NM_016395.4(HACD3):c.887C>T (p.Ser296Leu) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 13, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004398977.1

Allele description [Variation Report for NM_016395.4(HACD3):c.887C>T (p.Ser296Leu)]

NM_016395.4(HACD3):c.887C>T (p.Ser296Leu)

Gene:

HACD3:3-hydroxyacyl-CoA dehydratase 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q22.31

Genomic location:

Preferred name:

NM_016395.4(HACD3):c.887C>T (p.Ser296Leu)

HGVS:

NC_000015.10:g.65572241C>T
NM_001411136.1:c.536C>T
NM_016395.4:c.887C>TMANE SELECT
NP_001398065.1:p.Ser179Leu
NP_057479.2:p.Ser296Leu
NC_000015.9:g.65864579C>T
NM_016395.2:c.887C>T

Protein change:

S179L

Molecular consequence:

NM_001411136.1:c.536C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_016395.4:c.887C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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probable tRNA (uracil-O(2)-)-methyltransferase isoform X2 [Rattus norvegicus]
probable tRNA (uracil-O(2)-)-methyltransferase isoform X2 [Rattus norvegicus]
gi|2678895132|ref|XP_063129221.1|

Protein
activin receptor type-1 precursor [Homo sapiens]
activin receptor type-1 precursor [Homo sapiens]
gi|1111244444|ref|NP_001334595.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004882074	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 13, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004882074

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 13, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004882074.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.887C>T (p.S296L) alteration is located in exon 11 (coding exon 10) of the HACD3 gene. This alteration results from a C to T substitution at nucleotide position 887, causing the serine (S) at amino acid position 296 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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