NM_000492.4(CFTR):c.3916C>T (p.Pro1306Ser) AND Cystic fibrosis

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 6, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004518618.1

Allele description [Variation Report for NM_000492.4(CFTR):c.3916C>T (p.Pro1306Ser)]

NM_000492.4(CFTR):c.3916C>T (p.Pro1306Ser)

Gene:

CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q31.2

Genomic location:

Preferred name:

NM_000492.4(CFTR):c.3916C>T (p.Pro1306Ser)

HGVS:

NC_000007.14:g.117652884C>T
NG_016465.4:g.192101C>T
NM_000492.4:c.3916C>TMANE SELECT
NP_000483.3:p.Pro1306Ser
NP_000483.3:p.Pro1306Ser
LRG_663t1:c.3916C>T
LRG_663:g.192101C>T
LRG_663p1:p.Pro1306Ser
NC_000007.13:g.117292938C>T
NM_000492.3:c.3916C>T

Protein change:

P1306S

Molecular consequence:

NM_000492.4:c.3916C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cystic fibrosis (CF)
Synonyms:: Mucoviscidosis
Identifiers:: MONDO: MONDO:0009061; MedGen: C0010674; Orphanet: 586; OMIM: 219700

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protein Csi1 [Schizosaccharomyces pombe]
protein Csi1 [Schizosaccharomyces pombe]
gi|19113235|ref|NP_596443.1|

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005035956	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 6, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005035956

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 6, 2024)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005035956.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.P1306S variant (also known as c.3916C>T), located in coding exon 24 of the CFTR gene, results from a C to T substitution at nucleotide position 3916. The proline at codon 1306 is replaced by serine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on the available evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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