NM_175039.4(ST6GALNAC4):c.241A>G (p.Ser81Gly) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 2, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004463091.1

Allele description [Variation Report for NM_175039.4(ST6GALNAC4):c.241A>G (p.Ser81Gly)]

NM_175039.4(ST6GALNAC4):c.241A>G (p.Ser81Gly)

Genes:

ST6GALNAC4:ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Gene - OMIM - HGNC]
ST6GALNAC4-ST6GALNAC6-AK1:ST6GALNAC4-ST6GALNAC6-AK1 readthrough [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

9q34.11

Genomic location:

Preferred name:

NM_175039.4(ST6GALNAC4):c.241A>G (p.Ser81Gly)

HGVS:

NC_000009.12:g.127912638T>C
NM_175039.4:c.241A>GMANE SELECT
NM_175040.4:c.-12A>G
NP_778204.1:p.Ser81Gly
NC_000009.11:g.130674917T>C
NM_175039.3:c.241A>G
NR_174624.1:n.445A>G
NR_174625.1:n.532A>G

Protein change:

S81G

Molecular consequence:

NM_175040.4:c.-12A>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_175039.4:c.241A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_174624.1:n.445A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_174625.1:n.532A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

SH3 and PX domain-containing 3-like protein, partial [Zenion hololepis]
SH3 and PX domain-containing 3-like protein, partial [Zenion hololepis]
gi|1381325724|gb|AWC09110.1|

Protein
pleiomorphic adenoma protein-like 2, partial [Zenion sp. ASIZP 0910704]
pleiomorphic adenoma protein-like 2, partial [Zenion sp. ASIZP 0910704]
gi|1381325580|gb|AWC09038.1|

Protein
Terrabacteria group 16S ribosomal RNA gene, partial sequence.
Terrabacteria group 16S ribosomal RNA gene, partial sequence.
PopSet: 1489024353

PopSet
Bacteria 16S ribosomal RNA gene, partial sequence.
Bacteria 16S ribosomal RNA gene, partial sequence.
PopSet: 1173245856

PopSet

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004959038	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 2, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004959038

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 2, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004959038.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.241A>G (p.S81G) alteration is located in exon 4 (coding exon 3) of the ST6GALNAC4 gene. This alteration results from a A to G substitution at nucleotide position 241, causing the serine (S) at amino acid position 81 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

ClinVar

Relating variation to medicine