NM_152339.4(SPATA2L):c.1166G>A (p.Arg389His) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 21, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004460209.1

Allele description [Variation Report for NM_152339.4(SPATA2L):c.1166G>A (p.Arg389His)]

NM_152339.4(SPATA2L):c.1166G>A (p.Arg389His)

Gene:

SPATA2L:spermatogenesis associated 2 like [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q24.3

Genomic location:

Preferred name:

NM_152339.4(SPATA2L):c.1166G>A (p.Arg389His)

HGVS:

NC_000016.10:g.89697443C>T
NM_152339.4:c.1166G>AMANE SELECT
NP_689552.2:p.Arg389His
NC_000016.9:g.89763851C>T
NM_152339.3:c.1166G>A

Protein change:

R389H

Molecular consequence:

NM_152339.4:c.1166G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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Potassium voltage-gated channel unc-103 [Caenorhabditis elegans]
Potassium voltage-gated channel unc-103 [Caenorhabditis elegans]
gi|1845973745|ref|NP_001370239.1|

Protein
Drosophila melanogaster shibire (shi), transcript variant H, mRNA
Drosophila melanogaster shibire (shi), transcript variant H, mRNA
gi|665391669|ref|NM_001042813.2|

Nucleotide
RING-type domain-containing protein [Caenorhabditis elegans]
RING-type domain-containing protein [Caenorhabditis elegans]
gi|1734317970|ref|NP_001360419.1|

Protein
Drosophila melanogaster shibire (shi), transcript variant J, mRNA
Drosophila melanogaster shibire (shi), transcript variant J, mRNA
gi|281360945|ref|NM_001169295.1|

Nucleotide
Caenorhabditis elegans uS12 prolyl 3-hydroxylase (C17G10.1), mRNA
Caenorhabditis elegans uS12 prolyl 3-hydroxylase (C17G10.1), mRNA
gi|1972243897|ref|NM_062687.9|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004955855	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Feb 21, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004955855

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Feb 21, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004955855.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1166G>A (p.R389H) alteration is located in exon 3 (coding exon 2) of the SPATA2L gene. This alteration results from a G to A substitution at nucleotide position 1166, causing the arginine (R) at amino acid position 389 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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