Genome assembly ASM2352371v1

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NCBI RefSeq assembly
GCF_023523715.1
Submitted GenBank assembly
GCA_023523715.1
Taxon
Enterococcus casseliflavus
Strain
SP11
Submitter
Robert Koch-Institut
Date
May 23, 2022

Assembly statistics

RefSeqGenBank
Genome size3.3 Mb3.3 Mb
Total ungapped length3.3 Mb3.3 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N503.3 Mb3.3 Mb
Scaffold L5011
Number of contigs11
Contig N503.3 Mb3.3 Mb
Contig L5011
GC percent4343
Genome coverage1.0x1.0x
Assembly levelComplete GenomeComplete Genome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMN13955256
Description
Microbe sample from Enterococcus casseliflavus
Submitter
Robert Koch-Institut
Strain
SP11
Host
Gallus gallus
Isolation source
cloaca
Collection date
Aug 23, 2012
Geographic location
Germany
Sample type
swap
Sample name
MEC_1164-1
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2020-01-31T09:23:04.050
Publication date
2022-01-31T00:50:26.307
Last updated
2022-01-31T00:50:26.307

Assembly methods

Sequencing technology
Oxford Nanopore MiniION
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
Unicycler v. 0.4.7

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_023523715.1-RS_2024_05_27NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateMay 27, 2024May 6, 2020
Genes3,1853,184
Protein-coding3,0563,030
Software version6.74.11

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.2)

Completeness: 96.1% (16th Percentile, dark blue bar)

Contamination: 1.98%

Completeness of Enterococcus casseliflavus RefSeq assemblies

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterococcus casseliflavus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Enterococcus casseliflavus
Submitted species name
Enterococcus casseliflavus

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_016727345.1GCA_016727345.1
Organism nameEnterococcus casseliflavusEnterococcus casseliflavus
Type categorytypetype
ANI98.41%98.41%
Assembly coverage89.07%89.07%
Type assembly coverage83.77%83.77%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP053180.1NZ_CP053180.13,337,345430

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_023523715.1GCF_023523715.1ASM2352371v1Complete GenomeMay 23, 2022