Genome assembly ASM3579767v1
- NCBI RefSeq assembly
- GCF_035797675.1
- Submitted GenBank assembly
- GCA_035797675.1
- Taxon
- Klebsiella aerogenes
- Strain
- Gar NS 16
- WGS project
- JAMWTI01
- Submitter
- NEOSTAR_Indo-UK Project on AMR
- Date
- Jan 17, 2024
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.9 Mb | 4.9 Mb |
Total ungapped length | 4.9 Mb | 4.9 Mb |
Number of contigs | 51 | 51 |
Contig N50 | 500.7 kb | 500.7 kb |
Contig L50 | 3 | 3 |
GC percent | 55 | 55 |
Genome coverage | 30.0x | 30.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN29057980
- Description
- Microbe sample from Klebsiella aerogenes
- Submitter
- ICAR-National Institute of Veterinary Epidemiology and Disease Informatics
- Strain
- Gar NS 16
- Host
- Sus scrofa cristatus
- Collection date
- Feb 20, 2020
- Geographic location
- India: Guwahati, Garchuk Assam
- Sample type
- Whole organism
- Isolation source
- swine
- Biomaterial provider
- ICAR-NIVEDI
- Collected by
- Dr. Rakshit & Dr. Suresh
- Identified by
- Dr. Rakshit & Dr. Suresh
- Sample name
- 2481
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2022-06-15T06:23:05.423
- Publication date
- 2022-11-19T00:50:12.727
- Last updated
- 2022-11-19T00:50:12.727
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.14.1
Additional genomes
Browse all Klebsiella aerogenes genomes (1875)BioProject
PRJNA636233Drug resistant Gram positive and Gram Negative Bacteria leading to antimicrobial resistance across the sectors in One Health perspective Genome sequencing and assembly
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Jan 18, 2024 | Jun 17, 2022 |
Genes | 4,724 | 4,714 |
Protein-coding | 4,534 | 4,530 |
Software version | 6.6 | 6.1 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 96.15% (49th Percentile, dark blue bar)
Contamination: 1.52%
Completeness of Klebsiella aerogenes RefSeq assemblies
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter aerogenes CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Klebsiella aerogenes
- Submitted species name
- Klebsiella aerogenes
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000215745.1 | GCA_000215745.1 |
Organism name | Klebsiella aerogenes KCTC 2190 | Klebsiella aerogenes |
Type category | type | type |
ANI | 98.83% | 98.83% |
Assembly coverage | 95.4% | 95.4% |
Type assembly coverage | 89.39% | 89.39% |
Chromosomes
Note: This contig-level genome assembly includes 51 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_035797675.1 | GCF_035797675.1 | ASM3579767v1 | Contig | Jan 17, 2024 |