ClinVar Genomic variation as it relates to human health
NM_020975.6(RET):c.2240A>G (p.Lys747Arg)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NM_020975.6(RET):c.2240A>G (p.Lys747Arg)
Variation ID: 3227524 Accession: VCV003227524.1
- Type and length
-
single nucleotide variant, 1 bp
- Location
-
Cytogenetic: 10q11.21 10: 43116687 (GRCh38) [ NCBI UCSC ] 10: 43612135 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline May 1, 2024 May 1, 2024 Oct 22, 2023 - HGVS
-
Nucleotide Protein Molecular
consequenceNM_020975.6:c.2240A>G MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_066124.1:p.Lys747Arg missense NM_000323.2:c.2240A>G NP_000314.1:p.Lys747Arg missense NM_001355216.2:c.1478A>G NP_001342145.1:p.Lys493Arg missense NM_001406743.1:c.2240A>G NP_001393672.1:p.Lys747Arg missense NM_001406744.1:c.2240A>G NP_001393673.1:p.Lys747Arg missense NM_001406759.1:c.2240A>G NP_001393688.1:p.Lys747Arg missense NM_001406760.1:c.2240A>G NP_001393689.1:p.Lys747Arg missense NM_001406761.1:c.2111A>G NP_001393690.1:p.Lys704Arg missense NM_001406762.1:c.2111A>G NP_001393691.1:p.Lys704Arg missense NM_001406763.1:c.2105A>G NP_001393692.1:p.Lys702Arg missense NM_001406764.1:c.2111A>G NP_001393693.1:p.Lys704Arg missense NM_001406765.1:c.2105A>G NP_001393694.1:p.Lys702Arg missense NM_001406766.1:c.1952A>G NP_001393695.1:p.Lys651Arg missense NM_001406767.1:c.1952A>G NP_001393696.1:p.Lys651Arg missense NM_001406768.1:c.1976A>G NP_001393697.1:p.Lys659Arg missense NM_001406769.1:c.1844A>G NP_001393698.1:p.Lys615Arg missense NM_001406770.1:c.1952A>G NP_001393699.1:p.Lys651Arg missense NM_001406771.1:c.1802A>G NP_001393700.1:p.Lys601Arg missense NM_001406772.1:c.1844A>G NP_001393701.1:p.Lys615Arg missense NM_001406773.1:c.1802A>G NP_001393702.1:p.Lys601Arg missense NM_001406774.1:c.1715A>G NP_001393703.1:p.Lys572Arg missense NM_001406775.1:c.1514A>G NP_001393704.1:p.Lys505Arg missense NM_001406776.1:c.1514A>G NP_001393705.1:p.Lys505Arg missense NM_001406777.1:c.1514A>G NP_001393706.1:p.Lys505Arg missense NM_001406778.1:c.1514A>G NP_001393707.1:p.Lys505Arg missense NM_001406779.1:c.1343A>G NP_001393708.1:p.Lys448Arg missense NM_001406780.1:c.1343A>G NP_001393709.1:p.Lys448Arg missense NM_001406781.1:c.1343A>G NP_001393710.1:p.Lys448Arg missense NM_001406782.1:c.1343A>G NP_001393711.1:p.Lys448Arg missense NM_001406783.1:c.1214A>G NP_001393712.1:p.Lys405Arg missense NM_001406784.1:c.1250A>G NP_001393713.1:p.Lys417Arg missense NM_001406785.1:c.1223A>G NP_001393714.1:p.Lys408Arg missense NM_001406786.1:c.1214A>G NP_001393715.1:p.Lys405Arg missense NM_001406787.1:c.1208A>G NP_001393716.1:p.Lys403Arg missense NM_001406788.1:c.1055A>G NP_001393717.1:p.Lys352Arg missense NM_001406789.1:c.1055A>G NP_001393718.1:p.Lys352Arg missense NM_001406790.1:c.1055A>G NP_001393719.1:p.Lys352Arg missense NM_001406791.1:c.935A>G NP_001393720.1:p.Lys312Arg missense NM_001406792.1:c.791A>G NP_001393721.1:p.Lys264Arg missense NM_001406793.1:c.791A>G NP_001393722.1:p.Lys264Arg missense NM_001406794.1:c.791A>G NP_001393723.1:p.Lys264Arg missense NM_020629.2:c.2240A>G NP_065680.1:p.Lys747Arg missense NM_020630.7:c.2240A>G NP_065681.1:p.Lys747Arg missense NC_000010.11:g.43116687A>G NC_000010.10:g.43612135A>G NG_007489.1:g.44619A>G LRG_518:g.44619A>G LRG_518t1:c.2240A>G LRG_518p1:p.Lys747Arg LRG_518t2:c.2240A>G LRG_518p2:p.Lys747Arg - Protein change
- K264R, K312R, K352R, K403R, K405R, K408R, K417R, K448R, K493R, K505R, K572R, K601R, K615R, K651R, K659R, K702R, K704R, K747R
- Other names
- -
- Canonical SPDI
- NC_000010.11:43116686:A:G
-
Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
-
-
Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
-
-
Allele frequency
Help
The frequency of the allele represented by this VCV record.
-
- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
---|---|---|---|---|---|---|
HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
RET | Sufficient evidence for dosage pathogenicity | No evidence available |
GRCh38 GRCh37 |
3523 | 3643 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
---|---|---|---|---|
Uncertain significance (1) |
criteria provided, single submitter
|
Oct 22, 2023 | RCV004524642.1 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
|
---|---|---|---|---|---|
Uncertain significance
(Oct 22, 2023)
|
criteria provided, single submitter
Method: clinical testing
|
Hereditary cancer-predisposing syndrome
Affected status: unknown
Allele origin:
germline
|
Ambry Genetics
Accession: SCV005028266.1
First in ClinVar: May 01, 2024 Last updated: May 01, 2024 |
Comment:
The p.K747R variant (also known as c.2240A>G), located in coding exon 12 of the RET gene, results from an A to G substitution at nucleotide … (more)
The p.K747R variant (also known as c.2240A>G), located in coding exon 12 of the RET gene, results from an A to G substitution at nucleotide position 2240. The lysine at codon 747 is replaced by arginine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. (less)
|
Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpThere are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated May 08, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.