Genome assembly ZE-17mar17-70
- Submitted GenBank assembly
- GCA_947503615.1
- Taxon
- Candidatus Nanopelagicus limnes
- Isolate
- ZE-17mar17-70
- WGS project
- CANNEM01
- Submitter
- University of Zurich
- Date
- Dec 4, 2022
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
Assembly statistics
GenBank | |
---|---|
Genome size | 1000 kb |
Total ungapped length | 1000 kb |
Number of contigs | 128 |
Contig N50 | 10.4 kb |
Contig L50 | 31 |
GC percent | 41.5 |
Genome coverage | 10.0x |
Assembly level | Contig |
View sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMEA112176474
- Description
- ZE-17mar17-70
- Comment
- ZE-17mar17-70
- Submitter
- EBI
- ENA-CHECKLIST
- ERC000047
- ENA-FIRST-PUBLIC
- Nov 30, 2022
- ENA-LAST-UPDATE
- Nov 30, 2022
- External Id
- SAMEA112176474
- INSDC center alias
- BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
- INSDC center name
- BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
- INSDC first public
- 2022-11-30T16:23:36Z
- INSDC last update
- 2022-11-30T16:23:36Z
- INSDC status
- public
- Submitter Id
- ZE-17mar17-70
- Assembly quality
- Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
- Assembly software
- MEGAHIT
- Binning parameters
- coverage and kmer
- Binning software
- MetaBAT2
- Broad-scale environmental context
- freshwater ecosystem
- Collection date
- Mar 17, 2017
- Completeness score
- 66.58
- Completeness software
- checkm
- Contamination score
- 3.53
- Environmental medium
- freshwater lake biome
- Geographic location
- Switzerland
- Geographic location (latitude)
- 47.3
- Geographic location (longitude)
- 8.566667
- Isolation source
- lake water
- Local environmental context
- freshwater lake biome
- Metagenomic source
- lake water metagenome
- Project name
- PRJNA428721
- Sample derived from
- SRS2837656
- Sample name
- ZE-17mar17-70
- Taxonomic identity marker
- multi-marker approach
- SRA
- ERS14286315
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2022-12-01T08:23:58.823
- Publication date
- 2022-11-30T00:00:00.000
- Last updated
- 2022-11-30T20:56:05.000
Assembly methods
- Sequencing technology
- Illumina HiSeq 2500
- Assembly method
- MEGAHIT
Additional genomes
Browse all Candidatus Nanopelagicus limnes genomes (2)BioProject
PRJNA428721Freshwater metagenomes from Lake Zurich, Switzerland
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- status_na
- Submitted organism name
- Candidatus Nanopelagicus limnes
- Submitted species name
- Candidatus Nanopelagicus limnes
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | n/a |
Organism name | n/a | n/a |
Type category | n/a | n/a |
ANI | n/a | n/a |
Assembly coverage | n/a | n/a |
Type assembly coverage | n/a | n/a |
Chromosomes
Note: This contig-level genome assembly includes 128 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_947503615.1 | n/a | ZE-17mar17-70 | Contig | Dec 4, 2022 |