| - GRCh38:
- Chr8:12721809-30183737
| TNFRSF10A, TNFRSF10A-DT, TNFRSF10D, TRIM35, TRMT9B, NUGGC, PBK, NUDT18, TUSC3, VPS37A, TNFRSF10B, TNFRSF10C, NPM2, PCM1, PDGFRL, PDLIM2, PEBP4, PHYHIP, PIWIL2, PIWIL2-DT, PNMA2, PNOC, POLR3D, PPP2R2A, PPP3CC, PSD3, PTK2B, R3HCC1, REEP4, RHOBTB2, SARAF, SCARA3, SCARA5, SFTPC, SGCZ, SH2D4A, SLC18A1, SLC25A37, SLC39A14, SLC7A2, SNORD3F, SORBS3, STC1, STMN4, XPO7, ZDHHC2, ZNF395, ADAM28, ADAM7, ADAM7-AS1, ADAM7-AS2, ADAMDEC1, ADRA1A, ASAH1, ASAH1-AS1, ATP6V1B2, BIN3, BIN3-IT1, BMP1, BNIP3L, C8orf48, C8orf58, CCAR2, CCDC25, CDCA2, CHMP7, CHRNA2, CLU, CNOT7, CSGALNACT1, DCTN6, DLC1, DMTN, DOCK5, DOK2, DPYSL2, DUSP4, EBF2, EGR3, ELP3, ENTPD4, ENTPD4-DT, EPHX2, ESCO2, EXTL3, EXTL3-AS1, FBXO16, FGF17, FGF20, FGL1, FHIP2B, FZD3, GFRA2, GNRH1, HMBOX1, HR, HRURF, INTS10, INTS9, KCTD9, KIF13B, LEPROTL1, LGI3, LINC00589, LINC00681, LINC02099, LINC02153, LINC02209, LINC02948, LINC03019, LINC03023, LINC03093, LOC100128993, LOC101929237, LOC101929258, LOC101929470, LOC102725080, LOC105379292, LOC105379301, LOC105379311, LOC105379314, LOC105379327, LOC105379331, LOC105379342, LOC107986876, LOC108254664, LOC110120768, LOC110120769, LOC110120770, LOC110121062, LOC110121196, LOC111255642, LOC111255645, LOC111465018, LOC113788268, LOC113788269, LOC113788270, LOC113788271, LOC113788272, LOC113788273, LOC113788274, LOC113788275, LOC114827823, LOC116186922, LOC116186923, LOC116186924, LOC116186925, LOC121294073, LOC121294074, LOC121294075, LOC121294076, LOC121331295, LOC121331296, LOC121331297, LOC121740711, LOC121740712, LOC121740713, LOC121740714, LOC124049166, LOC124110275, LOC124110276, LOC124110277, LOC124153111, LOC124153112, LOC124153113, LOC124153114, LOC124153115, LOC124153116, LOC124153117, LOC124153118, LOC124153119, LOC124153120, LOC124153121, LOC124153122, LOC124153123, LOC124153124, LOC124153125, LOC124153126, LOC124153127, LOC124153128, LOC124153129, LOC124153130, LOC124153131, LOC124153132, LOC124153133, LOC124153134, LOC124153135, LOC124153136, LOC124153137, LOC124901868, LOC126860305, LOC126860306, LOC126860307, LOC126860308, LOC126860309, LOC126860310, LOC126860311, LOC126860312, LOC126860313, LOC126860314, LOC126860315, LOC126860316, LOC126860317, LOC126860318, LOC126860319, LOC126860320, LOC126860321, LOC126860322, LOC126860323, LOC126860324, LOC126860325, LOC126860326, LOC126860327, LOC126860328, LOC126860329, LOC126860330, LOC126860331, LOC126860332, LOC126860333, LOC126860334, LOC126860335, LOC126860336, LOC126860337, LOC126860338, LOC126860339, LOC126860340, LOC128772327, LOC128772328, LOC254896, LONRF1, LOXL2, LOXL2-AS1, LPL, LZTS1, LZTS1-AS1, MBOAT4, MICU3, MIR3148, MIR320A, MIR3622A, MIR3622B, MIR383, MIR3926-1, MIR3926-2, MIR4287, MIR4288, MIR548H4, MIR548V, MIR6841, MIR6842, MIR6843, MIR6876, MSR1, MTMR7, MTUS1, MTUS1-DT, NAT1, NAT2, NEFL, NEFM, NKX2-6, NKX3-1 | | Microcephaly | Pathogenic (Aug 24, 2023) | criteria provided, single submitter |
| - GRCh37:
- Chr1:225273324
- GRCh38:
- Chr1:225085622
| DNAH14 | K1136Q | Seizure, Intellectual disability, severe, Hypotonia, Delayed speech and language development, Microcephaly | Uncertain significance (May 17, 2023) | criteria provided, single submitter |
| - GRCh37:
- Chr1:225341492
- GRCh38:
- Chr1:225153790
| DNAH14 | L1746S | Seizure, Intellectual disability, severe, Hypotonia, Delayed speech and language development, Microcephaly | Uncertain significance (May 17, 2023) | criteria provided, single submitter |
| - GRCh37:
- Chr11:66190192-66190198
- GRCh38:
- Chr11:66422721-66422727
| NPAS4 | S161fs | Microcephaly | Uncertain significance (Mar 23, 2023) | criteria provided, single submitter |
| - GRCh37:
- Chr4:144457636-144457641
- GRCh38:
- Chr4:143536483-143536488
| SMARCA5 | | Pubertal developmental failure in females, Failure to thrive, Microcephaly, Short stature | Pathogenic (Jan 28, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr11:47442253
- GRCh38:
- Chr11:47420702
| PSMC3 | R304W | Microretrognathia, Failure to thrive, Hip dysplasia, Patent ductus arteriosus, Secundum atrial septal defect, Abnormality of the pulmonary veins, Global developmental delay, Patent foramen ovale, Microcephaly, High anterior hairline, PolymicrogyriaCerebellar vermis hypoplasia, ...see more | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr21:35288034
- GRCh38:
- Chr21:33915730
| ATP5PO | Q12* | Microcephaly, Seizure, Dysphagia, Severe global developmental delay | Pathogenic (Dec 22, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr21:35279777
- GRCh38:
- Chr21:33907473
| ATP5PO | | Microcephaly, Seizure, Dysphagia, Severe global developmental delay | Pathogenic (Dec 22, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr7:99697355
- GRCh38:
- Chr7:100099732
| MCM7 | Q45* | Astigmatism, Anisometropia, Trichiasis, Microphthalmia, Deeply set eye, Progeroid facial appearance, Hypermetropia, Microcephaly, Psychomotor retardation
| Pathogenic (Jun 23, 2021) | criteria provided, single submitter |
| | | | Familial Mediterranean fever | Pathogenic (Dec 8, 2022) | criteria provided, single submitter |
| - GRCh37:
- ChrX:153095738-153095744
- GRCh38:
- ChrX:153830283-153830289
| PDZD4 | N4fs | Abnormality of movement, Microcephaly, Hyperactivity, Coarse facial features, Intellectual disability | Uncertain significance (Oct 9, 2022) | no assertion criteria provided |
| - GRCh37:
- Chr7:155389460-157960969
| RBM33, DNAJB6, LMBR1, MNX1, NOM1, PTPRN2, RNF32, SHH, UBE3C | | Microcephaly | Pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr18:67671430
- GRCh38:
- Chr18:70004194
| RTTN | L1301S, L2213S | Microcephaly | Likely pathogenic (Aug 3, 2022) | no assertion criteria provided |
| - GRCh37:
- Chr12:49333443
- GRCh38:
- Chr12:48939660
| ARF3 | K127E | Seizure, Heart, malformation of, Hypotonia, Intellectual disability, Scoliosis, Atrophy/Degeneration affecting the central nervous system, Microcephaly | Pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr12:49333545
- GRCh38:
- Chr12:48939762
| ARF3 | D93N | Motor delay, Autism, Long neck, Self-injurious behavior, Delayed social development, Abnormality of the dentition, Delayed speech and language development, Clinodactyly, Neurodevelopmental delay, Global developmental delay, Long earBifid uvula, Pectus excavatum, Hypotonia, Intellectual disability, Atrophy/Degeneration affecting the central nervous system, Microcephaly, ...see more | Pathogenic/Likely pathogenic (Mar 21, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr12:49333839
- GRCh38:
- Chr12:48940056
| ARF3 | D67V | Dystonic disorder, Intellectual disability, Scoliosis, Atrophy/Degeneration affecting the central nervous system, Microcephaly | Pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr12:49334845
- GRCh38:
- Chr12:48941062
| ARF3 | L12V | Dystonic disorder, Intellectual disability, Scoliosis, Atrophy/Degeneration affecting the central nervous system, Microcephaly | Likely pathogenic | criteria provided, single submitter |
| - GRCh38:
- Chr18:69541066-80373285
| CNDP2, LOC125371438, LOC125371439, LOC125371440, LOC126862827, LOC126862828, NFATC1, PARD6G, PARD6G-AS1, PTGR3, RBFA, MBP, MIR548AV, LOC126862829, LOC126862830, LOC126862831, LOC126862832, LOC126862833, LOC126862834, LOC284240, LOC339298, NETO1, LOC126862796, LOC126862797, LOC125371443, LOC126862784, LOC126862785, LOC126862786, NETO1-DT, LOC125371441, LOC125371442, LOC126862787, LOC126862788, LOC126862789, LOC126862790, LOC126862791, LOC126862792, CYB5A, GTSCR1, HSBP1L1, KCNG2, LINC00683, LOC126862793, LOC126862794, LOC126862795, CTDP1, CTDP1-DT, LINC00908, LINC01029, LINC01541, LINC01879, DIPK1C, DOK6, FBXO15, GALR1, ADNP2, ATP9B, C18orf63, CBLN2, CD226, CNDP1, LINC01893, LINC01896, LINC01898, LINC01899, LINC01909, LINC01910, LINC01922, LINC01927, LINC02582, LINC02864, LIVAR, LOC105372187, LOC105372228, LOC107992389, LOC110120868, LOC110120915, LOC110120931, LOC110120935, LOC110121312, LOC110121314, LOC110121318, LOC110121330, LOC112543433, LOC116276492, LOC121627836, LOC121627838, LOC121627839, LOC121627840, LOC121627841, LOC121852970, LOC124904333, LOC126862798, LOC126862799, LOC126862800, LOC126862801, LOC126862802, LOC126862803, LOC126862804, LOC126862805, LOC126862806, LOC126862807, LOC126862808, LOC126862809, LOC126862810, LOC126862811, LOC126862812, LOC126862813, LOC126862814, LOC126862815, LOC126862816, LOC126862817, LOC126862818, LOC126862819, LOC126862820, LOC126862821, LOC126862822, LOC126862823, LOC126862824, LOC126862825, LOC126862826, RBFADN, RTTN, SALL3, SLC66A2, SMIM21, SOCS6, TIMM21, TSHZ1, TXNL4A, ZNF236, ZNF236-DT, ZNF407, ZNF407-AS1, ZNF516, ZNF516-AS1, ZNF516-DT | | Gray matter heterotopia, Failure to thrive, Microcephaly, Parietal foramina, Intellectual disability, severe, Pulmonary valve stenosis, Intellectual disability, Scoliosis, Proportionate short stature, Nystagmus, Short stature ...see more | Pathogenic (Apr 14, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:76910838
- GRCh38:
- Chr11:77199793
| MYO7A | | Microcephaly, Short stature, Global developmental delay, Sensorineural hearing impairment | Uncertain significance (Jun 1, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr16:75674214
- GRCh38:
- Chr16:75640316
| KARS1 | Q114*, Q86* | Microcephaly, Seizure, Global developmental delay, Nystagmus | Likely pathogenic (Aug 1, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27842080
- GRCh38:
- Chr12:27689147
| PPFIBP1 | R730*, R852*, R877*, R883* | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27825397
- GRCh38:
- Chr12:27672464
| PPFIBP1 | Q298*, Q420*, Q434*, Q451* | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27829363-27829373
- GRCh38:
- Chr12:27676430-27676440
| PPFIBP1 | A337fs, A459fs, A473fs, A490fs | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27800707
- GRCh38:
- Chr12:27647774
| PPFIBP1 | R135* | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27829418
- GRCh38:
- Chr12:27676485
| PPFIBP1 | Q354*, Q476*, Q490*, Q507* | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27841273
- GRCh38:
- Chr12:27688340
| PPFIBP1 | R658*, R780*, R805*, R811* | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27826745-27826746
- GRCh38:
- Chr12:27673812-27673813
| PPFIBP1 | E320fs, E442fs, E456fs, E473fs | Seizure, Cerebral calcification, Intellectual disability, severe, Microcephaly | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27842105
- GRCh38:
- Chr12:27689172
| PPFIBP1 | Y738fs, Y860fs, Y885fs, Y891fs | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27820254
- GRCh38:
- Chr12:27667321
| PPFIBP1 | | Neurodevelopmental disorder with seizures, microcephaly, and brain abnormalities, Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Pathogenic (May 10, 2023) | criteria provided, single submitter |
| - GRCh37:
- Chr12:27835566
- GRCh38:
- Chr12:27682633
| PPFIBP1 | G579V, G701V, G726V, G732V | Seizure, Microcephaly, Intellectual disability, severe, Cerebral calcification | Uncertain significance (Apr 14, 2022) | criteria provided, single submitter |
| - GRCh37:
- Chr18:67742707-67742708
- GRCh38:
- Chr18:70075471-70075472
| RTTN | Y1482fs, Y570fs | not provided | Pathogenic (Jun 4, 2022) | criteria provided, single submitter |
| - GRCh37:
- ChrX:110971437
- GRCh38:
- ChrX:111728209
| ALG13 | V596F, V654F, V680F, V758F | Microcephaly | Likely pathogenic (Mar 18, 2021) | no assertion criteria provided |
| - GRCh37:
- Chr1:145324298-146018577
| ANKRD34A, ANKRD35, CD160, GPR89A, HJV, ITGA10, LIX1L, NBPF10, NUDT17, PDZK1, PEX11B, PIAS3, POLR3C, POLR3GL, RBM8A, RNF115, TXNIP | | Microcephaly, Moderate global developmental delay, Pes valgus, Failure to thrive, Pes cavus, Proportionate short stature, Concomitant strabismus | Uncertain significance (Nov 13, 2020) | criteria provided, single submitter |
| - GRCh37:
- ChrX:6624655-7894210
| PNPLA4, PUDP, STS, VCX | | Atonic seizure, Status epilepticus, Microcephaly
| Uncertain significance (Nov 26, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr3:142729607-157921084
| AADAC, AADACL2, AGTR1, ANKUB1, ARHGEF26, C3orf33, CCNL1, CHST2, CLRN1, COMMD2, CP, CPA3, CPB1, DHX36, DIPK2A, EIF2A, ERICH6, GMPS, GPR149, GPR171, GPR87, GYG1, HLTF, HPS3, IGSF10, KCNAB1, LEKR1, LINC02877, MBNL1, MED12L, MINDY4B, MME, P2RY1, P2RY12, P2RY13, P2RY14, PFN2, PLCH1, PLOD2, PLSCR1, PLSCR2, PLSCR4, PLSCR5, PTX3, RAP2B, RNF13, RSRC1, SELENOT, SERP1, SHOX2, SIAH2, SLC33A1, SLC9A9, SSR3, SUCNR1, TIPARP, TM4SF1, TM4SF18, TM4SF4, TSC22D2, U2SURP, VEPH1, WWTR1, ZIC1, ZIC4 | | Microcephaly, Attention deficit hyperactivity disorder, Brachycephaly
| Pathogenic (Jun 30, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr1:220366699
- GRCh38:
- Chr1:220193357
| RAB3GAP2 | R385C | Microphthalmia, Developmental cataract, Persistent pupillary membrane, Microcephaly | Uncertain significance (Dec 13, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:67888643
- GRCh38:
- Chr11:68121176
| CHKA | M1T | Seizure, Microcephaly, Intellectual disability, severe
| Uncertain significance (Oct 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:67833357
- GRCh38:
- Chr11:68065890
| CHKA | F201L, F219L, F303L, F323L, F341L, F351L | Seizure, Microcephaly, Intellectual disability, severe
| Likely pathogenic (Oct 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:67888630-67888631
- GRCh38:
- Chr11:68121163-68121164
| CHKA | C6fs | Seizure, Microcephaly, Intellectual disability, severe
| Likely pathogenic (Oct 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:67842234
- GRCh38:
- Chr11:68074767
| CHKA | P176S, P194S, P204S, P54S, P72S | Seizure, Microcephaly, Intellectual disability, severe
| Likely pathogenic (Oct 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:67864527
- GRCh38:
- Chr11:68097060
| CHKA | R141W, R19W | Seizure, Microcephaly, Intellectual disability, severe
| Likely pathogenic (Oct 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr9:95021199
- GRCh38:
- Chr9:92258917
| IARS1 | D610E, D623E, D651E, D658E, D672E | Global developmental delay, Microcephaly | Uncertain significance | no assertion criteria provided |
| - GRCh37:
- Chr9:95048023
- GRCh38:
- Chr9:92285741
| IARS1 | E152fs, E193fs, E214fs | Global developmental delay, Microcephaly | Likely pathogenic | no assertion criteria provided |
| - GRCh37:
- Chr20:10286825
- GRCh38:
- Chr20:10306177
| SNAP25 | K201* | Optic atrophy, Stereotypic movement disorder, Seizure, Global developmental delay, Microcephaly, Early infantile epileptic encephalopathy with suppression bursts
| Conflicting interpretations of pathogenicity (Mar 22, 2021) | criteria provided, conflicting interpretations |
| - GRCh37:
- Chr15:45694840
- Chr15:45702607
- GRCh38:
- Chr15:45402642
- Chr15:45410409
| AFG2B, AFG2B | F71L, L438P | Hearing impairment, Visual impairment, Seizure, Microcephaly, Spastic tetraparesis, Dystonic disorder, Global developmental delay | Likely pathogenic (Jul 27, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr7:99695858
- GRCh38:
- Chr7:100098235
| MCM7 | G259A, G83A | Astigmatism, Microcephaly, Psychomotor retardation, Progeroid facial appearance, Anisometropia, Trichiasis, Hypermetropia, Microphthalmia, Deeply set eye, Meier-Gorlin syndrome | Pathogenic (Jun 23, 2021) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr15:99459265-99459266
- GRCh38:
- Chr15:98916036-98916037
| IGF1R | P637fs | Growth delay due to insulin-like growth factor I resistance, Microcephaly | Likely pathogenic (Jan 11, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr9:131745626-131745627
- GRCh38:
- Chr9:128983347-128983348
| NUP188 | C617fs | Sandestig-stefanova syndrome, Microcephaly | Likely pathogenic (Dec 14, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr9:131760903
- GRCh38:
- Chr9:128998624
| NUP188 | | Sandestig-stefanova syndrome, Microcephaly | Likely pathogenic (Dec 14, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr14:99641223-99641235
- GRCh38:
- Chr14:99174886-99174898
| BCL11B | A575fs, A576fs, A646fs, A647fs | Microcephaly | Likely pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr1:197112655
- GRCh38:
- Chr1:197143525
| ASPM | R243* | Microcephaly | Pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr10:115910972
- GRCh38:
- Chr10:114151213
| CCDC186 | S256* | Developmental stagnation, Microcephaly, Failure to thrive, Seizure, Growth delay, EEG with spike-wave complexes, Pulmonary valve stenosis, Severe global developmental delay, Relative macrocephaly, Hypothyroidism | Pathogenic (Mar 23, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr10:122664156-122664159
- GRCh38:
- Chr10:120904644-120904647
| WDR11 | | Microcephaly, not provided | Pathogenic (Jul 5, 2022) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr10:122630821
- GRCh38:
- Chr10:120871309
| WDR11 | N480fs | Microcephaly | Pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr10:122662745
- GRCh38:
- Chr10:120903233
| WDR11 | | Microcephaly | Pathogenic | criteria provided, single submitter |
| - GRCh37:
- Chr10:122626642
- GRCh38:
- Chr10:120867130
| WDR11 | Q419* | Microcephaly | Pathogenic (May 11, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr3:112727085
- GRCh38:
- Chr3:113008238
| NEPRO | A187T, A223T, A254T, A279T, A293T, A320T, A390T | Microcephaly, Abnormal cerebral white matter morphology | Uncertain significance (May 12, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr3:112724558
- GRCh38:
- Chr3:113005711
| NEPRO | G307V, G343V, G374V, G399V, G413V, G440V, G510V | Microcephaly, Abnormal cerebral white matter morphology | Uncertain significance (May 12, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr10:94409743
- GRCh38:
- Chr10:92649986
| KIF11 | | Microcephaly | Pathogenic (Nov 25, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr17:28445129
- GRCh38:
- Chr17:30118111
| NSRP1 | Q18* | not provided | Uncertain significance (Jul 21, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr17:28512285-28512286
- GRCh38:
- Chr17:30185267-30185268
| NSRP1 | K371fs, K425fs | Neurodevelopmental disorder with spasticity, seizures, and brain abnormalities, Seizure, Severe global developmental delay, Microcephaly, Spasticity | Pathogenic (Aug 18, 2022) | no assertion criteria provided |
| - GRCh37:
- Chr17:28512372-28512375
- GRCh38:
- Chr17:30185354-30185357
| NSRP1 | E401fs, E455fs | Neurodevelopmental disorder with spasticity, seizures, and brain abnormalities, Seizure, Severe global developmental delay, Microcephaly, Spasticity | Pathogenic (Aug 18, 2022) | no assertion criteria provided |
| - GRCh37:
- Chr12:3619010-5221363
| TIGAR, AKAP3, C12orf4, CCND2, CRACR2A, DYRK4, FGF23, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, PARP11, PRMT8, RAD51AP1 | | Global developmental delay, Microcephaly | Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- ChrX:41553564-41696352
| CASK, GPR34, GPR82 | | Neurodevelopmental delay, Microcephaly | Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- ChrX:41342834-43901936
| CASK, GPR34, GPR82, MAOA, MAOB, NDP | | Global developmental delay, Microcephaly | Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr1:240554955-247342593
| AHCTF1, AKT3, CATSPERE, CEP170, CNST, COX20, CHML, DESI2, EFCAB2, EXO1, KMO, LINC02897, MAP1LC3C, OPN3, PLD5, RGS7, SCCPDH, ADSS2, FH, FMN2, GREM2, HNRNPU, KIF26B, SDCCAG8, SMYD3, SPMIP3, TFB2M, WDR64, ZBTB18, ZNF124, ZNF669, ZNF670, ZNF695 | | Cerebellar vermis hypoplasia, Seizure, Corpus callosum, agenesis of, Global developmental delay, Microcephaly, Developmental regression
| Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr7:116297277-126370694
| POT1, PTPRZ1, RNF133, RNF148, RNU2-1, SLC13A1, SPAM1, ST7, TSPAN12, WASL, WNT16, WNT2, ST7-OT3, ST7-OT4, TAS2R16, TMEM229A, AASS, ANKRD7, ASB15, ASZ1, CADPS2, CAPZA2, CFTR, CPED1, CTTNBP2, FAM3C, FEZF1, GPR37, GRM8, HYAL4, ING3, IQUB, KCND2, LMOD2, LSM8, MET, NDUFA5 | | Short stature, Global developmental delay, Microcephaly
| Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr5:136409875-137739167
| BRD8, CDC23, CDC25C, FAM13B, FAM53C, GFRA3, HNRNPA0, KDM3B, KIF20A, KLHL3, MYOT, NME5, PKD2L2, SPOCK1, WNT8A | | Neurodevelopmental delay, Microcephaly | Pathogenic (Mar 15, 2021) | criteria provided, single submitter |
| - GRCh37:
- ChrX:61091-787353
| | | Generalized hypotonia, Lissencephaly, Microcephaly, Corpus callosum, agenesis of | Pathogenic (Oct 1, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr4:1957823
- GRCh38:
- Chr4:1956096
| NSD2 | W930* | Microcephaly | Uncertain significance (Feb 9, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr11:14496127
- GRCh38:
- Chr11:14474581
| COPB1 | F551V | Baralle-Macken syndrome, Microcephaly, Cataract, Immunodeficiency, Intellectual disability, severe | Pathogenic/Likely pathogenic (Apr 9, 2021) | no assertion criteria provided |
| - GRCh37:
- Chr11:14504577
- GRCh38:
- Chr11:14483031
| COPB1 | | Baralle-Macken syndrome, Microcephaly, Cataract, Intellectual disability, severe | Pathogenic/Likely pathogenic (Apr 6, 2021) | no assertion criteria provided |
| - GRCh37:
- Chr17:65908927
- GRCh38:
- Chr17:67912811
| BPTF | S1643R, S1769R | Microcephaly, Global developmental delay | Uncertain significance (Jul 17, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr3:183963598
- GRCh38:
- Chr3:184245810
| ALG3 | T19P, T67P | Seizure, Microcephaly, Intellectual disability
| Uncertain significance (Jun 11, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr1:245809434
- GRCh38:
- Chr1:245646132
| KIF26B | R704C | Microcephaly | Uncertain significance (Jun 11, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr1:163306574
- GRCh38:
- Chr1:163336784
| NUF2 | I124S | Short stature, Microcephaly | Pathogenic (Dec 22, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr9:133755890
- GRCh38:
- Chr9:130880503
| ABL1 | V506A, V525A | Congenital heart defects and skeletal malformations syndrome, Microcephaly | Pathogenic/Likely pathogenic (Jan 1, 2020) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr13:110825067
- GRCh38:
- Chr13:110172720
| COL4A1 | G1186S | Brain small vessel disease 1 with or without ocular anomalies, Microcephaly | Likely pathogenic (May 20, 2020) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr6:87966803-87966806
- GRCh38:
- Chr6:87257085-87257088
| ZNF292 | V1014fs, V1154fs | Short stature, Microcephaly, Intellectual disability, mild
| Likely pathogenic (Nov 16, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr1:229623339
- GRCh38:
- Chr1:229487592
| NUP133 | Q406* | Seizure, Microcephaly, Intellectual disability
| Uncertain significance (Dec 13, 2019) | no assertion criteria provided |
| - GRCh37:
- Chr19:15376303-15376304
- GRCh38:
- Chr19:15265492-15265493
| BRD4 | P237fs | Microcephaly, Intellectual disability | Likely pathogenic (Dec 13, 2019) | no assertion criteria provided |
| - GRCh37:
- Chr21:46641999
- GRCh38:
- Chr21:45222084
| ADARB1 | A665S, A705S | Microcephaly, Encephalopathy, Abnormal CNS myelination
| Benign | criteria provided, single submitter |
| - GRCh37:
- Chr12:12278317-12278318
- GRCh38:
- Chr12:12125383-12125384
| LRP6 | S1455fs | Microcephaly, Short stature, Sparse scalp hair, Generalized hypopigmentation, High myopia | Uncertain significance (Dec 13, 2021) | criteria provided, single submitter |
| - GRCh37:
- Chr7:95911538-97301820
| DLX5, DLX6, SDHAF3, SEM1, SLC25A13 | | Microcephaly, Intellectual disability | Likely pathogenic (Apr 8, 2020) | no assertion criteria provided |
| - GRCh37:
- Chr6:101287058-117013245
| NR2E1, NT5DC1, OSTM1, PRDM1, PREP, QRSL1, REV3L, RSPH4A, CCN6, CD164, CDC40, CDK19, AMD1, ARMC2, RTN4IP1, RWDD1, RFPL4B, RPF2, PDSS2, POPDC3, PPIL6, AFG1L, AK9, ASCC3, ATG5, BEND3, BVES, CALHM4, CALHM5, CALHM6, CEP57L1, COL10A1, CRYBG1, DDO, DSE, FAM229B, FIG4, FOXO3, FRK, FYN, GPR6, GRIK2, GTF3C6, HACE1, HDAC2, HS3ST5, KPNA5, LAMA4, LIN28B, MARCKS, METTL24, MFSD4B, MICAL1, MTRES1, SCML4, SEC63, SESN1, SLC16A10, SLC22A16, SMPD2, SNX3, SOBP, TRAF3IP2, TRAF3IP2-AS1, TRAPPC3L, TSPYL1, TSPYL4, TUBE1, WASF1, ZBTB24, ZUP1 | | Microcephaly, Intellectual disability | Pathogenic (Apr 8, 2020) | no assertion criteria provided |
| - GRCh37:
- Chr6:96015038-97262669
| MANEA, UFL1, FHL5, FUT9, GPR63 | | Microcephaly, Intellectual disability | Likely pathogenic (Apr 8, 2020) | no assertion criteria provided |
| - GRCh37:
- Chr17:36243028-36593198
| ARHGAP23, GPR179, MRPL45, SOCS7, TBC1D3, TBC1D3F | | Microcephaly, Short stature | Uncertain significance (Feb 14, 2020) | no assertion criteria provided |
| - GRCh37:
- Chr4:186337011
- GRCh38:
- Chr4:185415857
| CFAP96, UFSP2 | V115E | Abnormality of the nervous system, Olivopontocerebellar hypoplasia, Focal-onset seizure, Epileptic encephalopathy, Severe global developmental delay, Developmental and epileptic encephalopathy, 1, UFSP2-related neurodevelopmental disorder, Developmental and epileptic encephalopathy 106, not provided
| Conflicting interpretations of pathogenicity (Mar 1, 2023) | criteria provided, conflicting interpretations |
| | CAPN15 | | imperforated anus, Horseshoe kidney, Microcephaly, Congenital heart disease, Failure to thrive, Seziures, Hearing loss, Sacral dysplasia, Congenital ocular coloboma, Dysmorphism, bilateral optic disc gliosis ...see more | Likely pathogenic (Jun 20, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr22:22127164
- GRCh38:
- Chr22:21772875
| MAPK1 | E322Q | Short stature, Atypical behavior, Microcephaly, Abnormal facial shape, Specific learning disability, Intellectual disability, not provided | Pathogenic (May 2, 2023) | criteria provided, multiple submitters, no conflicts |
| - GRCh37:
- Chr22:22162017
- GRCh38:
- Chr22:21807728
| MAPK1 | H80Y | Short stature, Atypical behavior, Microcephaly, Abnormal facial shape, Specific learning disability, Intellectual disability
| Pathogenic (Apr 1, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr22:22162034
- GRCh38:
- Chr22:21807745
| MAPK1 | I74N | Short stature, Atypical behavior, Microcephaly, Abnormal facial shape, Specific learning disability, Intellectual disability
| Pathogenic (Apr 1, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr6:33740481
- GRCh38:
- Chr6:33772704
| LEMD2 | S177F, S346F, S479F | Supernumerary tooth, Reduced bone mineral density, Deviated nasal septum, Prominent superficial veins, Dental crowding, Thin skin, Narrow mouth, Proptosis, Growth delay, Microcephaly, Short claviclesTriangular face, Lipoatrophy, Progeroid facial appearance, Multiple unerupted teeth, Abnormal nasal dorsum morphology, Intention tremor, Short stature, Micrognathia, ...see more | Likely pathogenic (Mar 21, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr12:13768481-13768488
- GRCh38:
- Chr12:13615547-13615554
| GRIN2B | L480fs | Hypotonia, Sleep disturbance, Atypical behavior, Self-injurious behavior, Intellectual disability, autosomal dominant 6, Microcephaly, Intellectual disability | Pathogenic (Dec 12, 2019) | criteria provided, single submitter |
| - GRCh37:
- Chr9:96160235-97428496
| BARX1, FAM120A, FAM120AOS, FBP1, FBP2, MFSD14B, MIRLET7A1, MIRLET7D, MIRLET7F1, NUTM2F, PHF2, PTPDC1, ZNF169 | | Delayed gross motor development, Mild short stature, Expressive language delay, Hiatus hernia, Delayed fine motor development, Microcephaly
| Likely pathogenic (May 4, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr8:126369507
- GRCh38:
- Chr8:125357265
| NSMCE2 | D155E | Dysmorphic features, Decreased response to growth hormone stimulation test, Short stature, Global developmental delay, Microcephaly | Uncertain significance | criteria provided, single submitter |
| - GRCh37:
- Chr3:7494299
- GRCh38:
- Chr3:7452612
| GRM7 | E394K | Bilateral multifocal epileptiform discharges, Global developmental delay, Microcephaly
| Pathogenic | criteria provided, single submitter |
| - GRCh37:
- ChrX:41206242
- GRCh38:
- ChrX:41346989
| DDX3X | S583fs, S567fs, S397fs | Delayed speech and language development, Global developmental delay, Microcephaly
| Pathogenic (Mar 3, 2020) | criteria provided, single submitter |
| - GRCh37:
- Chr2:148710290-149021799
| ORC4, MBD5 | | Microcephaly | Pathogenic | no assertion criteria provided |
| - GRCh37:
- ChrX:41150139-43976458
| MAOB, DDX3X, NDP, GPR82, MAOA, NYX, CASK, GPR34 | | Microcephaly | Pathogenic | no assertion criteria provided |