Genome assembly ASM4026097v1

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Submitted GenBank assembly
GCA_040260975.1
Taxon
Acidimicrobiales bacterium
Isolate
SFB_27S_18OctNov_coas_49
WGS project
JBDQOX01
Submitter
Stanford University
Date
Jun 21, 2024

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • fragmented assembly
  • genus undefined

Assembly statistics

GenBank
Genome size2.1 Mb
Total ungapped length2.1 Mb
Number of contigs464
Contig N504.5 kb
Contig L50156
GC percent66
Genome coverage17.0x
Assembly levelContig

Sample details

BioSample ID
SAMN37158395
Description
MIMAG Metagenome-assembled Genome sample from Acidimicrobiales bacterium
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
Stanford University
Isolate
SFB_27S_18OctNov_coas_49
Collection date
2018-10-17/2018-11-15
Depth
2 meter
Broad-scale environmental context
estuarine biome
Local-scale environmental context
channel
Environmental medium
estuarine water
Geographic location
USA: California, San Francisco Bay
Isolation source
estuary water column
Latitude and longitude
37.61833333 N 122.2916667 W
Size fraction selected
0.22-80 micrometer
Derived from
This BioSample is a metagenomic assembly obtained from the estuary metagenome BioSample: SAMN38497329, SAMN38497328
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
estuary metagenome
Sample name
SFB_27S_18OctNov_coassembly_mh_bin_49_MF
Models
MIMAG.water
Package
MIMAG.water.6.0
Submission date
2023-08-26T23:29:09.060
Publication date
2023-08-26T00:00:00.000
Last updated
2024-05-22T18:32:57.872

Assembly methods

Sequencing technology
Illumina NovaSeq
Assembly method
MEGAHIT v. 1.1.3

BioProject

PRJNA819089

South Bay USGS Station 27 microbial time series San Francisco Bay, CA, USA

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Acidimicrobiales bacterium
Submitted species name
Acidimicrobiales bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_039532525.1
Organism name

n/a

Dactylosporangium salmoneum
Type category

n/a

type
ANI

n/a

82.52%
Assembly coverage

n/a

0.11%
Type assembly coverage

n/a

0.02%

Chromosomes

Note: This contig-level genome assembly includes 464 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_040260975.1

n/a

ASM4026097v1ContigJun 21, 2024