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NM_006793.5(PRDX3):c.539G>A (p.Gly180Asp) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 10, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004512892.1

Allele description [Variation Report for NM_006793.5(PRDX3):c.539G>A (p.Gly180Asp)]

NM_006793.5(PRDX3):c.539G>A (p.Gly180Asp)

Gene:
PRDX3:peroxiredoxin 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q26.11
Genomic location:
Preferred name:
NM_006793.5(PRDX3):c.539G>A (p.Gly180Asp)
Other names:
p.G180D
HGVS:
  • NC_000010.11:g.119172394C>T
  • NM_001302272.2:c.539G>A
  • NM_006793.4:c.539G>A
  • NM_006793.5:c.539G>AMANE SELECT
  • NP_001289201.1:p.Gly180Asp
  • NP_006784.1:p.Gly180Asp
  • NC_000010.10:g.120931906C>T
  • NM_006793.2:c.539G>A
  • NR_126102.2:n.428G>A
  • NR_126103.2:n.286G>A
  • NR_126105.2:n.278G>A
Protein change:
G180D
Molecular consequence:
  • NM_001302272.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006793.5:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_126102.2:n.428G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_126103.2:n.286G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_126105.2:n.278G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005012469Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 10, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005012469.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.539G>A (p.G180D) alteration is located in exon 5 (coding exon 5) of the PRDX3 gene. This alteration results from a G to A substitution at nucleotide position 539, causing the glycine (G) at amino acid position 180 to be replaced by an aspartic acid (D). This variant was not reported in population-based cohorts in the Genome Aggregation Database (gnomAD). This amino acid position is highly conserved in available vertebrate species. This alteration is predicted to be deleterious by in silico analysis. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024