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NM_015564.3(LRRTM2):c.1214T>C (p.Val405Ala) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 17, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004319490.1

Allele description [Variation Report for NM_015564.3(LRRTM2):c.1214T>C (p.Val405Ala)]

NM_015564.3(LRRTM2):c.1214T>C (p.Val405Ala)

Genes:
CTNNA1:catenin alpha 1 [Gene - OMIM - HGNC]
LRRTM2:leucine rich repeat transmembrane neuronal 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q31.2
Genomic location:
Preferred name:
NM_015564.3(LRRTM2):c.1214T>C (p.Val405Ala)
HGVS:
  • NC_000005.10:g.138873347A>G
  • NG_047029.1:g.124952A>G
  • NM_001290307.3:c.1063-12865A>G
  • NM_001290309.3:c.754-12865A>G
  • NM_001290310.3:c.694-12865A>G
  • NM_001323982.2:c.1063-12865A>G
  • NM_001323983.1:c.1063-12865A>G
  • NM_001323984.2:c.1063-12865A>G
  • NM_001323985.2:c.1063-12865A>G
  • NM_001323986.2:c.1063-12865A>G
  • NM_001903.5:c.1063-12865A>GMANE SELECT
  • NM_015564.3:c.1214T>CMANE SELECT
  • NP_056379.1:p.Val405Ala
  • NC_000005.9:g.138209036A>G
  • NM_015564.2:c.1214T>C
Protein change:
V405A
Molecular consequence:
  • NM_001290307.3:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001290309.3:c.754-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001290310.3:c.694-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001323982.2:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001323983.1:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001323984.2:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001323985.2:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001323986.2:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001903.5:c.1063-12865A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_015564.3:c.1214T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003981633Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(May 17, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003981633.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1214T>C (p.V405A) alteration is located in exon 2 (coding exon 2) of the LRRTM2 gene. This alteration results from a T to C substitution at nucleotide position 1214, causing the valine (V) at amino acid position 405 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024