NM_025264.5(THUMPD2):c.1241G>A (p.Arg414Lys) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 24, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004467102.1

Allele description [Variation Report for NM_025264.5(THUMPD2):c.1241G>A (p.Arg414Lys)]

NM_025264.5(THUMPD2):c.1241G>A (p.Arg414Lys)

Gene:

THUMPD2:THUMP domain containing 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p22.1

Genomic location:

Preferred name:

NM_025264.5(THUMPD2):c.1241G>A (p.Arg414Lys)

HGVS:

NC_000002.12:g.39737006C>T
NM_001321468.1:c.*91G>A
NM_001321469.1:c.962G>A
NM_001321470.1:c.914G>A
NM_001321474.1:c.*91G>A
NM_001321475.1:c.*91G>A
NM_001321477.1:c.539G>A
NM_001321478.1:c.539G>A
NM_001321479.1:c.539G>A
NM_001321480.1:c.539G>A
NM_001321481.1:c.539G>A
NM_025264.5:c.1241G>AMANE SELECT
NP_001308398.1:p.Arg321Lys
NP_001308399.1:p.Arg305Lys
NP_001308406.1:p.Arg180Lys
NP_001308407.1:p.Arg180Lys
NP_001308408.1:p.Arg180Lys
NP_001308409.1:p.Arg180Lys
NP_001308410.1:p.Arg180Lys
NP_079540.2:p.Arg414Lys
NC_000002.11:g.39964146C>T
NM_025264.4:c.1241G>A
NR_028102.1:n.1399G>A
NR_135659.1:n.1690G>A
NR_135660.1:n.1592G>A
NR_135661.1:n.1680G>A
NR_135662.1:n.1389G>A
NR_135663.1:n.989G>A
NR_135664.1:n.1582G>A

Protein change:

R180K

Molecular consequence:

NM_001321468.1:c.*91G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001321474.1:c.*91G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001321475.1:c.*91G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001321469.1:c.962G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321470.1:c.914G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321477.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321478.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321479.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321480.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001321481.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_025264.5:c.1241G>A - missense variant - [Sequence Ontology: SO:0001583]
NR_028102.1:n.1399G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135659.1:n.1690G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135660.1:n.1592G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135661.1:n.1680G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135662.1:n.1389G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135663.1:n.989G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_135664.1:n.1582G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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cytochrome oxidase subunit 1, partial (mitochondrion) [Diapriidae sp. BIOUG22545...
cytochrome oxidase subunit 1, partial (mitochondrion) [Diapriidae sp. BIOUG22545-D08]
gi|1402383034|gb|AWU65070.1|

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004965906	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jan 24, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004965906

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jan 24, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004965906.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1241G>A (p.R414K) alteration is located in exon 10 (coding exon 10) of the THUMPD2 gene. This alteration results from a G to A substitution at nucleotide position 1241, causing the arginine (R) at amino acid position 414 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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