Genome assembly ASM209400v1
- NCBI RefSeq assembly
- GCF_002094005.1
- Submitted GenBank assembly
- GCA_002094005.1
- Taxon
- Streptococcus salivarius
- Strain
- 85-06 S24
- WGS project
- LXOU01
- Submitter
- State University of Campinas
- Date
- Apr 17, 2017
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 2.3 Mb | 2.3 Mb |
Total ungapped length | 2.3 Mb | 2.3 Mb |
Number of contigs | 13 | 13 |
Contig N50 | 1.4 Mb | 1.4 Mb |
Contig L50 | 1 | 1 |
GC percent | 40 | 40 |
Genome coverage | 10.0x | 10.0x |
Assembly level | Contig | Contig |
Sample details
- BioSample ID
- SAMN04942660
- Description
- Streptococcus salivarius 85-06 S24
- Submitter
- State University of Campinas
- Strain
- 85-06 S24
- Latitude and longitude
- 22.43 S 47.38 W
- Host disease
- Sepsis
- Host
- Homo sapiens
- Geographic location
- Brazil
- Collection date
- 2013-01
- Collected by
- Piracicaba Dental School, University of Campinas
- Sample name
- S24
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2016-05-04T12:28:04.860
- Publication date
- 2016-09-30T00:50:35.580
- Last updated
- 2016-09-30T00:50:35.580
Assembly methods
- Sequencing technology
- Illumina MiSeq
- Assembly method
- Velvet v. 1.2.07
Additional genomes
Browse all Streptococcus salivarius genomes (414)BioProject
PRJNA320256Streptococcus Genome sequencing and assembly
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_002094005.1-RS_2024_04_02 |
Date | Apr 2, 2024 |
Genes | 2,120 |
Protein-coding | 2,008 |
Software version | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 98.02% (70th Percentile, dark blue bar)
Contamination: 1.25%
Completeness of Streptococcus salivarius RefSeq assemblies
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Streptococcus salivarius CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Streptococcus salivarius
- Submitted species name
- Streptococcus salivarius
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_900636435.1 | GCA_900636435.1 |
Organism name | Streptococcus salivarius | Streptococcus salivarius |
Type category | type | type |
ANI | 96.23% | 96.23% |
Assembly coverage | 85.99% | 85.99% |
Type assembly coverage | 87.89% | 87.89% |
Chromosomes
Note: This contig-level genome assembly includes 13 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_002094005.1 | GCF_002094005.1 | ASM209400v1 | Contig | Apr 17, 2017 |