NM_006819.3(STIP1):c.502A>T (p.Thr168Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 5, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004465614.1

Allele description [Variation Report for NM_006819.3(STIP1):c.502A>T (p.Thr168Ser)]

NM_006819.3(STIP1):c.502A>T (p.Thr168Ser)

Gene:

STIP1:stress induced phosphoprotein 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q13.1

Genomic location:

Preferred name:

NM_006819.3(STIP1):c.502A>T (p.Thr168Ser)

HGVS:

NC_000011.10:g.64194619A>T
NM_001282652.2:c.643A>T
NM_001282653.2:c.430A>T
NM_006819.3:c.502A>TMANE SELECT
NP_001269581.1:p.Thr215Ser
NP_001269582.1:p.Thr144Ser
NP_006810.1:p.Thr168Ser
NC_000011.9:g.63962091A>T
NM_006819.2:c.502A>T

Protein change:

T144S

Molecular consequence:

NM_001282652.2:c.643A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001282653.2:c.430A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_006819.3:c.502A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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RecName: Full=Secreted Ly-6/uPAR-related protein 1; Short=SLURP-1; AltName: Full...
RecName: Full=Secreted Ly-6/uPAR-related protein 1; Short=SLURP-1; AltName: Full=ARS component B; AltName: Full=ARS(component B)-81/S; AltName: Full=Anti-neoplastic urinary protein; Short=ANUP; Flags: Precursor
gi|3287957|sp|P55000.2|SLUR1_HUMAN

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004958837	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 5, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004958837

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 5, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004958837.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.502A>T (p.T168S) alteration is located in exon 4 (coding exon 4) of the STIP1 gene. This alteration results from a A to T substitution at nucleotide position 502, causing the threonine (T) at amino acid position 168 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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