estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Holly Bradley
- Submitter URL:
- http://www.1000genomes.org/
- Description:
- 1000 Genomes Phase 3 structural variants as reported in a companion paper specifically dedicated to SV analysis. Much of these data are identical to those reported in the main paper as study estd214. See Variant Summary counts for estd219 in dbVar Variant Summary.
- Publication(s):
- 1000 Genomes Consortium Phase 3 Integrated SV
Detailed Information: Download 68825 Variant Regions, Download 8812557 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 4,656 | 576,068 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 5,641 | 633,458 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,812 | 542,664 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 4,780 | 633,463 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 4,428 | 556,886 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 4,186 | 615,054 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 4,197 | 462,204 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 3,672 | 451,569 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 3,000 | 376,560 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 3,126 | 396,365 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 3,374 | 426,755 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 3,297 | 390,237 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 2,484 | 344,733 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 2,097 | 249,144 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 1,867 | 258,718 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 2,062 | 228,256 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,920 | 211,418 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 2,006 | 248,200 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 1,611 | 145,141 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,569 | 171,177 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 877 | 117,362 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 843 | 100,041 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 2,259 | 627,952 | Remapped | NC_000023.11 |
| NT_187513.1 | Unplaced|NT_187513.1 | 2 | 26 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 4 | 476 | Remapped | NT_187361.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 7 | 121 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 10 | 744 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 6 | 1,008 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 14 | 1,643 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1,074 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 6 | 1,008 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 1 | 3 | Remapped | NW_003315905.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 12 | 132 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 4 | 266 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 4 | 237 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 5 | 208 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 6 | 736 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 9 | 3,695 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 4 | 1,261 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 5 | 931 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 5 | 98 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 4 | 559 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 15 | 1,480 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 4 | 117 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 5 | 4,765 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 9 | 363 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 3 | 336 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 17 | 1,291 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 52 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 5 | 6 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 12 | 421 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 4 | 4,112 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 7 | 1,239 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 3 | 13 | Remapped | NT_187530.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 2 | 3 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 17 | 1,291 | Remapped | NT_187647.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 4 | 1,331 | Remapped | NW_003315908.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 4 | 40 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 7 | 21 | Remapped | NW_011332690.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 11 | 16 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 6 | 82 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 7 | 1,776 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 5 | 8,290 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 5 | 8,290 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 5 | 8,290 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 5 | 8,290 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 5 | 8,290 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 4 | 6,340 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 3 | 5 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 4 | 5 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 5 | 33 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 10 | 399 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 10 | 691 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 4 | 87 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 8 | 875 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 5 | 8,290 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 10 | 42 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 4 | 84 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 9 | 16 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 9 | 1,723 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 7 | 83 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 7 | 210 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 2 | 6 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 8 | 90 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 5 | 565 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 3 | 302 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 3 | 7 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 2 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 19 | 7,162 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 3 | 254 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 10 | 629 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 2 | 109 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 5 | 165 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 9 | 2,277 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 3 | 3 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 10 | 378 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 9 | 2,277 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 11 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 11 | 3,898 | Remapped | NW_003315915.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 4 | 2,015 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 7 | 47 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 4 | 41 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 6 | 2,367 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 2 | 3 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 6 | 2,429 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 4 | 14 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 11 | 1,735 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 2 | 19 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 2 | 701 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 6 | 2,367 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 10 | 2,484 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 1 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 4 | 34 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 6 | 8 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 5 | 1,300 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 10 | 2,995 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 16 | 145 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 2 | 8 | Remapped | NW_018654712.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 4 | 1,506 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 9 | 427 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 4 | 2,113 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 20 | 245 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 2 | 6 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 3 | 225 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 4 | 100 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 13 | 5,706 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 7 | 27 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 43 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 2 | 2 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 9 | 229 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 15 | 2,495 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 6 | 438 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 4 | 6 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 6 | 1,070 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 14 | 1,808 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 4 | 13 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 6 | 1,362 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 15 | 2,495 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 15 | Remapped | NW_003315922.2 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 6 | 58 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 4 | 27 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 11 | 171 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 7 | 120 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 5 | 34 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 11 | 40 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 10 | 411 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 12 | 493 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 3 | 82 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 9 | 2,202 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 18 | 2,909 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 9 | 56 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 2 | 4,341 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 4 | 767 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 4 | 7 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 6 | 78 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 3 | 4 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 2 | 6 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 42 | 9,485 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 19 | 950 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 10 | 422 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 7 | 87 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 4 | 198 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 4 | 4 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 3 | 1,675 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 175 | 23,158 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 4 | 31 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 9 | 92 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 3 | 737 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 58 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 5 | 53 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 4 | 332 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 2 | 85 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 4 | 570 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 2 | 5 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 8 | 928 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 7 | 178 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 5 | 75 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 9 | 2,395 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 6 | 83 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 10 | 123 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 4 | 18 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 2 | 16 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 15 | 1,998 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 7 | 690 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 2 | 768 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 5 | 386 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 7 | 335 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 6 | 26 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 4 | 26 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 6 | 56 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 8 | 82 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 7 | 690 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 4 | 48 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 7 | 343 | Remapped | NW_015148966.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 3 | 3 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 13 | 2,157 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 6 | 1,095 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 17 | 1,856 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 3 | 10 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 21 | 3,728 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 8 | 1,358 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 3 | 15 | Remapped | NT_187588.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 2 | 198 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 4 | 21 | Remapped | NT_187591.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 3 | 331 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 4 | 1,662 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 8 | 2,385 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 5 | 1,020 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 39 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 9 | 3,206 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 15 | 4,213 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 7 | 92 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 22 | 2,452 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 54 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 6 | 143 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 28 | 3,987 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 2 | 244 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 3 | 4,311 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 7 | 2,744 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 4 | 1,019 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 2 | 2 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 11 | 3,475 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 5 | 2,845 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 1 | 3 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 3 | 3 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 10 | 2,375 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 2,166 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 3 | 3,209 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 3 | 50 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 2,557 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 5 | 2,811 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 3 | 11 | Remapped | NT_187599.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 34 | 3,466 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 24 | 3,478 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 6 | 2,019 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 77 | 9,200 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 10 | 228 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 8 | 374 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 2 | 15 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 2,660 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 5 | 289 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 81 | 9,442 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 48 | 1,200 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 2 | 2 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 2 | 8 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 6 | 108 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 4 | 192 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 2 | 3 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 9 | 161 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 2 | 5 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 7 | 11 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 22 | 1,075 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 2 | 2 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 13 | 293 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 5 | 1,064 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 11 | 4,280 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 20 | 4,427 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 10 | 1,270 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 3 | 2,179 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 1 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 9 | 1,694 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 8 | 1,926 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 20 | 1,306 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 80 | 12,861 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 5 | 60 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 9 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 14 | 2,014 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 3 | 222 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 7 | 1,666 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 24 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 18 | 583 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 2 | 318 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 3 | 364 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 14 | 2,417 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 6 | 179 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 6 | 2,564 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 9 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 11 | 80 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 5 | 157 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 5 | 23 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 1 | 1 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 9 | 504 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 3 | 32 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 11 | 80 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 6 | 1,819 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 4 | 86 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 5 | 157 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 8 | 2,771 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 8 | 85 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 427 | Remapped | NW_018654724.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 2 | 2 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 9 | 1,129 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 47 | 10,904 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 33 | 3,040 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 15 | 1,127 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 15 | 1,127 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 15 | 1,127 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 28 | 3,296 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 15 | 1,127 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 29 | 2,243 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 6 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 12 | 836 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 91 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 2 | 9 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 16 | 1,103 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 3 | 103 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 6 | 510 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 6 | 159 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 29 | 3,993 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 8 | 725 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 8 | 92 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 3 | 82 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 9 | 13 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 2 | 1,549 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 4 | 630 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 2 | 172 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 439 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 5 | 1,469 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 5 | 1,334 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 2 | 2 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 3 | 6 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 741 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 2 | 2 | Remapped | NW_015148969.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 3 | 178 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 3 | 28 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 4 | 52 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 8 | 7,162 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1,035 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 25 | 3,777 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 3 | 195 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 25 | 3,777 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 6 | 1,930 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 1 | 30 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 4,670 | 584,176 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 5,643 | 633,555 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,812 | 542,664 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 4,780 | 633,463 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 4,428 | 556,886 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 4,187 | 615,060 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 4,200 | 466,801 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 3,681 | 458,768 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 3,001 | 377,681 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 3,126 | 396,365 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 3,377 | 429,350 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 3,299 | 391,943 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 2,484 | 344,733 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 2,097 | 249,144 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 1,867 | 258,718 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 2,062 | 228,256 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 1,926 | 215,183 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 2,006 | 248,200 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 1,621 | 152,729 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,569 | 171,177 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 877 | 117,362 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 848 | 107,771 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 2,264 | 632,572 | Submitted | NC_000023.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 4,670 | 4,450 | 80 | 5 | 5 | 130 | 584,176 | 518,011 | 39,231 | 141 | 7,352 | 19,441 |
| NC_000002.11 | Chr2 | 5,643 | 5,518 | 25 | 2 | 2 | 96 | 633,555 | 621,492 | 1,028 | 168 | 97 | 10,770 |
| NC_000003.11 | Chr3 | 4,812 | 4,659 | 35 | 1 | 0 | 117 | 542,664 | 526,865 | 80 | 2,204 | 0 | 13,515 |
| NC_000004.11 | Chr4 | 4,780 | 4,687 | 16 | 1 | 0 | 76 | 633,463 | 616,643 | 2,351 | 11 | 0 | 14,458 |
| NC_000005.9 | Chr5 | 4,428 | 4,327 | 15 | 0 | 0 | 86 | 556,886 | 543,152 | 191 | 0 | 0 | 13,543 |
| NC_000006.11 | Chr6 | 4,187 | 4,077 | 24 | 5 | 1 | 80 | 615,060 | 604,352 | 51 | 21 | 6 | 10,630 |
| NC_000007.13 | Chr7 | 4,200 | 4,027 | 68 | 2 | 3 | 100 | 466,801 | 449,514 | 4,853 | 180 | 4,597 | 7,657 |
| NC_000008.10 | Chr8 | 3,681 | 3,328 | 20 | 2 | 1 | 330 | 458,768 | 420,964 | 53 | 3 | 3 | 37,745 |
| NC_000009.11 | Chr9 | 3,001 | 2,966 | 6 | 2 | 2 | 25 | 377,681 | 367,997 | 5,441 | 989 | 1,897 | 1,357 |
| NC_000010.10 | Chr10 | 3,126 | 3,063 | 18 | 4 | 0 | 41 | 396,365 | 372,062 | 14,640 | 5,429 | 0 | 4,234 |
| NC_000011.9 | Chr11 | 3,377 | 3,225 | 29 | 0 | 3 | 120 | 429,350 | 416,649 | 192 | 0 | 2,595 | 9,914 |
| NC_000012.11 | Chr12 | 3,299 | 3,140 | 10 | 2 | 1 | 146 | 391,943 | 360,313 | 361 | 780 | 930 | 29,559 |
| NC_000013.10 | Chr13 | 2,484 | 2,430 | 5 | 5 | 0 | 44 | 344,733 | 329,174 | 16 | 5 | 0 | 15,538 |
| NC_000014.8 | Chr14 | 2,097 | 2,016 | 12 | 2 | 0 | 67 | 249,144 | 237,985 | 1,390 | 2 | 0 | 9,767 |
| NC_000015.9 | Chr15 | 1,867 | 1,752 | 6 | 2 | 0 | 107 | 258,718 | 242,868 | 3,631 | 8 | 0 | 12,211 |
| NC_000016.9 | Chr16 | 2,062 | 1,937 | 6 | 0 | 0 | 119 | 228,256 | 225,180 | 16 | 0 | 0 | 3,060 |
| NC_000017.10 | Chr17 | 1,926 | 1,690 | 20 | 0 | 0 | 216 | 215,183 | 181,696 | 122 | 0 | 0 | 33,365 |
| NC_000018.9 | Chr18 | 2,006 | 1,914 | 19 | 1 | 0 | 72 | 248,200 | 240,847 | 235 | 2 | 0 | 7,116 |
| NC_000019.9 | Chr19 | 1,621 | 1,502 | 18 | 0 | 0 | 101 | 152,729 | 144,736 | 153 | 0 | 0 | 7,840 |
| NC_000020.10 | Chr20 | 1,569 | 1,538 | 13 | 0 | 0 | 18 | 171,177 | 168,694 | 209 | 0 | 0 | 2,274 |
| NC_000021.8 | Chr21 | 877 | 820 | 36 | 0 | 0 | 21 | 117,362 | 111,706 | 68 | 0 | 0 | 5,588 |
| NC_000022.10 | Chr22 | 848 | 797 | 28 | 0 | 3 | 20 | 107,771 | 94,559 | 1,564 | 0 | 5,090 | 6,558 |
| NC_000023.10 | ChrX | 2,264 | 2,115 | 104 | 6 | 5 | 34 | 632,572 | 611,174 | 7,868 | 3,008 | 4,620 | 5,902 |
Samplesets
Number of Samplesets: 1
- Size:
- 1,092
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| HG00126 | HG00126 | Male | GBR | Not reported |
| HG00100 | HG00100 | Female | GBR | Not reported |
| HG00244 | HG00244 | Male | GBR | Not reported |
| HG00114 | HG00114 | Male | GBR | Not reported |
| HG00173 | HG00173 | Female | FIN | Not reported |
| HG00234 | HG00234 | Male | GBR | Not reported |
| HG00150 | HG00150 | Female | GBR | Not reported |
| HG00256 | HG00256 | Male | GBR | Not reported |
| HG00179 | HG00179 | Female | FIN | Not reported |
| HG00255 | HG00255 | Female | GBR | Not reported |
| HG00115 | HG00115 | Male | GBR | Not reported |
| HG00236 | HG00236 | Female | GBR | Not reported |
| HG00096 | HG00096 | Male | GBR | Not reported |
| HG00148 | HG00148 | Male | GBR | Not reported |
| HG00235 | HG00235 | Female | GBR | Not reported |
| HG00257 | HG00257 | Female | GBR | Not reported |
| HG00113 | HG00113 | Male | GBR | Not reported |
| HG00188 | HG00188 | Male | FIN | Not reported |
| HG00185 | HG00185 | Male | FIN | Not reported |
| HG00262 | HG00262 | Female | GBR | Not reported |
| HG00157 | HG00157 | Male | GBR | Not reported |
| HG00133 | HG00133 | Female | GBR | Not reported |
| HG00099 | HG00099 | Female | GBR | Not reported |
| HG00259 | HG00259 | Female | GBR | Not reported |
| HG00177 | HG00177 | Female | FIN | Not reported |
| HG00231 | HG00231 | Female | GBR | Not reported |
| HG00158 | HG00158 | Female | GBR | Not reported |
| HG00130 | HG00130 | Female | GBR | Not reported |
| HG00127 | HG00127 | Female | GBR | Not reported |
| HG00101 | HG00101 | Male | GBR | Not reported |
| HG00176 | HG00176 | Female | FIN | Not reported |
| HG00112 | HG00112 | Male | GBR | Not reported |
| HG00258 | HG00258 | Female | GBR | Not reported |
| HG00186 | HG00186 | Male | FIN | Not reported |
| HG00097 | HG00097 | Female | GBR | Not reported |
| HG00181 | HG00181 | Male | FIN | Not reported |
| HG00121 | HG00121 | Female | GBR | Not reported |
| HG00253 | HG00253 | Female | GBR | Not reported |
| HG00142 | HG00142 | Male | GBR | Not reported |
| HG00254 | HG00254 | Female | GBR | Not reported |
| HG00105 | HG00105 | Male | GBR | Not reported |
| HG00250 | HG00250 | Female | GBR | Not reported |
| HG00120 | HG00120 | Female | GBR | Not reported |
| HG00138 | HG00138 | Male | GBR | Not reported |
| HG00103 | HG00103 | Male | GBR | Not reported |
| HG00141 | HG00141 | Male | GBR | Not reported |
| HG00240 | HG00240 | Female | GBR | Not reported |
| HG00143 | HG00143 | Male | GBR | Not reported |
| HG00187 | HG00187 | Male | FIN | Not reported |
| HG00145 | HG00145 | Male | GBR | Not reported |
| HG00132 | HG00132 | Female | GBR | Not reported |
| HG00137 | HG00137 | Female | GBR | Not reported |
| HG00118 | HG00118 | Female | GBR | Not reported |
| HG00178 | HG00178 | Female | FIN | Not reported |
| HG00260 | HG00260 | Male | GBR | Not reported |
| HG00116 | HG00116 | Male | GBR | Not reported |
| HG00243 | HG00243 | Male | GBR | Not reported |
| HG00261 | HG00261 | Female | GBR | Not reported |
| HG00102 | HG00102 | Female | GBR | Not reported |
| HG00245 | HG00245 | Female | GBR | Not reported |
| HG00107 | HG00107 | Male | GBR | Not reported |
| HG00140 | HG00140 | Male | GBR | Not reported |
| HG00242 | HG00242 | Male | GBR | Not reported |
| HG00190 | HG00190 | Male | FIN | Not reported |
| HG00238 | HG00238 | Female | GBR | Not reported |
| HG00117 | HG00117 | Male | GBR | Not reported |
| HG00128 | HG00128 | Female | GBR | Not reported |
| HG00180 | HG00180 | Female | FIN | Not reported |
| HG00237 | HG00237 | Female | GBR | Not reported |
| HG00129 | HG00129 | Male | GBR | Not reported |
| HG00123 | HG00123 | Female | GBR | Not reported |
| HG00246 | HG00246 | Male | GBR | Not reported |
| HG00139 | HG00139 | Male | GBR | Not reported |
| HG00183 | HG00183 | Male | FIN | Not reported |
| HG00160 | HG00160 | Male | GBR | Not reported |
| HG00109 | HG00109 | Male | GBR | Not reported |
| HG00159 | HG00159 | Male | GBR | Not reported |
| HG00149 | HG00149 | Male | GBR | Not reported |
| HG00125 | HG00125 | Female | GBR | Not reported |
| HG00171 | HG00171 | Female | FIN | Not reported |
| HG00232 | HG00232 | Female | GBR | Not reported |
| HG00174 | HG00174 | Female | FIN | Not reported |
| HG00122 | HG00122 | Female | GBR | Not reported |
| HG00182 | HG00182 | Male | FIN | Not reported |
| HG00110 | HG00110 | Female | GBR | Not reported |
| HG00151 | HG00151 | Male | GBR | Not reported |
| HG00154 | HG00154 | Female | GBR | Not reported |
| HG00136 | HG00136 | Male | GBR | Not reported |
| HG00251 | HG00251 | Male | GBR | Not reported |
| HG00155 | HG00155 | Male | GBR | Not reported |
| HG00111 | HG00111 | Female | GBR | Not reported |
| HG00233 | HG00233 | Female | GBR | Not reported |
| HG00189 | HG00189 | Male | FIN | Not reported |
| HG00106 | HG00106 | Female | GBR | Not reported |
| HG00252 | HG00252 | Male | GBR | Not reported |
| HG00108 | HG00108 | Male | GBR | Not reported |
| HG00131 | HG00131 | Male | GBR | Not reported |
| HG00119 | HG00119 | Male | GBR | Not reported |
| HG00146 | HG00146 | Female | GBR | Not reported |
| HG00239 | HG00239 | Female | GBR | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Site | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Paired-end mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | Wellcome Trust Sanger Institute | PubMed, http://gmt.genome.wustl.edu/packages/breakdancer/ | 0 |
| 2 | Discovery | Sequencing | Read depth | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | Yale | PubMed, http://sv.gersteinlab.org/cnvnator/ | 0 |
| 3 | Discovery | Sequencing | Paired-end mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | European Molecular Biology Laboratory | PubMed, http://www.korbel.embl.de/software.html | 0 |
| 4 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | Broad Institute | PubMed, http://www.broadinstitute.org/software/genomestrip | 0 |
| 5 | Discovery | Sequencing | Split read mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | Leiden University Medical Centre | PubMed, http://gmt.genome.wustl.edu/packages/pindel/ | 0 |
| 6 | Discovery | Sequencing | Paired-end mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | University of Michigan | http://millslab.ccmb.med.umich.edu/index.html | 0 |
| 7 | Discovery | Sequencing | Read depth | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | University of Washington | https://github.com/psudmant/ssf_DTS_caller | 0 |
| 8 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina Genome Analyzer,Genome Analyzer II,Genome Analyzer IIx,HiSeq 2000 | University of Maryland | http://www.broadinstitute.org/software/genomestrip | 0 |
| 9 | Discovery | Merging of experiments 1,2,3,4,5,6,7,8 | Merging of experiments 1,2,3,4,5,6,7,8 | See merged experiments | 8,812,557 |