estd231 (Wong et al. 2017)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Laiping Wong
- Description:
- Deep whole genome sequencing on 48 individuals with Juvenile Idiopathic Arthritis. See Variant Summary counts for estd231 in dbVar Variant Summary.
- Publication(s):
- Wong et al. 2017
Detailed Information: Download 7063 Variant Regions, Download 7063 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 499 | 499 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 587 | 587 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 435 | 435 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 499 | 499 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 431 | 431 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 462 | 462 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 478 | 478 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 345 | 345 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 307 | 307 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 339 | 339 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 360 | 360 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 330 | 330 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 246 | 246 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 197 | 197 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 197 | 197 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 223 | 223 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 240 | 240 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 180 | 180 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 257 | 257 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 163 | 163 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 118 | 118 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 116 | 116 | Remapped | NC_000022.11 |
| NT_187515.1 | Chr1|NT_187515.1 | 3 | 3 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 1 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 1 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 2 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 1 | Remapped | NT_187646.1 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 3 | 3 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 1 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 1 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 1 | 1 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 2 | Remapped | NW_018654707.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 1 | 1 | Remapped | NW_019805487.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 1 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 3 | 3 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 3 | 3 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 2 | 2 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 1 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 2 | 2 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 6 | 6 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 1 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 2 | 2 | Remapped | NW_011332689.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 5 | 5 | Remapped | NW_012132915.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 2 | 2 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 2 | 2 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 4 | 4 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 2 | 2 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 2 | 2 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 3 | 3 | Remapped | NT_187532.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 2 | 2 | Remapped | NT_187535.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 1 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 2 | 2 | Remapped | NT_187649.1 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 2 | 2 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 2 | 2 | Remapped | NW_012132916.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 7 | 7 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 3 | 3 | Remapped | NT_113793.3 |
| NT_187543.1 | Chr4|NT_187543.1 | 5 | 5 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 3 | 3 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 5 | 5 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 2 | Remapped | NW_003315915.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 1 | Remapped | NW_013171800.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 3 | 3 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 1 | 1 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 2 | Remapped | NW_003315917.2 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 3 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 2 | 2 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 2 | 2 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 2 | 2 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 2 | 2 | Remapped | NT_187556.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 1 | Remapped | NW_004166862.2 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 4 | 4 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 1 | 1 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 10 | 10 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 1 | Remapped | NT_187563.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 3 | 3 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 2 | 2 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 2 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 3 | 3 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 2 | 2 | Remapped | NT_187569.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 1 | 1 | Remapped | NT_187571.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 14 | 14 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 2 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 2 | 2 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 2 | 2 | Remapped | NT_187655.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 1 | Remapped | NW_017852932.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 11 | 11 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 2 | 2 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 1 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 4 | 4 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 1 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 6 | 6 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 2 | Remapped | NW_003315934.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 2 | 2 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 5 | 5 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 1 | 1 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 2 | 2 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 3 | 3 | Remapped | NT_187584.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 1 | Remapped | NT_187586.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 1 | 1 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 5 | 5 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 3 | 3 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 5 | 5 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 3 | 3 | Remapped | NT_187587.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 1 | 1 | Remapped | NT_187591.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 3 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 3 | 3 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 2 | 2 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 2 | 2 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 3 | 3 | Remapped | NT_187592.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 3 | 3 | Remapped | NT_187594.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 1 | 1 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 2 | 2 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 1 | Remapped | NW_011332699.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 9 | 9 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 3 | 3 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 2 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 2 | 2 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 5 | 5 | Remapped | NT_187660.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 2 | 2 | Remapped | NT_187606.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 5 | 5 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 4 | 4 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 1 | Remapped | NT_187610.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 2 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 1 | 1 | Remapped | NW_019805500.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 6 | 6 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 4 | 4 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 2 | 2 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 3 | 3 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 2 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 1 | 1 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 3 | 3 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 8 | 8 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 9 | 9 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 1 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 5 | 5 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 2 | 2 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 1 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 2 | 2 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 1 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 1 | 1 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 1 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 2 | 2 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 1 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 11 | 11 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 9 | 9 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 6 | 6 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 6 | 6 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 6 | 6 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 9 | 9 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 6 | 6 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 7 | 7 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 3 | 3 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 3 | 3 | Remapped | NW_003315963.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 9 | 9 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 1 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 2 | 2 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 2 | 2 | Remapped | NT_187624.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 1 | 1 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 2 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 2 | 2 | Remapped | NT_187682.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 2 | 2 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 1 | 1 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 506 | 506 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 588 | 588 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 435 | 435 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 499 | 499 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 431 | 431 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 465 | 465 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 487 | 487 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 350 | 350 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 312 | 312 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 341 | 341 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 361 | 361 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 331 | 331 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 249 | 249 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 199 | 199 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 197 | 197 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 224 | 224 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 245 | 245 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 180 | 180 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 259 | 259 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 164 | 164 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 118 | 118 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 122 | 122 | Submitted | NC_000022.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 506 | 468 | 11 | 1 | 6 | 20 | 506 | 468 | 11 | 1 | 6 | 20 |
| NC_000002.11 | Chr2 | 588 | 549 | 9 | 4 | 0 | 26 | 588 | 549 | 9 | 4 | 0 | 26 |
| NC_000003.11 | Chr3 | 435 | 418 | 4 | 0 | 0 | 13 | 435 | 418 | 4 | 0 | 0 | 13 |
| NC_000004.11 | Chr4 | 499 | 479 | 5 | 1 | 0 | 14 | 499 | 479 | 5 | 1 | 0 | 14 |
| NC_000005.9 | Chr5 | 431 | 417 | 2 | 0 | 0 | 12 | 431 | 417 | 2 | 0 | 0 | 12 |
| NC_000006.11 | Chr6 | 465 | 450 | 1 | 1 | 3 | 10 | 465 | 450 | 1 | 1 | 3 | 10 |
| NC_000007.13 | Chr7 | 487 | 454 | 13 | 7 | 2 | 11 | 487 | 454 | 13 | 7 | 2 | 11 |
| NC_000008.10 | Chr8 | 350 | 307 | 0 | 4 | 0 | 39 | 350 | 307 | 0 | 4 | 0 | 39 |
| NC_000009.11 | Chr9 | 312 | 294 | 0 | 5 | 3 | 10 | 312 | 294 | 0 | 5 | 3 | 10 |
| NC_000010.10 | Chr10 | 341 | 323 | 6 | 0 | 2 | 10 | 341 | 323 | 6 | 0 | 2 | 10 |
| NC_000011.9 | Chr11 | 361 | 339 | 2 | 2 | 1 | 17 | 361 | 339 | 2 | 2 | 1 | 17 |
| NC_000012.11 | Chr12 | 331 | 306 | 0 | 1 | 1 | 23 | 331 | 306 | 0 | 1 | 1 | 23 |
| NC_000013.10 | Chr13 | 249 | 242 | 0 | 0 | 0 | 7 | 249 | 242 | 0 | 0 | 0 | 7 |
| NC_000014.8 | Chr14 | 199 | 178 | 3 | 1 | 2 | 15 | 199 | 178 | 3 | 1 | 2 | 15 |
| NC_000015.9 | Chr15 | 197 | 184 | 2 | 2 | 0 | 9 | 197 | 184 | 2 | 2 | 0 | 9 |
| NC_000016.9 | Chr16 | 224 | 209 | 1 | 4 | 1 | 9 | 224 | 209 | 1 | 4 | 1 | 9 |
| NC_000017.10 | Chr17 | 245 | 198 | 2 | 2 | 3 | 40 | 245 | 198 | 2 | 2 | 3 | 40 |
| NC_000018.9 | Chr18 | 180 | 171 | 1 | 1 | 0 | 7 | 180 | 171 | 1 | 1 | 0 | 7 |
| NC_000019.9 | Chr19 | 259 | 230 | 11 | 0 | 0 | 18 | 259 | 230 | 11 | 0 | 0 | 18 |
| NC_000020.10 | Chr20 | 164 | 157 | 2 | 0 | 1 | 4 | 164 | 157 | 2 | 0 | 1 | 4 |
| NC_000021.8 | Chr21 | 118 | 108 | 3 | 1 | 0 | 6 | 118 | 108 | 3 | 1 | 0 | 6 |
| NC_000022.10 | Chr22 | 122 | 105 | 3 | 2 | 4 | 8 | 122 | 105 | 3 | 2 | 4 | 8 |
Samplesets
Number of Samplesets: 1
- Size:
- 48
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Juvenile idiopathic arthritis
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Split read and paired-end mapping | Illumina HiSeq X Ten | 7,063 |