NM_182522.5(TAFA4):c.326C>T (p.Pro109Leu) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 14, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004681928.1

Allele description [Variation Report for NM_182522.5(TAFA4):c.326C>T (p.Pro109Leu)]

NM_182522.5(TAFA4):c.326C>T (p.Pro109Leu)

Gene:

TAFA4:TAFA chemokine like family member 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p14.1

Genomic location:

Preferred name:

NM_182522.5(TAFA4):c.326C>T (p.Pro109Leu)

HGVS:

NC_000003.12:g.68739160G>A
NM_001005527.3:c.326C>T
NM_182522.5:c.326C>TMANE SELECT
NP_001005527.1:p.Pro109Leu
NP_872328.1:p.Pro109Leu
NC_000003.11:g.68788311G>A
NM_182522.3:c.326C>T

Protein change:

P109L

Molecular consequence:

NM_001005527.3:c.326C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_182522.5:c.326C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Lamproderma scintillans small subunit ribosomal RNA gene, partial sequence
Lamproderma scintillans small subunit ribosomal RNA gene, partial sequence
gi|1777432662|gb|MN722603.1|

Nucleotide
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4...
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930529A19 product:hypothetical protein, full insert sequence
gi|12854461|dbj|AK015929.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005167804	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (May 14, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005167804

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(May 14, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005167804.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.326C>T (p.P109L) alteration is located in exon 5 (coding exon 4) of the FAM19A4 gene. This alteration results from a C to T substitution at nucleotide position 326, causing the proline (P) at amino acid position 109 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

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