U.S. flag

An official website of the United States government

NC_000006.11:g.(?_137143759)_(138202456_?)dup AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 15, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004578841.1

Allele description

NC_000006.11:g.(?_137143759)_(138202456_?)dup

Genes:
  • TNFAIP3:TNF alpha induced protein 3 [Gene - OMIM - HGNC]
  • IFNGR1:interferon gamma receptor 1 [Gene - OMIM - HGNC]
  • IL20RA:interleukin 20 receptor subunit alpha [Gene - OMIM - HGNC]
  • IL22RA2:interleukin 22 receptor subunit alpha 2 [Gene - OMIM - HGNC]
  • LINC02539:long intergenic non-protein coding RNA 2539 [Gene - HGNC]
  • OLIG3:oligodendrocyte transcription factor 3 [Gene - OMIM - HGNC]
  • PEX7:peroxisomal biogenesis factor 7 [Gene - OMIM - HGNC]
  • SLC35D3:solute carrier family 35 member D3 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
6q23.3
Genomic location:
Chr6: 137143759 - 138202456 (on Assembly GRCh37)
Preferred name:
NC_000006.11:g.(?_137143759)_(138202456_?)dup
HGVS:
NC_000006.11:g.(?_137143759)_(138202456_?)dup

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005067579Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Nov 15, 2023) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV005067579.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

A copy number gain of the genomic region encompassing the full coding sequence of the TNFAIP3 gene has been identified. The boundaries of this event are unknown as they extend beyond the assayed region for this gene and therefore may encompass additional genes. As the precise location of this event is unknown, it may be in tandem or it may be located elsewhere in the genome. This variant has not been reported in the literature in individuals affected with TNFAIP3-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 7, 2024