>C
NR_168455.1:n.1778T>C
NR_168456.1:n.1778T>C
NR_168457.1:n.1690T>C
NR_168458.1:n.1904T>C

Protein change:

V537A

Molecular consequence:

NM_001098536.2:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001382588.1:c.1622T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001382589.1:c.1622T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001382590.1:c.1610T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001382591.1:c.1676T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_003481.3:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
NR_168449.1:n.1778T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168450.1:n.1593T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168451.1:n.1708T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168452.1:n.1778T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168454.1:n.1603T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168455.1:n.1778T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168456.1:n.1778T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168457.1:n.1690T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_168458.1:n.1904T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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hypothetical protein TVAGG3_0898410 [Trichomonas vaginalis G3]
hypothetical protein TVAGG3_0898410 [Trichomonas vaginalis G3]
gi|2275231559|gb|KAI5503245.1||gnl| AOSJJ|cds-TVAGG3_0898410

Protein
Mus musculus RIKEN cDNA 2310057M21 gene (2310057M21Rik), transcript variant 1, m...
Mus musculus RIKEN cDNA 2310057M21 gene (2310057M21Rik), transcript variant 1, mRNA
gi|1279652198|ref|NM_026655.4|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003955285	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (May 23, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003955285

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(May 23, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003955285.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1748T>C (p.V583A) alteration is located in exon 14 (coding exon 14) of the USP5 gene. This alteration results from a T to C substitution at nucleotide position 1748, causing the valine (V) at amino acid position 583 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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