NM_207363.3(NCKAP5):c.4820G>T (p.Ser1607Ile) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 28, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004303658.1

Allele description [Variation Report for NM_207363.3(NCKAP5):c.4820G>T (p.Ser1607Ile)]

NM_207363.3(NCKAP5):c.4820G>T (p.Ser1607Ile)

Gene:

NCKAP5:NCK associated protein 5 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q21.2

Genomic location:

Preferred name:

NM_207363.3(NCKAP5):c.4820G>T (p.Ser1607Ile)

HGVS:

NC_000002.12:g.132781991C>A
NM_207363.3:c.4820G>TMANE SELECT
NM_207481.4:c.1092+8032G>T
NP_997246.2:p.Ser1607Ile
NC_000002.11:g.133539564C>A
NM_207363.2:c.4820G>T

Protein change:

S1607I

Molecular consequence:

NM_207481.4:c.1092+8032G>T - intron variant - [Sequence Ontology: SO:0001627]
NM_207363.3:c.4820G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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AF4/FMR2 family member 1 isoform X5 [Homo sapiens]
AF4/FMR2 family member 1 isoform X5 [Homo sapiens]
gi|2462597276|ref|XP_054206034.1|

Protein
PREDICTED: Homo sapiens gametogenetin (GGN), transcript variant X3, mRNA
PREDICTED: Homo sapiens gametogenetin (GGN), transcript variant X3, mRNA
gi|2217319893|ref|XM_011526603.3|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003959034	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 28, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003959034

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 28, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003959034.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.4820G>T (p.S1607I) alteration is located in exon 14 (coding exon 12) of the NCKAP5 gene. This alteration results from a G to T substitution at nucleotide position 4820, causing the serine (S) at amino acid position 1607 to be replaced by an isoleucine (I). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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