NM_001001671.4(MAP3K15):c.3906G>C (p.Arg1302Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 24, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004300554.1

Allele description [Variation Report for NM_001001671.4(MAP3K15):c.3906G>C (p.Arg1302Ser)]

NM_001001671.4(MAP3K15):c.3906G>C (p.Arg1302Ser)

Genes:

MAP3K15:mitogen-activated protein kinase kinase kinase 15 [Gene - OMIM - HGNC]
PDHA1:pyruvate dehydrogenase E1 subunit alpha 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xp22.12

Genomic location:

Preferred name:

NM_001001671.4(MAP3K15):c.3906G>C (p.Arg1302Ser)

HGVS:

NC_000023.11:g.19360785C>G
NG_016781.1:g.21893C>G
NG_021184.1:g.159477G>C
NM_000284.4:c.*1132C>GMANE SELECT
NM_001001671.4:c.3906G>CMANE SELECT
NM_001173454.2:c.*1132C>G
NM_001173455.2:c.*1132C>G
NM_001173456.2:c.*1132C>G
NP_001001671.3:p.Arg1302Ser
NC_000023.10:g.19378903C>G
NM_001001671.3:c.3906G>C

Protein change:

R1302S

Molecular consequence:

NM_000284.4:c.*1132C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001173454.2:c.*1132C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001173455.2:c.*1132C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001173456.2:c.*1132C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001001671.4:c.3906G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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ribosome biogenesis protein SLX9 homolog isoform X1 [Mus musculus]
ribosome biogenesis protein SLX9 homolog isoform X1 [Mus musculus]
gi|1720359983|ref|XP_030100663.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003961282	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 24, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003961282

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 24, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003961282.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.3906G>C (p.R1302S) alteration is located in exon 29 (coding exon 29) of the MAP3K15 gene. This alteration results from a G to C substitution at nucleotide position 3906, causing the arginine (R) at amino acid position 1302 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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