Genome assembly ASM2352371v1
- NCBI RefSeq assembly
- GCF_023523715.1
- Submitted GenBank assembly
- GCA_023523715.1
- Taxon
- Enterococcus casseliflavus
- Strain
- SP11
- Submitter
- Robert Koch-Institut
- Date
- May 23, 2022
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 3.3 Mb | 3.3 Mb |
Total ungapped length | 3.3 Mb | 3.3 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 3.3 Mb | 3.3 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 1 | 1 |
Contig N50 | 3.3 Mb | 3.3 Mb |
Contig L50 | 1 | 1 |
GC percent | 43 | 43 |
Genome coverage | 1.0x | 1.0x |
Assembly level | Complete Genome | Complete Genome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN13955256
- Description
- Microbe sample from Enterococcus casseliflavus
- Submitter
- Robert Koch-Institut
- Strain
- SP11
- Host
- Gallus gallus
- Isolation source
- cloaca
- Collection date
- Aug 23, 2012
- Geographic location
- Germany
- Sample type
- swap
- Sample name
- MEC_1164-1
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2020-01-31T09:23:04.050
- Publication date
- 2022-01-31T00:50:26.307
- Last updated
- 2022-01-31T00:50:26.307
Assembly methods
- Sequencing technology
- Oxford Nanopore MiniION
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- Unicycler v. 0.4.7
Additional genomes
Browse all Enterococcus casseliflavus genomes (243)Publications
R Al-Kahachi, et al.
OK Islam, et al.
A Hashish, et al.
L Hidi, et al.
MS Gaissmaier, et al.
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_023523715.1-RS_2024_05_27 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | May 27, 2024 | May 6, 2020 |
Genes | 3,185 | 3,184 |
Protein-coding | 3,056 | 3,030 |
Software version | 6.7 | 4.11 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 96.1% (16th Percentile, dark blue bar)
Contamination: 1.98%
Completeness of Enterococcus casseliflavus RefSeq assemblies
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterococcus casseliflavus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Enterococcus casseliflavus
- Submitted species name
- Enterococcus casseliflavus
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_016727345.1 | GCA_016727345.1 |
Organism name | Enterococcus casseliflavus | Enterococcus casseliflavus |
Type category | type | type |
ANI | 98.41% | 98.41% |
Assembly coverage | 89.07% | 89.07% |
Type assembly coverage | 83.77% | 83.77% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP053180.1 | NZ_CP053180.1 | 3,337,345 | 43 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_023523715.1 | GCF_023523715.1 | ASM2352371v1 | Complete Genome | May 23, 2022 |