| - GRCh37:
- Chr12:133220062
- GRCh38:
- Chr12:132643476
| POLE | E1459* | Colorectal cancer, susceptibility to, 12, Facial dysmorphism-immunodeficiency-livedo-short stature syndrome, Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency
| Conflicting interpretations of pathogenicity (Jan 1, 2023) | criteria provided, conflicting interpretations |
| - GRCh37:
- Chr2:47702161-47702862
- GRCh38:
- Chr2:47475022-47475723
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47690168
- GRCh38:
- Chr2:47463029
| MSH2 | | Hereditary nonpolyposis colorectal neoplasms | Likely pathogenic (Jul 14, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr2:47630328-47631716
- GRCh38:
- Chr2:47403189-47404577
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47643490-47643491
- GRCh38:
- Chr2:47416351-47416352
| MSH2 | K268*, K334* | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112116559
- GRCh38:
- Chr5:112780862
| APC | E143fs, E177fs, E202fs, E212fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112174369
- GRCh38:
- Chr5:112838672
| APC | Y1002fs, Y1009fs, Y1027fs, Y1037fs, Y1045fs, Y744fs, Y867fs, Y901fs, Y926fs, Y936fs, Y968fs, Y986fs, Y999fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37081675-37081786
- GRCh38:
- Chr3:37040184-37040295
| MLH1 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr18:48584560
- GRCh38:
- Chr18:51058190
| SMAD4 | Q245* | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48033800-48033808
- GRCh38:
- Chr2:47806661-47806669
| MSH6 | | Carcinoma of colon | Likely benign | no assertion criteria provided |
| - GRCh37:
- Chr5:112175455-112175456
- GRCh38:
- Chr5:112839758-112839759
| APC | S1106fs, S1229fs, S1263fs, S1288fs, S1298fs, S1330fs, S1348fs, S1361fs, S1364fs, S1371fs, S1389fs, S1399fs, S1407fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112157591-112164813
- GRCh38:
- Chr5:112821894-112829116
| APC | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47698099-47699245
- GRCh38:
- Chr2:47470960-47472106
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr19:50902096
- GRCh38:
- Chr19:50398839
| POLD1 | | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr3:37089048-37089050
- GRCh38:
- Chr3:37047557-37047559
| MLH1 | L232fs, L249fs, L349fs, L492fs, L557fs, L590fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112174317
- GRCh38:
- Chr5:112838620
| APC | H1009fs, H1019fs, H1027fs, H726fs, H849fs, H883fs, H908fs, H918fs, H950fs, H968fs, H981fs, H984fs, H991fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112175138
- GRCh38:
- Chr5:112839441
| APC | A1000fs, A1123fs, A1157fs, A1182fs, A1192fs, A1224fs, A1242fs, A1255fs, A1258fs, A1265fs, A1283fs, A1293fs, A1301fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47656879-47657081
- GRCh38:
- Chr2:47429740-47429942
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112073554-112074476
- GRCh38:
- Chr5:112737857-112738779
| APC | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112177372
- GRCh38:
- Chr5:112841675
| APC | | Hereditary cancer-predisposing syndrome | Likely benign (Oct 12, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112173778
- GRCh38:
- Chr5:112838081
| APC | V547fs, V670fs, V704fs, V729fs, V739fs, V771fs, V789fs, V802fs, V805fs, V812fs, V830fs, V840fs, V848fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48010371-48014019
- GRCh38:
- Chr2:47783232-47786880
| LOC129933708, LOC129933707, MSH6 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112174217-112174218
- GRCh38:
- Chr5:112838520-112838521
| APC | G694fs, G817fs, G851fs, G876fs, G886fs, G918fs, G936fs, G949fs, G952fs, G959fs, G977fs, G987fs, G995fs | Hereditary cancer-predisposing syndrome, Familial adenomatous polyposis 1 | Pathogenic (Aug 2, 2021) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr2:48033648-48033649
- GRCh38:
- Chr2:47806509-47806510
| MSH6 | G1162fs, G1292fs, G990fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37089094
- GRCh38:
- Chr3:37047603
| MLH1 | G248R, G265R, G365R, G508R, G573R, G606R | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr3:37067124-37067646
- GRCh38:
- Chr3:37025633-37026155
| MLH1 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112154775-112154869
- GRCh38:
- Chr5:112819078-112819172
| APC | Q290fs, Q321fs, Q324fs, Q331fs, Q349fs, Q359fs, Q66fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47637231-47637512
- GRCh38:
- Chr2:47410092-47410373
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr16:23646974-23646975
- GRCh38:
- Chr16:23635653-23635654
| PALB2 | V298fs | Carcinoma of colon | Likely pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47630328-47630541
- GRCh38:
- Chr2:47403189-47403402
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr19:1220730
- GRCh38:
- Chr19:1220731
| STK11 | | Peutz-Jeghers syndrome | Likely benign (Dec 5, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr2:47612303-47612392
- GRCh38:
- Chr2:47385164-47385253
| EPCAM | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47635538-47635695
- GRCh38:
- Chr2:47408399-47408556
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112111318
- GRCh38:
- Chr5:112775621
| APC | | Hereditary cancer-predisposing syndrome, Familial adenomatous polyposis 1 | Likely pathogenic (Jun 28, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr2:48032047-48032167
- GRCh38:
- Chr2:47804908-47805028
| MSH6 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48018263
- GRCh38:
- Chr2:47791124
| MSH6 | G153V | Hereditary cancer-predisposing syndrome | Likely pathogenic (Feb 20, 2018) | criteria provided, single submitter |
| - GRCh37:
- Chr2:47643433-47643569
- GRCh38:
- Chr2:47416294-47416430
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37045949
- GRCh38:
- Chr3:37004458
| MLH1 | G122fs, G24fs, G89fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47630329-47630697
- GRCh38:
- Chr2:47403190-47403558
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47705644
- GRCh38:
- Chr2:47478505
| MSH2 | Y749fs, Y815fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47703494
- GRCh38:
- Chr2:47476355
| MSH2 | | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr5:112163669
- GRCh38:
- Chr5:112827972
| APC | A248G, A371G, A405G, A430G, A440G, A472G, A490G, A503G, A506G, A513G, A531G, A541G, A549G | Familial adenomatous polyposis 1 | Uncertain significance (Nov 30, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112111323-112111632
- GRCh38:
- Chr5:112775626-112775935
| APC | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112157654
- GRCh38:
- Chr5:112821957
| APC | | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr5:112102081
- GRCh38:
- Chr5:112766384
| APC | Q40fs, Q65fs, Q6fs, Q75fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr7:6013113
- GRCh38:
- Chr7:5973482
| PMS2 | E525fs, E645fs, E649fs, E701fs, E712fs, E730fs, E733fs, E784fs, E836fs, E847fs | Hereditary cancer-predisposing syndrome | Pathogenic (Feb 12, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr2:48032162-48032166
- GRCh38:
- Chr2:47805023-47805027
| MSH6 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr16:68863588
- GRCh38:
- Chr16:68829685
| CDH1 | L121P, L260P, L715P, L776P | Hereditary cancer-predisposing syndrome | Uncertain significance (Sep 3, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112090586-112092546
- GRCh38:
- Chr5:112754889-112756849
| APC | | Malignant tumor of breast, Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112162803
- GRCh38:
- Chr5:112827106
| APC | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48027103
- GRCh38:
- Chr2:47799964
| MSH6 | G359fs, G531fs, G661fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47635538-47635539
- GRCh38:
- Chr2:47408399-47408400
| MSH2 | | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr3:37067444
- GRCh38:
- Chr3:37025953
| MLH1 | T111I, T211I, T354I, T419I, T452I, T94I | Carcinoma of colon | Likely pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr17:41246117
- GRCh38:
- Chr17:43094100
| BRCA1 | | Carcinoma of colon | Likely benign | no assertion criteria provided |
| - GRCh37:
- Chr3:37067456
- GRCh38:
- Chr3:37025965
| MLH1 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37089175
- GRCh38:
- Chr3:37047684
| MLH1 | | Hereditary nonpolyposis colorectal neoplasms | Pathogenic (May 30, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112175433
- GRCh38:
- Chr5:112839736
| APC | P1098R, P1221R, P1255R, P1280R, P1290R, P1322R, P1340R, P1353R, P1356R, P1363R, P1381R, P1391R, P1399R | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr7:6026388-6027252
- GRCh38:
- Chr7:5986757-5987621
| PMS2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr13:32945078
- GRCh38:
- Chr13:32370941
| BRCA2 | | Hereditary breast ovarian cancer syndrome | Likely benign (Jan 26, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112175429
- GRCh38:
- Chr5:112839732
| APC | T1097A, T1220A, T1254A, T1279A, T1289A, T1321A, T1339A, T1352A, T1355A, T1362A, T1380A, T1390A, T1398A | Familial adenomatous polyposis 1 | Uncertain significance (Apr 20, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr17:41209067-41209153
- GRCh38:
- Chr17:43057050-43057136
| BRCA1 | | Carcinoma of colon, Malignant tumor of breast, Breast-ovarian cancer, familial, susceptibility to, 1
| Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112154988-112154998
- GRCh38:
- Chr5:112819291-112819301
| APC | C137fs, C260fs, C294fs, C319fs, C329fs, C361fs, C392fs, C395fs, C402fs, C420fs, C430fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr16:23646926
- GRCh38:
- Chr16:23635605
| PALB2 | Q314R | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr3:37053543-37053544
- GRCh38:
- Chr3:37012052-37012053
| MLH1 | S113fs, S178fs, S211fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112170646-112170863
- GRCh38:
- Chr5:112834949-112835166
| APC | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48032748-48032767
- GRCh38:
- Chr2:47805609-47805628
| MSH6 | | Carcinoma of colon | Likely pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr7:6042253
- GRCh38:
- Chr7:6002622
| PMS2 | S123fs, S17fs, S20fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37070369
- GRCh38:
- Chr3:37028878
| MLH1 | N144D, N161D, N261D, N404D, N469D, N502D | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr2:48023031-48023203
- GRCh38:
- Chr2:47795892-47796064
| MSH6 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48026977
- GRCh38:
- Chr2:47799838
| MSH6 | E317*, E489*, E619* | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47637205
- GRCh38:
- Chr2:47410066
| MSH2 | | Carcinoma of colon | Likely benign | no assertion criteria provided |
| - GRCh37:
- Chr2:47703504-47703711
- GRCh38:
- Chr2:47476365-47476572
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112102110
- GRCh38:
- Chr5:112766413
| APC | | Hereditary cancer-predisposing syndrome | Likely pathogenic (Nov 4, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr3:37067126-37067499
- GRCh38:
- Chr3:37025635-37026008
| MLH1 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47635538-47636405
- GRCh38:
- Chr2:47408399-47409266
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47606089-47606481
- GRCh38:
- Chr2:47378950-47379342
| EPCAM | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48026210-48026211
- GRCh38:
- Chr2:47799071-47799072
| MSH6 | V234fs, V364fs, V62fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112174182-112174185
- GRCh38:
- Chr5:112838485-112838488
| APC | N682fs, N805fs, N839fs, N864fs, N874fs, N906fs, N924fs, N937fs, N940fs, N947fs, N965fs, N975fs, N983fs | not provided, Hereditary cancer-predisposing syndrome | Pathogenic (Jan 9, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr5:112090586-112099120
- GRCh38:
- Chr5:112754889-112763423
| APC | | Desmoid tumors, Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:48010539
- GRCh38:
- Chr2:47783400
| MSH6 | G56V | Hereditary cancer-predisposing syndrome | Uncertain significance (Jul 21, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr3:37092129-37092130
- GRCh38:
- Chr3:37050638-37050639
| MLH1 | E396fs, E413fs, E513fs, E656fs, E685fs, E699fs, E721fs, E723fs, E754fs | Carcinoma of colon | Likely pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47639549-47640182
- GRCh38:
- Chr2:47412410-47413043
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr3:37061824
- GRCh38:
- Chr3:37020333
| MLH1 | V205G, V270G, V303G, V62G | Carcinoma of colon | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr3:37092003-37092004
- GRCh38:
- Chr3:37050512-37050513
| MLH1 | S353fs, S370fs, S470fs, S613fs, S642fs, S656fs, S678fs, S680fs, S711fs | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47630326-47631404
- GRCh38:
- Chr2:47403187-47404265
| MSH2 | | Carcinoma of colon | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr2:47637324
- GRCh38:
- Chr2:47410185
| MSH2 | A154fs, A88fs | Carcinoma of colon, Endometrial carcinoma, Lynch syndrome
| Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr5:112174080
- GRCh38:
- Chr5:112838383
| APC | T647I, T770I, T804I, T829I, T839I, T871I, T889I, T902I, T905I, T912I, T930I, T940I, T948I | Familial adenomatous polyposis 1 | Uncertain significance (Aug 28, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr12:133219574
- GRCh38:
- Chr12:132642988
| POLE | S1520R | Colorectal cancer, susceptibility to, 12, Hereditary cancer-predisposing syndrome | Uncertain significance (Jul 10, 2022) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr2:48026722
- GRCh38:
- Chr2:47799583
| MSH6 | N232D, N404D, N534D | Hereditary nonpolyposis colorectal neoplasms, Hereditary cancer-predisposing syndrome | Uncertain significance (Aug 31, 2021) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr16:23641755
- GRCh38:
- Chr16:23630434
| PALB2 | S574P | Familial cancer of breast, Hereditary cancer-predisposing syndrome | Uncertain significance (Jul 21, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr12:133254307
- GRCh38:
- Chr12:132677721
| POLE | | Colorectal cancer, susceptibility to, 12 | Likely pathogenic (May 12, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr3:37081691
- GRCh38:
- Chr3:37040200
| MLH1 | | Hereditary cancer-predisposing syndrome | Likely benign (Nov 16, 2021) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr10:89692966
- GRCh38:
- Chr10:87933209
| PTEN | | PTEN hamartoma tumor syndrome, Hereditary cancer-predisposing syndrome | Likely benign (Mar 17, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr2:48018198-48018199
- GRCh38:
- Chr2:47791059-47791060
| MSH6 | Q132fs | Hereditary cancer-predisposing syndrome, Hereditary nonpolyposis colorectal neoplasms | Pathogenic (Aug 23, 2022) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr11:108151708
- GRCh38:
- Chr11:108280981
| ATM | | Hereditary cancer-predisposing syndrome | Likely benign (Feb 26, 2016) | criteria provided, single submitter |
| - GRCh37:
- Chr5:112177562
- GRCh38:
- Chr5:112841865
| APC | G1808S, G1990S, G2032S, G2073S, G1965S, G2063S, G2109S, G1931S, G2000S, G2050S, G2066S, G2101S, G2091S | Familial adenomatous polyposis 1 | Uncertain significance (Aug 24, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:108236233
- GRCh38:
- Chr11:108365506
| ATM, C11orf65 | | Ataxia-telangiectasia syndrome | Uncertain significance (Sep 1, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr16:23632770
- GRCh38:
- Chr16:23621449
| PALB2 | P1009L | Carcinoma of colon | Uncertain significance (Jan 31, 2017) | no assertion criteria provided |
| - GRCh37:
- Chr16:23647620
- GRCh38:
- Chr16:23636299
| PALB2 | H83N | Carcinoma of colon | Uncertain significance (Jan 31, 2017) | no assertion criteria provided |
| - GRCh37:
- Chr16:23647640
- GRCh38:
- Chr16:23636319
| PALB2 | I76T | Familial cancer of breast | Uncertain significance (Aug 28, 2021) | criteria provided, single submitter |