NM_001372044.2(SHANK3):c.5323C>T (p.Pro1775Ser) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 30, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004450900.1

Allele description [Variation Report for NM_001372044.2(SHANK3):c.5323C>T (p.Pro1775Ser)]

NM_001372044.2(SHANK3):c.5323C>T (p.Pro1775Ser)

Gene:

SHANK3:SH3 and multiple ankyrin repeat domains 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

22q13.33

Genomic location:

Preferred name:

NM_001372044.2(SHANK3):c.5323C>T (p.Pro1775Ser)

HGVS:

NC_000022.11:g.50731214C>T
NG_070230.1:g.66998C>T
NM_001372044.2:c.5323C>TMANE SELECT
NM_033517.1:c.5098C>T
NP_001358973.1:p.Pro1775Ser
NP_277052.1:p.Pro1700Ser
NC_000022.10:g.51169642C>T

Protein change:

P1700S

Molecular consequence:

NM_001372044.2:c.5323C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_033517.1:c.5098C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

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Bacterial sp. 16S rRNA gene (Crater Lake isolate 12C1)
Bacterial sp. 16S rRNA gene (Crater Lake isolate 12C1)
gi|1418357|emb|X92135.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004946659	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 30, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004946659

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 30, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004946659.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.5098C>T (p.P1700S) alteration is located in exon 22 (coding exon 22) of the SHANK3 gene. This alteration results from a C to T substitution at nucleotide position 5098, causing the proline (P) at amino acid position 1700 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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