NM_152339.4(SPATA2L):c.1018G>A (p.Gly340Arg) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 13, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004672813.1

Allele description [Variation Report for NM_152339.4(SPATA2L):c.1018G>A (p.Gly340Arg)]

NM_152339.4(SPATA2L):c.1018G>A (p.Gly340Arg)

Gene:

SPATA2L:spermatogenesis associated 2 like [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q24.3

Genomic location:

Preferred name:

NM_152339.4(SPATA2L):c.1018G>A (p.Gly340Arg)

HGVS:

NC_000016.10:g.89697591C>T
NM_152339.4:c.1018G>AMANE SELECT
NP_689552.2:p.Gly340Arg
NC_000016.9:g.89763999C>T
NM_152339.3:c.1018G>A

Protein change:

G340R

Molecular consequence:

NM_152339.4:c.1018G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

RNA helicase [Caenorhabditis elegans]
RNA helicase [Caenorhabditis elegans]
gi|25148203|ref|NP_740966.1|

Protein
Histone-lysine N-methyltransferase, H3 lysine-79 specific [Caenorhabditis elegan...
Histone-lysine N-methyltransferase, H3 lysine-79 specific [Caenorhabditis elegans]
gi|71994293|ref|NP_740808.2|

Protein
Caenorhabditis elegans Plasma membrane proteolipid 3 (T23B3.2), mRNA
Caenorhabditis elegans Plasma membrane proteolipid 3 (T23B3.2), mRNA
gi|1734317588|ref|NM_059521.6|

Nucleotide
Neuropeptide-Like Protein [Caenorhabditis elegans]
Neuropeptide-Like Protein [Caenorhabditis elegans]
gi|17551036|ref|NP_509015.1|

Protein
Pseudomonas sp. 8D45 16S ribosomal RNA gene, partial sequence
Pseudomonas sp. 8D45 16S ribosomal RNA gene, partial sequence
gi|298497554|gb|GU932964.1|

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005169389	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 13, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005169389

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 13, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005169389.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1018G>A (p.G340R) alteration is located in exon 3 (coding exon 2) of the SPATA2L gene. This alteration results from a G to A substitution at nucleotide position 1018, causing the glycine (G) at amino acid position 340 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

ClinVar

Relating variation to medicine