NM_018257.3(PCMTD2):c.911A>G (p.Asn304Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 14, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004500774.1

Allele description [Variation Report for NM_018257.3(PCMTD2):c.911A>G (p.Asn304Ser)]

NM_018257.3(PCMTD2):c.911A>G (p.Asn304Ser)

Gene:

PCMTD2:protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20q13.33

Genomic location:

Preferred name:

NM_018257.3(PCMTD2):c.911A>G (p.Asn304Ser)

HGVS:

NC_000020.11:g.64273425A>G
NM_001104925.2:c.830A>G
NM_018257.3:c.911A>GMANE SELECT
NP_001098395.1:p.Asn277Ser
NP_060727.2:p.Asn304Ser
NC_000020.10:g.62904778A>G
NM_018257.2:c.911A>G

Protein change:

N277S

Molecular consequence:

NM_001104925.2:c.830A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_018257.3:c.911A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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Arthrobacter sp. B6 Scaffold1_5, whole genome shotgun sequence
Arthrobacter sp. B6 Scaffold1_5, whole genome shotgun sequence
gi|1036671769|gb|LQAP01000005.1||gn :LQAP01|Scaffold1_5

Nucleotide
N-acetylglucosamine-6-phosphate deacetylase isoform X3 [Homo sapiens]
N-acetylglucosamine-6-phosphate deacetylase isoform X3 [Homo sapiens]
gi|1034594729|ref|XP_016878756.1|

Protein
N-acetylglucosamine-6-phosphate deacetylase isoform X2 [Homo sapiens]
N-acetylglucosamine-6-phosphate deacetylase isoform X2 [Homo sapiens]
gi|2462549222|ref|XP_054236404.1|

Protein
AP-1 complex subunit gamma-like 2 isoform X4 [Homo sapiens]
AP-1 complex subunit gamma-like 2 isoform X4 [Homo sapiens]
gi|2462541927|ref|XP_054232860.1|

Protein
LOC107986455 [Homo sapiens]
LOC107986455 [Homo sapiens]
Gene ID:107986455

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005002848	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 14, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005002848

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 14, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005002848.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.911A>G (p.N304S) alteration is located in exon 6 (coding exon 5) of the PCMTD2 gene. This alteration results from a A to G substitution at nucleotide position 911, causing the asparagine (N) at amino acid position 304 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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