Genome assembly ASM4026097v1
Actions
- Submitted GenBank assembly
- GCA_040260975.1
- Taxon
- Acidimicrobiales bacterium
- Isolate
- SFB_27S_18OctNov_coas_49
- WGS project
- JBDQOX01
- Submitter
- Stanford University
- Date
- Jun 21, 2024
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- fragmented assembly
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 2.1 Mb |
Total ungapped length | 2.1 Mb |
Number of contigs | 464 |
Contig N50 | 4.5 kb |
Contig L50 | 156 |
GC percent | 66 |
Genome coverage | 17.0x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN37158395
- Description
- MIMAG Metagenome-assembled Genome sample from Acidimicrobiales bacterium
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- Stanford University
- Isolate
- SFB_27S_18OctNov_coas_49
- Collection date
- 2018-10-17/2018-11-15
- Depth
- 2 meter
- Broad-scale environmental context
- estuarine biome
- Local-scale environmental context
- channel
- Environmental medium
- estuarine water
- Geographic location
- USA: California, San Francisco Bay
- Isolation source
- estuary water column
- Latitude and longitude
- 37.61833333 N 122.2916667 W
- Size fraction selected
- 0.22-80 micrometer
- Derived from
- This BioSample is a metagenomic assembly obtained from the estuary metagenome BioSample: SAMN38497329, SAMN38497328
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- estuary metagenome
- Sample name
- SFB_27S_18OctNov_coassembly_mh_bin_49_MF
- Models
- MIMAG.water
- Package
- MIMAG.water.6.0
- Submission date
- 2023-08-26T23:29:09.060
- Publication date
- 2023-08-26T00:00:00.000
- Last updated
- 2024-05-22T18:32:57.872
Assembly methods
- Sequencing technology
- Illumina NovaSeq
- Assembly method
- MEGAHIT v. 1.1.3
Additional genomes
Browse all Acidimicrobiales bacterium genomes (1380)Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Acidimicrobiales bacterium
- Submitted species name
- Acidimicrobiales bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_039532525.1 |
Organism name | n/a | Dactylosporangium salmoneum |
Type category | n/a | type |
ANI | n/a | 82.52% |
Assembly coverage | n/a | 0.11% |
Type assembly coverage | n/a | 0.02% |
Chromosomes
Note: This contig-level genome assembly includes 464 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_040260975.1 | n/a | ASM4026097v1 | Contig | Jun 21, 2024 |