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NM_006164.5(NFE2L2):c.160C>T (p.Leu54Phe) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 19, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004636866.1

Allele description [Variation Report for NM_006164.5(NFE2L2):c.160C>T (p.Leu54Phe)]

NM_006164.5(NFE2L2):c.160C>T (p.Leu54Phe)

Gene:
NFE2L2:NFE2 like bZIP transcription factor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q31.2
Genomic location:
Preferred name:
NM_006164.5(NFE2L2):c.160C>T (p.Leu54Phe)
HGVS:
  • NC_000002.12:g.177234157G>A
  • NM_001145412.3:c.112C>T
  • NM_001145413.3:c.112C>T
  • NM_001313900.1:c.112C>T
  • NM_001313901.1:c.112C>T
  • NM_001313902.2:c.160C>T
  • NM_001313903.2:c.93+67C>T
  • NM_001313904.1:c.-70C>T
  • NM_006164.3:c.160C>T
  • NM_006164.5:c.160C>TMANE SELECT
  • NP_001138884.1:p.Leu38Phe
  • NP_001138885.1:p.Leu38Phe
  • NP_001300829.1:p.Leu38Phe
  • NP_001300830.1:p.Leu38Phe
  • NP_001300831.1:p.Leu54Phe
  • NP_006155.2:p.Leu54Phe
  • NC_000002.11:g.178098885G>A
Protein change:
L38F
Molecular consequence:
  • NM_001313904.1:c.-70C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001313903.2:c.93+67C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001145412.3:c.112C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001145413.3:c.112C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001313900.1:c.112C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001313901.1:c.112C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001313902.2:c.160C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006164.5:c.160C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

Recent activity

  • zinc finger protein 185 isoform X12 [Homo sapiens]
    zinc finger protein 185 isoform X12 [Homo sapiens]
    gi|1034675239|ref|XP_016885319.1|
    Protein
  • Rpl15-ps1 ribosomal protein L15, pseudogene 1 [Rattus norvegicus]
    Rpl15-ps1 ribosomal protein L15, pseudogene 1 [Rattus norvegicus]
    Gene ID:100909895
    Gene
  • Peripheral Nervous System Neoplasms
    Peripheral Nervous System Neoplasms
    Neoplasms which arise from peripheral nerve tissue. This includes NEUROFIBROMAS; SCHWANNOMAS; GRANULAR CELL TUMORS; and malignant peripheral NERVE SHEATH NEOPLASMS. (From DeVi...<br/>Year introduced: 2000(1966)
    MeSH
  • Peripheral Nervous System Diseases
    Peripheral Nervous System Diseases
    Diseases of the peripheral nerves external to the brain and spinal cord, which includes diseases of the nerve roots, ganglia, plexi, autonomic nerves, sensory nerves, and moto...<br/>Year introduced: 1994
    MeSH
  • Operator Regions, Genetic
    Operator Regions, Genetic
    The regulatory elements of an OPERON to which activators or repressors bind thereby effecting the transcription of GENES in the operon.<br/>Year introduced: 2009 (1986)
    MeSH

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005143765Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Apr 19, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005143765.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.160C>T (p.L54F) alteration is located in exon 2 (coding exon 2) of the NFE2L2 gene. This alteration results from a C to T substitution at nucleotide position 160, causing the leucine (L) at amino acid position 54 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024