The c.1687C>T (p.P563S) alteration is located in exon 13 (coding exon 9) of the SORBS2 gene. This alteration results from a C to T substitution at nucleotide position 1687, causing the proline (P) at amino acid position 563 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
ClinVar Genomic variation as it relates to human health
NM_001395207.1(SORBS2):c.2287C>T (p.Pro763Ser)
Germline
Classification
Help
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
(1)
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Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
Uncertain significance
1
criteria provided, single submitter
Somatic
No data submitted for somatic clinical impact
Somatic
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001395207.1(SORBS2):c.2287C>T (p.Pro763Ser)
Variation ID: 3167497 Accession: VCV003167497.1
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 4q35.1 4: 185623730 (GRCh38) [ NCBI UCSC ] 4: 186544884 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline May 1, 2024 May 1, 2024 Mar 1, 2024 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001395207.1:c.2287C>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001382136.1:p.Pro763Ser missense NM_001145670.2:c.1135+3102C>T intron variant NM_001145671.3:c.1396+3102C>T intron variant NM_001145672.2:c.1186+3102C>T intron variant NM_001145673.3:c.1675+3102C>T intron variant NM_001145674.3:c.1399C>T NP_001139146.1:p.Pro467Ser missense NM_001145675.3:c.679+3102C>T intron variant NM_001270771.3:c.1987C>T NP_001257700.1:p.Pro663Ser missense NM_001394245.1:c.2245C>T NP_001381174.1:p.Pro749Ser missense NM_001394246.1:c.2188C>T NP_001381175.1:p.Pro730Ser missense NM_001394247.1:c.2188C>T NP_001381176.1:p.Pro730Ser missense NM_001394248.1:c.2119C>T NP_001381177.1:p.Pro707Ser missense NM_001394249.1:c.2119C>T NP_001381178.1:p.Pro707Ser missense NM_001394250.1:c.2104C>T NP_001381179.1:p.Pro702Ser missense NM_001394251.1:c.1987C>T NP_001381180.1:p.Pro663Ser missense NM_001394252.1:c.1987C>T NP_001381181.1:p.Pro663Ser missense NM_001394253.1:c.1987C>T NP_001381182.1:p.Pro663Ser missense NM_001394254.1:c.1987C>T NP_001381183.1:p.Pro663Ser missense NM_001394255.1:c.1945C>T NP_001381184.1:p.Pro649Ser missense NM_001394256.1:c.1945C>T NP_001381185.1:p.Pro649Ser missense NM_001394257.1:c.1945C>T NP_001381186.1:p.Pro649Ser missense NM_001394258.1:c.1930C>T NP_001381187.1:p.Pro644Ser missense NM_001394259.1:c.1900C>T NP_001381188.1:p.Pro634Ser missense NM_001394260.1:c.1900C>T NP_001381189.1:p.Pro634Ser missense NM_001394261.1:c.1894C>T NP_001381190.1:p.Pro632Ser missense NM_001394262.1:c.1876C>T NP_001381191.1:p.Pro626Ser missense NM_001394263.1:c.1876C>T NP_001381192.1:p.Pro626Ser missense NM_001394264.1:c.1801C>T NP_001381193.1:p.Pro601Ser missense NM_001394265.1:c.1780C>T NP_001381194.1:p.Pro594Ser missense NM_001394266.1:c.1687C>T NP_001381195.1:p.Pro563Ser missense NM_001394267.1:c.1687C>T NP_001381196.1:p.Pro563Ser missense NM_001394268.1:c.1687C>T NP_001381197.1:p.Pro563Ser missense NM_001394270.1:c.1687C>T NP_001381199.1:p.Pro563Ser missense NM_001394271.1:c.1687C>T NP_001381200.1:p.Pro563Ser missense NM_001394272.1:c.1687C>T NP_001381201.1:p.Pro563Ser missense NM_001394273.1:c.1660C>T NP_001381202.1:p.Pro554Ser missense NM_001394274.1:c.1642C>T NP_001381203.1:p.Pro548Ser missense NM_001394275.1:c.1642C>T NP_001381204.1:p.Pro548Ser missense NM_001394276.1:c.2392+3102C>T intron variant NM_001394277.1:c.1444C>T NP_001381206.1:p.Pro482Ser missense NM_003603.7:c.1201+3102C>T intron variant NM_021069.6:c.1687C>T NP_066547.1:p.Pro563Ser missense NC_000004.12:g.185623730G>A NC_000004.11:g.186544884G>A NG_029709.1:g.337987C>T - Protein change
- P467S, P601S, P644S, P707S, P548S, P563S, P594S, P626S, P634S, P702S, P554S, P730S, P749S, P763S, P482S, P632S, P649S, P663S
- Other names
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- Canonical SPDI
- NC_000004.12:185623729:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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| HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| SORBS2 | - | - |
GRCh38 GRCh37 |
92 | 235 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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| Uncertain significance (1) |
criteria provided, single submitter
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Mar 1, 2024 | RCV004464862.1 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Mar 01, 2024)
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criteria provided, single submitter
Method: clinical testing
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not specified
Affected status: unknown
Allele origin:
germline
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Ambry Genetics
Accession: SCV004955611.1
First in ClinVar: May 01, 2024 Last updated: May 01, 2024 |
Comment:
The c.1687C>T (p.P563S) alteration is located in exon 13 (coding exon 9) of the SORBS2 gene. This alteration results from a C to T substitution … (more)
The c.1687C>T (p.P563S) alteration is located in exon 13 (coding exon 9) of the SORBS2 gene. This alteration results from a C to T substitution at nucleotide position 1687, causing the proline (P) at amino acid position 563 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. (less)
|
Comment:
Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Comment:
The c.1687C>T (p.P563S) alteration is located in exon 13 (coding exon 9) of the SORBS2 gene. This alteration results from a C to T substitution at nucleotide position 1687, causing the proline (P) at amino acid position 563 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated May 08, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.