NM_001377303.1(L3MBTL1):c.1060T>C (p.Cys354Arg) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 29, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004344901.1

Allele description [Variation Report for NM_001377303.1(L3MBTL1):c.1060T>C (p.Cys354Arg)]

NM_001377303.1(L3MBTL1):c.1060T>C (p.Cys354Arg)

Gene:

L3MBTL1:L3MBTL histone methyl-lysine binding protein 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20q13.12

Genomic location:

Preferred name:

NM_001377303.1(L3MBTL1):c.1060T>C (p.Cys354Arg)

HGVS:

NC_000020.11:g.43530287T>C
NG_009238.3:g.27608T>C
NM_001377303.1:c.1060T>CMANE SELECT
NM_001377306.1:c.1060T>C
NM_001377307.1:c.790T>C
NM_001377308.1:c.790T>C
NM_001377309.1:c.790T>C
NM_001377310.1:c.790T>C
NM_001377311.1:c.670T>C
NM_015478.7:c.790T>C
NM_032107.5:c.994T>C
NP_001364232.1:p.Cys354Arg
NP_001364235.1:p.Cys354Arg
NP_001364236.1:p.Cys264Arg
NP_001364237.1:p.Cys264Arg
NP_001364238.1:p.Cys264Arg
NP_001364239.1:p.Cys264Arg
NP_001364240.1:p.Cys224Arg
NP_056293.4:p.Cys264Arg
NP_115479.4:p.Cys332Arg
LRG_1049t1:c.1060T>C
LRG_1049t2:c.790T>C
LRG_1049:g.27608T>C
LRG_1049p1:p.Cys354Arg
LRG_1049p2:p.Cys264Arg
NC_000020.10:g.42158927T>C
NM_032107.4:c.994T>C
NR_165189.1:n.1233T>C
NR_165190.1:n.894T>C
NR_165191.1:n.955T>C
NR_165192.1:n.947T>C
NR_165193.1:n.894T>C
NR_165194.1:n.894T>C
NR_165195.1:n.955T>C
NR_165196.1:n.955T>C

Protein change:

C224R

Molecular consequence:

NM_001377303.1:c.1060T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377306.1:c.1060T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377307.1:c.790T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377308.1:c.790T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377309.1:c.790T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377310.1:c.790T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001377311.1:c.670T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_015478.7:c.790T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_032107.5:c.994T>C - missense variant - [Sequence Ontology: SO:0001583]
NR_165189.1:n.1233T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165190.1:n.894T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165191.1:n.955T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165192.1:n.947T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165193.1:n.894T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165194.1:n.894T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165195.1:n.955T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_165196.1:n.955T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004075884	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 29, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004075884

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 29, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004075884.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.994T>C (p.C332R) alteration is located in exon 10 (coding exon 9) of the L3MBTL1 gene. This alteration results from a T to C substitution at nucleotide position 994, causing the cysteine (C) at amino acid position 332 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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