ClinVar Genomic variation as it relates to human health
NM_020975.6(RET):c.2546G>A (p.Gly849Asp)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_020975.6(RET):c.2546G>A (p.Gly849Asp)
Variation ID: 543757 Accession: VCV000543757.8
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 10q11.21 10: 43119684 (GRCh38) [ NCBI UCSC ] 10: 43615132 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline May 28, 2018 Feb 20, 2024 Sep 11, 2023 - HGVS
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Nucleotide Protein Molecular
consequenceNM_020975.6:c.2546G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_066124.1:p.Gly849Asp missense NM_000323.2:c.2546G>A NP_000314.1:p.Gly849Asp missense NM_001355216.2:c.1784G>A NP_001342145.1:p.Gly595Asp missense NM_001406743.1:c.2546G>A NP_001393672.1:p.Gly849Asp missense NM_001406744.1:c.2546G>A NP_001393673.1:p.Gly849Asp missense NM_001406759.1:c.2546G>A NP_001393688.1:p.Gly849Asp missense NM_001406760.1:c.2546G>A NP_001393689.1:p.Gly849Asp missense NM_001406761.1:c.2417G>A NP_001393690.1:p.Gly806Asp missense NM_001406762.1:c.2417G>A NP_001393691.1:p.Gly806Asp missense NM_001406763.1:c.2411G>A NP_001393692.1:p.Gly804Asp missense NM_001406764.1:c.2417G>A NP_001393693.1:p.Gly806Asp missense NM_001406765.1:c.2411G>A NP_001393694.1:p.Gly804Asp missense NM_001406766.1:c.2258G>A NP_001393695.1:p.Gly753Asp missense NM_001406767.1:c.2258G>A NP_001393696.1:p.Gly753Asp missense NM_001406768.1:c.2282G>A NP_001393697.1:p.Gly761Asp missense NM_001406769.1:c.2150G>A NP_001393698.1:p.Gly717Asp missense NM_001406770.1:c.2258G>A NP_001393699.1:p.Gly753Asp missense NM_001406771.1:c.2108G>A NP_001393700.1:p.Gly703Asp missense NM_001406772.1:c.2150G>A NP_001393701.1:p.Gly717Asp missense NM_001406773.1:c.2108G>A NP_001393702.1:p.Gly703Asp missense NM_001406774.1:c.2021G>A NP_001393703.1:p.Gly674Asp missense NM_001406775.1:c.1820G>A NP_001393704.1:p.Gly607Asp missense NM_001406776.1:c.1820G>A NP_001393705.1:p.Gly607Asp missense NM_001406777.1:c.1820G>A NP_001393706.1:p.Gly607Asp missense NM_001406778.1:c.1820G>A NP_001393707.1:p.Gly607Asp missense NM_001406779.1:c.1649G>A NP_001393708.1:p.Gly550Asp missense NM_001406780.1:c.1649G>A NP_001393709.1:p.Gly550Asp missense NM_001406781.1:c.1649G>A NP_001393710.1:p.Gly550Asp missense NM_001406782.1:c.1649G>A NP_001393711.1:p.Gly550Asp missense NM_001406783.1:c.1520G>A NP_001393712.1:p.Gly507Asp missense NM_001406784.1:c.1556G>A NP_001393713.1:p.Gly519Asp missense NM_001406785.1:c.1529G>A NP_001393714.1:p.Gly510Asp missense NM_001406786.1:c.1520G>A NP_001393715.1:p.Gly507Asp missense NM_001406787.1:c.1514G>A NP_001393716.1:p.Gly505Asp missense NM_001406788.1:c.1361G>A NP_001393717.1:p.Gly454Asp missense NM_001406789.1:c.1361G>A NP_001393718.1:p.Gly454Asp missense NM_001406790.1:c.1361G>A NP_001393719.1:p.Gly454Asp missense NM_001406791.1:c.1241G>A NP_001393720.1:p.Gly414Asp missense NM_001406792.1:c.1097G>A NP_001393721.1:p.Gly366Asp missense NM_001406793.1:c.1097G>A NP_001393722.1:p.Gly366Asp missense NM_001406794.1:c.1097G>A NP_001393723.1:p.Gly366Asp missense NM_020629.2:c.2546G>A NP_065680.1:p.Gly849Asp missense NM_020630.7:c.2546G>A NP_065681.1:p.Gly849Asp missense NC_000010.11:g.43119684G>A NC_000010.10:g.43615132G>A NG_007489.1:g.47616G>A LRG_518:g.47616G>A LRG_518t1:c.2546G>A LRG_518p1:p.Gly849Asp LRG_518t2:c.2546G>A LRG_518p2:p.Gly849Asp - Protein change
- G849D, G595D, G454D, G505D, G510D, G550D, G804D, G366D, G507D, G674D, G717D, G761D, G414D, G607D, G703D, G753D, G519D, G806D
- Other names
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- Canonical SPDI
- NC_000010.11:43119683:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
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The frequency of the allele represented by this VCV record.
The Genome Aggregation Database (gnomAD), exomes 0.00000
Exome Aggregation Consortium (ExAC) 0.00001
The Genome Aggregation Database (gnomAD) 0.00001
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
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Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
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The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
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The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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RET | Sufficient evidence for dosage pathogenicity | No evidence available |
GRCh38 GRCh37 |
3381 | 3502 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
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The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Uncertain significance (1) |
criteria provided, single submitter
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Sep 11, 2023 | RCV000654598.7 | |
Uncertain significance (1) |
criteria provided, single submitter
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May 24, 2022 | RCV002485479.1 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
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The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(May 24, 2022)
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criteria provided, single submitter
Method: clinical testing
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Hirschsprung disease, susceptibility to, 1
Familial medullary thyroid carcinoma Multiple endocrine neoplasia, type 2b Pheochromocytoma Multiple endocrine neoplasia, type 2a
Affected status: unknown
Allele origin:
unknown
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Fulgent Genetics, Fulgent Genetics
Accession: SCV002785394.1
First in ClinVar: Dec 31, 2022 Last updated: Dec 31, 2022 |
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Uncertain significance
(Sep 11, 2023)
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criteria provided, single submitter
Method: clinical testing
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Multiple endocrine neoplasia, type 2
Affected status: unknown
Allele origin:
germline
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Invitae
Accession: SCV000776492.5
First in ClinVar: May 28, 2018 Last updated: Feb 20, 2024 |
Comment:
ClinVar contains an entry for this variant (Variation ID: 543757). This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is … (more)
ClinVar contains an entry for this variant (Variation ID: 543757). This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 849 of the RET protein (p.Gly849Asp). This variant is present in population databases (rs761130672, gnomAD 0.1%). This variant has not been reported in the literature in individuals affected with RET-related conditions. An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. (less)
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpThere are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for rs761130672 ...
HelpRecord last updated Feb 28, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.