Genome assembly ZE-17mar17-70

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Submitted GenBank assembly
GCA_947503615.1
Taxon
Candidatus Nanopelagicus limnes
Isolate
ZE-17mar17-70
WGS project
CANNEM01
Submitter
University of Zurich
Date
Dec 4, 2022

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome

Assembly statistics

GenBank
Genome size1000 kb
Total ungapped length1000 kb
Number of contigs128
Contig N5010.4 kb
Contig L5031
GC percent41.5
Genome coverage10.0x
Assembly levelContig
View sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA112176474
Description
ZE-17mar17-70
Comment
ZE-17mar17-70
Submitter
EBI
ENA-CHECKLIST
ERC000047
ENA-FIRST-PUBLIC
Nov 30, 2022
ENA-LAST-UPDATE
Nov 30, 2022
External Id
SAMEA112176474
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-11-30T16:23:36Z
INSDC last update
2022-11-30T16:23:36Z
INSDC status
public
Submitter Id
ZE-17mar17-70
Assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
Assembly software
MEGAHIT
Binning parameters
coverage and kmer
Binning software
MetaBAT2
Broad-scale environmental context
freshwater ecosystem
Collection date
Mar 17, 2017
Completeness score
66.58
Completeness software
checkm
Contamination score
3.53
Environmental medium
freshwater lake biome
Geographic location
Switzerland
Geographic location (latitude)
47.3
Geographic location (longitude)
8.566667
Isolation source
lake water
Local environmental context
freshwater lake biome
Metagenomic source
lake water metagenome
Project name
PRJNA428721
Sample derived from
SRS2837656
Sample name
ZE-17mar17-70
Taxonomic identity marker
multi-marker approach
SRA
ERS14286315
Models
Generic
Package
Generic.1.0
Submission date
2022-12-01T08:23:58.823
Publication date
2022-11-30T00:00:00.000
Last updated
2022-11-30T20:56:05.000

Assembly methods

Sequencing technology
Illumina HiSeq 2500
Assembly method
MEGAHIT

Additional genomes

Browse all Candidatus Nanopelagicus limnes genomes (2)

BioProject

PRJNA428721

Freshwater metagenomes from Lake Zurich, Switzerland

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
status_na
Submitted organism name
Candidatus Nanopelagicus limnes
Submitted species name
Candidatus Nanopelagicus limnes

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

n/a

Organism name

n/a

n/a

Type category

n/a

n/a

ANI

n/a

n/a

Assembly coverage

n/a

n/a

Type assembly coverage

n/a

n/a

Chromosomes

Note: This contig-level genome assembly includes 128 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_947503615.1

n/a

ZE-17mar17-70ContigDec 4, 2022