NM_198992.4(SYT10):c.37T>A (p.Cys13Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 20, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004463869.1

Allele description [Variation Report for NM_198992.4(SYT10):c.37T>A (p.Cys13Ser)]

NM_198992.4(SYT10):c.37T>A (p.Cys13Ser)

Gene:

SYT10:synaptotagmin 10 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12p11.1

Genomic location:

Preferred name:

NM_198992.4(SYT10):c.37T>A (p.Cys13Ser)

HGVS:

NC_000012.12:g.33439486A>T
NG_125463.1:g.857A>T
NM_198992.4:c.37T>AMANE SELECT
NP_945343.1:p.Cys13Ser
NC_000012.11:g.33592421A>T
NM_198992.3:c.37T>A

Protein change:

C13S

Molecular consequence:

NM_198992.4:c.37T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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Homo sapiens ras homolog family member H (RHOH), transcript variant 12, mRNA
Homo sapiens ras homolog family member H (RHOH), transcript variant 12, mRNA
gi|1890333964|ref|NM_001278369.2|

Nucleotide
PREDICTED: Homo sapiens oxidation resistance 1 (OXR1), transcript variant X2, mR...
PREDICTED: Homo sapiens oxidation resistance 1 (OXR1), transcript variant X2, mRNA
gi|2217372375|ref|XM_006716595.3|

Nucleotide
MAG: hypothetical protein AMXMBFR48_01890 [Ignavibacteriales bacterium]
MAG: hypothetical protein AMXMBFR48_01890 [Ignavibacteriales bacterium]
gi|2804181464|dbj|GMU84947.1||gnl|W UV|GMU84947

Protein
RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector su...
RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta
gi|416680|sp|Q03235.1|ATPB_PECFR

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004961663	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 20, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004961663

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 20, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004961663.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.37T>A (p.C13S) alteration is located in exon 1 (coding exon 1) of the SYT10 gene. This alteration results from a T to A substitution at nucleotide position 37, causing the cysteine (C) at amino acid position 13 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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