taxon
Print coronavirus genome metadata by accession
datasets summary virus genome - Print coronavirus genome metadata by accession or taxon
Print coronavirus genome metadata (data report) by nucleotide accession or taxon. The data report is returned in JSON Lines format.
Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.
datasets summary virus genome accession NC_045512.2
datasets summary virus genome taxon sars-cov-2 --host dog
-a, --annotated only include viral genomes with annotation
--api-key string NCBI Datasets API Key
--as-json-lines stream results as newline delimited JSON-Lines
--complete-only only include complete coronavirus data reports
--geo-location string limit to coronavirus genomes isolated from a specified geographic location (continent, country or U.S. state)
-h, --help help for genome
--host string limit to coronavirus genomes isolated from a specified host (NCBI Taxonomy ID, scientific or common name at any taxonomic rank)
--limit string limit the number of genome summaries returned
* "all": returns all matching virus data reports
* "none": returns only the number of matching virus data reports
* a number: returns the specified number of matching data reports
(default "all")
--lineage string limit to SARS-CoV-2 genomes classified as the specified lineage (variant) by pangolin using the pangoLEARN algorithm
--no-progressbar hide progress bar
--refseq limit to RefSeq coronavirus genomes
--released-since string limit to coronavirus genomes released after a specified date (MM/DD/YYYY)
--updated-since string limit to coronavirus genomes updated after a specified date (MM/DD/YYYY)
Print coronavirus genome metadata by accession
Print coronavirus genome metadata by accession