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NM_001109754.4(PTPRB):c.4024G>A (p.Gly1342Arg) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 8, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004445169.1

Allele description [Variation Report for NM_001109754.4(PTPRB):c.4024G>A (p.Gly1342Arg)]

NM_001109754.4(PTPRB):c.4024G>A (p.Gly1342Arg)

Gene:
PTPRB:protein tyrosine phosphatase receptor type B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q15
Genomic location:
Preferred name:
NM_001109754.4(PTPRB):c.4024G>A (p.Gly1342Arg)
HGVS:
  • NC_000012.12:g.70562988C>T
  • NG_029940.2:g.79453G>A
  • NM_001109754.4:c.4024G>AMANE SELECT
  • NM_001206971.3:c.3100G>A
  • NM_001206972.3:c.3100G>A
  • NM_001330204.2:c.3760G>A
  • NM_002837.6:c.3370G>A
  • NP_001103224.1:p.Gly1342Arg
  • NP_001193900.1:p.Gly1034Arg
  • NP_001193901.1:p.Gly1034Arg
  • NP_001317133.1:p.Gly1254Arg
  • NP_002828.3:p.Gly1124Arg
  • NC_000012.11:g.70956768C>T
  • NM_001109754.2:c.4024G>A
Protein change:
G1034R
Molecular consequence:
  • NM_001109754.4:c.4024G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001206971.3:c.3100G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001206972.3:c.3100G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330204.2:c.3760G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002837.6:c.3370G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004936592Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Jan 8, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004936592.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024