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NM_001395002.1(MAP4K4):c.4055G>A (p.Cys1352Tyr) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 11, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004726181.1

Allele description [Variation Report for NM_001395002.1(MAP4K4):c.4055G>A (p.Cys1352Tyr)]

NM_001395002.1(MAP4K4):c.4055G>A (p.Cys1352Tyr)

Gene:
MAP4K4:mitogen-activated protein kinase kinase kinase kinase 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q11.2
Genomic location:
Preferred name:
NM_001395002.1(MAP4K4):c.4055G>A (p.Cys1352Tyr)
HGVS:
  • NC_000002.12:g.101888919G>A
  • NM_001242559.2:c.3620G>A
  • NM_001242560.2:c.3608G>A
  • NM_001384476.1:c.3698G>A
  • NM_001384477.1:c.3887G>A
  • NM_001384478.1:c.3377G>A
  • NM_001384481.1:c.3839G>A
  • NM_001384482.1:c.3368G>A
  • NM_001384483.1:c.3650G>A
  • NM_001384484.1:c.3701G>A
  • NM_001384485.1:c.3725G>A
  • NM_001384486.1:c.3824G>A
  • NM_001384487.1:c.3791G>A
  • NM_001384488.1:c.3821G>A
  • NM_001384490.1:c.3470G>A
  • NM_001384491.1:c.3605G>A
  • NM_001384492.1:c.3959G>A
  • NM_001384493.1:c.3893G>A
  • NM_001384494.1:c.3467G>A
  • NM_001384495.1:c.3569G>A
  • NM_001384496.1:c.3677G>A
  • NM_001384497.1:c.4046G>A
  • NM_001384506.1:c.3863G>A
  • NM_001384507.1:c.3632G>A
  • NM_001384508.1:c.3695G>A
  • NM_001384509.1:c.3788G>A
  • NM_001384520.1:c.3761G>A
  • NM_001384543.1:c.3770G>A
  • NM_001384548.1:c.3806G>A
  • NM_001384549.1:c.3542G>A
  • NM_001384550.1:c.3587G>A
  • NM_001384551.1:c.3512G>A
  • NM_001384552.1:c.3671G>A
  • NM_001384553.1:c.3860G>A
  • NM_001384554.1:c.3596G>A
  • NM_001384555.1:c.3866G>A
  • NM_001384556.1:c.3665G>A
  • NM_001384557.1:c.3503G>A
  • NM_001384558.1:c.3581G>A
  • NM_001384559.1:c.3539G>A
  • NM_001384560.1:c.3434G>A
  • NM_001384561.1:c.3350G>A
  • NM_001384562.1:c.3668G>A
  • NM_001384563.1:c.3857G>A
  • NM_001384564.1:c.3926G>A
  • NM_001384567.1:c.3773G>A
  • NM_001384572.1:c.3674G>A
  • NM_001384579.1:c.3605G>A
  • NM_001395002.1:c.4055G>AMANE SELECT
  • NM_004834.5:c.3398G>A
  • NM_145686.4:c.3722G>A
  • NM_145687.4:c.3539G>A
  • NP_001229488.1:p.Cys1207Tyr
  • NP_001229489.1:p.Cys1203Tyr
  • NP_001371405.1:p.Cys1233Tyr
  • NP_001371406.1:p.Cys1296Tyr
  • NP_001371407.1:p.Cys1126Tyr
  • NP_001371410.1:p.Cys1280Tyr
  • NP_001371411.1:p.Cys1123Tyr
  • NP_001371412.1:p.Cys1217Tyr
  • NP_001371413.1:p.Cys1234Tyr
  • NP_001371414.1:p.Cys1242Tyr
  • NP_001371415.1:p.Cys1275Tyr
  • NP_001371416.1:p.Cys1264Tyr
  • NP_001371417.1:p.Cys1274Tyr
  • NP_001371419.1:p.Cys1157Tyr
  • NP_001371420.1:p.Cys1202Tyr
  • NP_001371421.1:p.Cys1320Tyr
  • NP_001371422.1:p.Cys1298Tyr
  • NP_001371423.1:p.Cys1156Tyr
  • NP_001371424.1:p.Cys1190Tyr
  • NP_001371425.1:p.Cys1226Tyr
  • NP_001371426.1:p.Cys1349Tyr
  • NP_001371435.1:p.Cys1288Tyr
  • NP_001371436.1:p.Cys1211Tyr
  • NP_001371437.1:p.Cys1232Tyr
  • NP_001371438.1:p.Cys1263Tyr
  • NP_001371449.1:p.Cys1254Tyr
  • NP_001371472.1:p.Cys1257Tyr
  • NP_001371477.1:p.Cys1269Tyr
  • NP_001371478.1:p.Cys1181Tyr
  • NP_001371479.1:p.Cys1196Tyr
  • NP_001371480.1:p.Cys1171Tyr
  • NP_001371481.1:p.Cys1224Tyr
  • NP_001371482.1:p.Cys1287Tyr
  • NP_001371483.1:p.Cys1199Tyr
  • NP_001371484.1:p.Cys1289Tyr
  • NP_001371485.1:p.Cys1222Tyr
  • NP_001371486.1:p.Cys1168Tyr
  • NP_001371487.1:p.Cys1194Tyr
  • NP_001371488.1:p.Cys1180Tyr
  • NP_001371489.1:p.Cys1145Tyr
  • NP_001371490.1:p.Cys1117Tyr
  • NP_001371491.1:p.Cys1223Tyr
  • NP_001371492.1:p.Cys1286Tyr
  • NP_001371493.1:p.Cys1309Tyr
  • NP_001371496.1:p.Cys1258Tyr
  • NP_001371501.1:p.Cys1225Tyr
  • NP_001371508.1:p.Cys1202Tyr
  • NP_001381931.1:p.Cys1352Tyr
  • NP_004825.3:p.Cys1133Tyr
  • NP_663719.2:p.Cys1241Tyr
  • NP_663720.1:p.Cys1180Tyr
  • NC_000002.11:g.102505381G>A
  • NM_145686.3:c.3722G>A
  • NR_169279.1:n.4020G>A
  • NR_169280.1:n.4095G>A
  • NR_169281.1:n.3903G>A
  • NR_169282.1:n.3456G>A
Protein change:
C1117Y
Molecular consequence:
  • NM_001242559.2:c.3620G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001242560.2:c.3608G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384476.1:c.3698G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384477.1:c.3887G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384478.1:c.3377G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384481.1:c.3839G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384482.1:c.3368G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384483.1:c.3650G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384484.1:c.3701G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384485.1:c.3725G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384486.1:c.3824G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384487.1:c.3791G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384488.1:c.3821G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384490.1:c.3470G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384491.1:c.3605G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384492.1:c.3959G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384493.1:c.3893G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384494.1:c.3467G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384495.1:c.3569G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384496.1:c.3677G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384497.1:c.4046G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384506.1:c.3863G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384507.1:c.3632G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384508.1:c.3695G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384509.1:c.3788G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384520.1:c.3761G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384543.1:c.3770G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384548.1:c.3806G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384549.1:c.3542G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384550.1:c.3587G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384551.1:c.3512G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384552.1:c.3671G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384553.1:c.3860G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384554.1:c.3596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384555.1:c.3866G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384556.1:c.3665G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384557.1:c.3503G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384558.1:c.3581G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384559.1:c.3539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384560.1:c.3434G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384561.1:c.3350G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384562.1:c.3668G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384563.1:c.3857G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384564.1:c.3926G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384567.1:c.3773G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384572.1:c.3674G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384579.1:c.3605G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001395002.1:c.4055G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004834.5:c.3398G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_145686.4:c.3722G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_145687.4:c.3539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_169279.1:n.4020G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_169280.1:n.4095G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_169281.1:n.3903G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_169282.1:n.3456G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005334723GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(May 11, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV005334723.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; Variants in candidate genes are classified as variants of uncertain significance in accordance with ACMG guidelines (Richards et al., 2015)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024