U.S. flag

An official website of the United States government

estd208 (Helbig et al. 2013)

Organism:
Human
Study Type:
Case-Set
Submitter:
Bobby Koeleman
Description:
Genetics and particularly Copy Number Variations (CNVs) have emerged as significant genetic risk factors for epilepsy. This study aimed to clarify the relevance of CNVs in patients with unclassified epilepsies and complex phenotypes. In total 222 patients from three European countries, including patients with structural lesions on magnetic resonance imaging (MRI), dysmorphic features, and multiple congenital anomalies (MCA), were clinically evaluated and screened for CNVs. Array CGH uncovered 88 rare CNV). We conclude that Genome-wide screening methods for rare CNVs may provide clues for the genetic etiology in patients with a broad range of epilepsies. See Variant Summary counts for estd208 in dbVar Variant Summary.
Publication(s):
Helbig et al. 2013

Detailed Information: Download 81 Variant Regions, Download 88 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted; Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr144RemappedNC_000001.11
NC_000002.12Chr277RemappedNC_000002.12
NC_000003.12Chr344RemappedNC_000003.12
NC_000004.12Chr477RemappedNC_000004.12
NC_000005.10Chr566RemappedNC_000005.10
NC_000006.12Chr622RemappedNC_000006.12
NC_000007.14Chr722RemappedNC_000007.14
NC_000008.11Chr822RemappedNC_000008.11
NC_000009.12Chr922RemappedNC_000009.12
NC_000011.10Chr1123RemappedNC_000011.10
NC_000012.12Chr1222RemappedNC_000012.12
NC_000013.11Chr1311RemappedNC_000013.11
NC_000014.9Chr1444RemappedNC_000014.9
NC_000015.10Chr1534RemappedNC_000015.10
NC_000016.10Chr1669RemappedNC_000016.10
NC_000017.11Chr1733RemappedNC_000017.11
NC_000018.10Chr1811RemappedNC_000018.10
NC_000019.10Chr1923RemappedNC_000019.10
NC_000020.11Chr2033RemappedNC_000020.11
NC_000021.9Chr2111RemappedNC_000021.9
NC_000022.11Chr2223RemappedNC_000022.11
NC_000023.11ChrX1414RemappedNC_000023.11
NC_000024.10ChrY11RemappedNC_000024.10
NW_003315905.1Chr1|NW_003315905.111RemappedNW_003315905.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NT_187660.1Chr15|NT_187660.122RemappedNT_187660.1
NW_011332701.1Chr15|NW_011332701.122RemappedNW_011332701.1
NT_187607.1Chr16|NT_187607.102RemappedNT_187607.1
NW_017852933.1Chr16|NW_017852933.111RemappedNW_017852933.1
NT_187667.1ChrX|NT_187667.111RemappedNT_187667.1
NT_187634.1ChrX|NT_187634.111RemappedNT_187634.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000002.11Chr211SubmittedNC_000002.11
NC_000003.11Chr311SubmittedNC_000003.11
NC_000004.11Chr411SubmittedNC_000004.11
NC_000012.11Chr1211SubmittedNC_000012.11
NC_000001.10Chr144RemappedNC_000001.10
NC_000002.11Chr266RemappedNC_000002.11
NC_000003.11Chr333RemappedNC_000003.11
NC_000004.11Chr466RemappedNC_000004.11
NC_000005.9Chr566RemappedNC_000005.9
NC_000006.11Chr622RemappedNC_000006.11
NC_000007.13Chr722RemappedNC_000007.13
NC_000008.10Chr822RemappedNC_000008.10
NC_000009.11Chr922RemappedNC_000009.11
NC_000011.9Chr1123RemappedNC_000011.9
NC_000012.11Chr1211RemappedNC_000012.11
NC_000013.10Chr1311RemappedNC_000013.10
NC_000014.8Chr1444RemappedNC_000014.8
NC_000015.9Chr1534RemappedNC_000015.9
NC_000016.9Chr1669RemappedNC_000016.9
NC_000017.10Chr1733RemappedNC_000017.10
NC_000018.9Chr1811RemappedNC_000018.9
NC_000019.9Chr1923RemappedNC_000019.9
NC_000020.10Chr2033RemappedNC_000020.10
NC_000021.8Chr2111RemappedNC_000021.8
NC_000022.10Chr2223RemappedNC_000022.10
NC_000023.10ChrX1414RemappedNC_000023.10
NC_000024.9ChrY11RemappedNC_000024.9
NW_003315905.1Chr1|NW_003315905.111RemappedNW_003315905.1
NW_003871055.3Chr1|NW_003871055.311RemappedNW_003871055.3
NW_004775427.1Chr4|NW_004775427.111RemappedNW_004775427.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NW_003871100.1ChrX|NW_003871100.111RemappedNW_003871100.1
NW_003871103.3ChrX|NW_003871103.322RemappedNW_003871103.3
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.9Chr144SubmittedNC_000001.9
NC_000002.10Chr266SubmittedNC_000002.10
NC_000003.10Chr333SubmittedNC_000003.10
NC_000004.10Chr466SubmittedNC_000004.10
NC_000005.8Chr566SubmittedNC_000005.8
NC_000006.10Chr622SubmittedNC_000006.10
NC_000007.12Chr722SubmittedNC_000007.12
NC_000008.9Chr822SubmittedNC_000008.9
NC_000009.10Chr922SubmittedNC_000009.10
NC_000011.8Chr1123SubmittedNC_000011.8
NC_000012.10Chr1211SubmittedNC_000012.10
NC_000013.9Chr1311SubmittedNC_000013.9
NC_000014.7Chr1444SubmittedNC_000014.7
NC_000015.8Chr1534SubmittedNC_000015.8
NC_000016.8Chr1669SubmittedNC_000016.8
NC_000017.9Chr1733SubmittedNC_000017.9
NC_000018.8Chr1811SubmittedNC_000018.8
NC_000019.8Chr1923SubmittedNC_000019.8
NC_000020.9Chr2033SubmittedNC_000020.9
NC_000021.7Chr2111SubmittedNC_000021.7
NC_000022.9Chr2223SubmittedNC_000022.9
NC_000023.9ChrX1414SubmittedNC_000023.9
NC_000024.8ChrY11SubmittedNC_000024.8

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000002.11Chr2110000110000
NC_000003.11Chr3110000110000
NC_000004.11Chr4110000110000
NC_000012.11Chr12110000110000
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.9Chr1420002420002
NC_000002.10Chr2660000660000
NC_000003.10Chr3321000321000
NC_000004.10Chr4650001650001
NC_000005.8Chr5651000651000
NC_000006.10Chr6211000211000
NC_000007.12Chr7220000220000
NC_000008.9Chr8220000220000
NC_000009.10Chr9210100210100
NC_000011.8Chr11210001320001
NC_000012.10Chr12110000110000
NC_000013.9Chr13110000110000
NC_000014.7Chr14440000440000
NC_000015.8Chr15311100412100
NC_000016.8Chr16660000990000
NC_000017.9Chr17321000321000
NC_000018.8Chr18110000110000
NC_000019.8Chr19220000330000
NC_000020.9Chr20330000330000
NC_000021.7Chr21110000110000
NC_000022.9Chr22211000312000
NC_000023.9ChrX14830031483003
NC_000024.8ChrY110000110000
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.9Chr1421001421001
NC_000002.10Chr2642000642000
NC_000003.10Chr3312000312000
NC_000004.10Chr4651000651000
NC_000005.8Chr5651000651000
NC_000006.10Chr6211000211000
NC_000007.12Chr7220000220000
NC_000008.9Chr8220000220000
NC_000009.10Chr9210100210100
NC_000011.8Chr11210001320001
NC_000012.10Chr12110000110000
NC_000013.9Chr13110000110000
NC_000014.7Chr14431000431000
NC_000015.8Chr15301002402002
NC_000016.8Chr16650001960003
NC_000017.9Chr17321000321000
NC_000018.8Chr18110000110000
NC_000019.8Chr19220000330000
NC_000020.9Chr20330000330000
NC_000021.7Chr21110000110000
NC_000022.9Chr22210100310200
NC_000023.9ChrX14823011482301
NC_000024.8ChrY110000110000

Samplesets

Number of Samplesets: 1

Description:
European cohort of epilepsy patients
Size:
71
Organisms:
Homo sapiens
Sampleset Phenotype(s):
Epilepsy
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDCell TypeSubject ID SexSubject Phenotype
    NL22Whole bloodNL22MaleEpilepsy
    NL29Whole bloodNL29MaleEpilepsy
    NL23Whole bloodNL23FemaleEpilepsy
    NL72Whole bloodNL72MaleEpilepsy
    NL47Whole bloodNL47MaleEpilepsy
    NL45Whole bloodNL45MaleEpilepsy
    NL24Whole bloodNL24FemaleEpilepsy
    NL28Whole bloodNL28MaleEpilepsy
    K31Whole bloodK31FemaleEpilepsy
    NL46Whole bloodNL46FemaleEpilepsy
    NL49Whole bloodNL49FemaleEpilepsy
    NL38Whole bloodNL38MaleEpilepsy
    NL15Whole bloodNL15FemaleEpilepsy
    NL51Whole bloodNL51MaleEpilepsy
    NL11Whole bloodNL11MaleEpilepsy
    NL25Whole bloodNL25MaleEpilepsy
    NL54Whole bloodNL54MaleEpilepsy
    NL16Whole bloodNL16MaleEpilepsy
    NL10Whole bloodNL10FemaleEpilepsy
    NL67Whole bloodNL67MaleEpilepsy
    NL6Whole bloodNL6MaleEpilepsy
    NL60Whole bloodNL60MaleEpilepsy
    NL31Whole bloodNL31FemaleEpilepsy
    K12Whole bloodK12MaleEpilepsy
    NL59Whole bloodNL59MaleEpilepsy
    NL17Whole bloodNL17MaleEpilepsy
    NL70Whole bloodNL70MaleEpilepsy
    NL66Whole bloodNL66MaleEpilepsy
    NL53Whole bloodNL53FemaleEpilepsy
    NL52Whole bloodNL52FemaleEpilepsy
    D10Whole bloodD10MaleEpilepsy
    NL4Whole bloodNL4MaleEpilepsy
    NL9Whole bloodNL9MaleEpilepsy
    NL32Whole bloodNL32MaleEpilepsy
    NL37Whole bloodNL37MaleEpilepsy
    D16Whole bloodD16MaleEpilepsy
    D5Whole bloodD5MaleEpilepsy
    K29Whole bloodK29MaleEpilepsy
    NL40Whole bloodNL40MaleEpilepsy
    NL36Whole bloodNL36FemaleEpilepsy
    NL18Whole bloodNL18MaleEpilepsy
    NL2Whole bloodNL2FemaleEpilepsy
    NL33Whole bloodNL33MaleEpilepsy
    NL21Whole bloodNL21MaleEpilepsy
    NL62Whole bloodNL62MaleEpilepsy
    NL44Whole bloodNL44FemaleEpilepsy
    NL5Whole bloodNL5FemaleEpilepsy
    NL13Whole bloodNL13FemaleEpilepsy
    K1Whole bloodK1FemaleEpilepsy
    NL41Whole bloodNL41MaleEpilepsy
    NL64Whole bloodNL64MaleEpilepsy
    NL20Whole bloodNL20FemaleEpilepsy
    D34Whole bloodD34FemaleEpilepsy
    NL3Whole bloodNL3FemaleEpilepsy
    NL19Whole bloodNL19FemaleEpilepsy
    D39Whole bloodD39MaleEpilepsy
    NL68Whole bloodNL68FemaleEpilepsy
    K22Whole bloodK22MaleEpilepsy
    NL42Whole bloodNL42FemaleEpilepsy
    NL1Whole bloodNL1MaleEpilepsy
    NL35Whole bloodNL35MaleEpilepsy
    NL39Whole bloodNL39MaleEpilepsy
    NL7Whole bloodNL7MaleEpilepsy
    NL58Whole bloodNL58MaleEpilepsy
    NL74Whole bloodNL74MaleEpilepsy
    K13Whole bloodK13MaleEpilepsy
    NL43Whole bloodNL43FemaleEpilepsy
    NL63Whole bloodNL63FemaleEpilepsy
    NL27Whole bloodNL27FemaleEpilepsy
    NL14Whole bloodNL14FemaleEpilepsy
    NL26Whole bloodNL26MaleEpilepsy

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
    1DiscoveryOligo aCGHProbe signal intensityAgilent 105K/180K70
    2DiscoverySNP arraySNP genotyping analysisAffymetrix 6.06
    3DiscoverySNP arraySNP genotyping analysisAffymetrix 6.08
    4DiscoverySNP arraySNP genotyping analysisAffymetrix 6.04

    Validations

    No validation data were submitted for this study.

    Support Center