nstd100 (Coe et al. 2014)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Evan Eichler
- Description:
- Copy Number Variants from 29,083 cases of Developmental Delay and Intellectual Disability from Signature Genomics, and 11,256 Control Samples. This study contains samples in common with Cooper et al. 2011. Due to analysis differences (see manuscripts) please use the case samples (Sampleset 1) from only one of these submissions. Control sample sets do not overlap and may be combined. See Variant Summary counts for nstd100 in dbVar Variant Summary.
- Publication(s):
- Coe et al. 2014
Detailed Information: Download 70319 Variant Regions, Download 318775 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 5,779 | 41,031 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 4,823 | 17,730 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,373 | 25,048 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 4,178 | 29,530 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 3,051 | 11,048 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 3,463 | 18,791 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 4,381 | 14,162 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 4,870 | 21,399 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 3,114 | 10,074 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 3,081 | 7,604 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 2,766 | 9,978 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 2,413 | 12,198 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,494 | 5,149 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 3,325 | 11,535 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 4,730 | 17,190 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 3,645 | 13,158 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 2,595 | 13,098 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 1,236 | 2,228 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 2,122 | 8,271 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,312 | 8,146 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 924 | 2,783 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 1,603 | 6,048 | Remapped | NC_000022.11 |
| NT_187367.1 | Chr1|NT_187367.1 | 8 | 13 | Remapped | NT_187367.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 2 | 2 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 3 | 3 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 8 | 8 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 2 | 2 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 11 | 17 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 17 | 17 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 3 | 4 | Remapped | NT_187520.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 10 | 11 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 4 | 7 | Remapped | NW_003315905.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 2 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 6 | 6 | Remapped | NW_003315907.2 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 6 | 17 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 17 | 37 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 23 | 182 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 1 | Remapped | NW_014040925.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 15 | 16 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 10 | 10 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 145 | 5,938 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 6 | 9 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 2 | 2 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 111 | 936 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 7 | 12 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 12 | 14 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 9 | 12 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 2 | 2 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 13 | 22 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 3 | 3 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 111 | 936 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 18 | 38 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 2 | Remapped | NW_003315908.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 4 | 7 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 1 | 1 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 238 | 356 | Remapped | NW_012132915.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 1 | 1 | Remapped | NW_018654709.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 98 | 2,115 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 97 | 2,101 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 100 | 2,117 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 98 | 2,115 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 99 | 2,116 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 100 | 2,117 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 14 | 15 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 1 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 2 | 2 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 12 | 18 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 5 | 5 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 13 | 16 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 97 | 2,101 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 1 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 19 | 27 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 15 | 21 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 1 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 1 | 1 | Remapped | NW_012132916.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 2 | 2 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 31 | 291 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 1 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 4 | 4 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 1 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 38 | 62 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 17 | 52 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 6 | 10 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 1 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 15 | 26 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 10 | 11 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 15 | 26 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 4 | 6 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 195 | 4,997 | Remapped | NW_003315915.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 1 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 5 | 9 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 3 | 4 | Remapped | NW_017363814.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 4 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 15 | 21 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 2 | 2 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 19 | 248 | Remapped | NT_187651.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 13 | 40 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 15 | 19 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 4 | 4 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 5 | 5 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 20 | 35 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 5 | 5 | Remapped | NW_018654712.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 65 | 441 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 26 | 28 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 63 | 195 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 22 | 26 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 10 | 14 | Remapped | NT_167244.2 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 1 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 13 | 18 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 2 | 2 | Remapped | NT_187554.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 4 | 4 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 1 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 8 | 8 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 13 | 42 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 7 | 15 | Remapped | NW_012132918.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 14 | 35 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 60 | 128 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 9 | 11 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 47 | 62 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 375 | 10,832 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 3 | 4 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 60 | 128 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 8 | 11 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 213 | 937 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 54 | 666 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 18 | 41 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 16 | 24 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 16 | 17 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 3 | 3 | Remapped | NT_187566.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 6 | 6 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 279 | 1,559 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 12 | 29 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 4 | 4 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 7 | 7 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 192 | 719 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 7 | 8 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 27 | 36 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 5 | 5 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 4 | 4 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 643 | 2,593 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 1 | 1 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 2 | 2 | Remapped | NT_187578.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 1 | 1 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 4 | 14 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 1 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 3 | 3 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 13 | 18 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 15 | 78 | Remapped | NW_003315934.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 3 | 3 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 48 | 176 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 7 | 9 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 4 | 5 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 4 | 5 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 3 | 3 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 31 | 35 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 5 | 5 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 2 | 2 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 3 | 3 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 3 | 3 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 11 | 35 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 5 | 5 | Remapped | NW_011332695.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 23 | 86 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 6 | 6 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 1 | 1 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 57 | 2,105 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 126 | 964 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 2 | 2 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 4 | 6 | Remapped | NT_187589.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 2 | 2 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 1 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 3 | 6 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 2 | 2 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 40 | 78 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 11 | 16 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 11 | 24 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 18 | 30 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 58 | 886 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 2 | 2 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 3 | 17 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 5 | 6 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 2 | 5 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 9 | 9 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 2 | 2 | Remapped | NT_187595.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 13 | 23 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 49 | 152 | Remapped | NW_011332699.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 2 | 2 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 6 | 8 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 837 | 4,168 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 24 | 29 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 3 | 3 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 70 | 373 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 1 | 1 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 235 | 664 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 59 | 73 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 78 | 97 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 20 | 323 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 18 | 30 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 10 | 15 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 3 | 4 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 1 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 3 | 3 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 266 | 807 | Remapped | NW_011332701.1 |
| NW_012132920.1 | Chr15|NW_012132920.1 | 11 | 18 | Remapped | NW_012132920.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 15 | 19 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 129 | 392 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 1 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 1 | 1 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 3 | 3 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 2 | 3 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 18 | 18 | Remapped | NW_012132921.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 75 | 321 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 3 | 3 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 104 | 1,810 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 5 | 5 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 409 | 1,087 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 9 | 15 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 55 | 603 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 77 | 235 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 7 | 12 | Remapped | NT_187384.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 3 | 4 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 33 | 37 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 26 | 32 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 164 | 1,351 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 2 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 22 | 23 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 16 | 190 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 18 | 48 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 1 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 19 | 20 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 8 | 12 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 20 | 65 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 2 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 9 | 18 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 1 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 7 | 7 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 3 | 3 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 9 | 18 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 4 | 12 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 3 | 4 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 3 | 3 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 4 | 5 | Remapped | NW_018654724.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 18 | 165 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 179 | 605 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 74 | 140 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 23 | 32 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 23 | 32 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 24 | 33 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 71 | 161 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 23 | 32 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 41 | 65 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 10 | 33 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 1 | Remapped | NT_187621.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 46 | 99 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 2 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 2 | 2 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 19 | 26 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 86 | 191 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 3 | 5 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 6 | 6 | Remapped | NW_014040929.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 17 | 20 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 1 | 1 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 2 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 1 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 5 | 5 | Remapped | NW_003315968.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 37 | 70 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 33 | 36 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 2 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 67 | 480 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 3 | 3 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 5,883 | 41,285 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 4,756 | 17,621 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,358 | 25,027 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 4,166 | 29,511 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 3,051 | 11,048 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 3,500 | 18,844 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 4,446 | 18,133 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 4,882 | 21,418 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 3,447 | 11,224 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 3,204 | 8,229 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 2,844 | 10,070 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 2,375 | 12,122 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,496 | 5,151 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 3,346 | 11,634 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 4,634 | 17,066 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 3,619 | 13,094 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 2,563 | 12,958 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 1,236 | 2,228 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 2,101 | 8,241 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,285 | 8,107 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 924 | 2,783 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,595 | 6,334 | Remapped | NC_000022.10 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 3 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 2 | 2 | Remapped | NW_003315904.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 4 | 7 | Remapped | NW_003315905.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 6 | 6 | Remapped | NW_003315907.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 839 | 2,828 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 34 | 74 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 4 | 4 | Remapped | NW_003871057.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 2 | Remapped | NW_003315908.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 4 | 9 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 3 | 3 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 4 | 4 | Remapped | NW_004504299.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 1 | Remapped | NW_003315913.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 4 | 4 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 1 | 1 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 19 | 27 | Remapped | NW_003871060.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 17 | 52 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 4 | 6 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 195 | 4,997 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 17 | 28 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 1 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 182 | 1,233 | Remapped | NW_004775427.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 13 | 40 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 15 | 19 | Remapped | NW_003571036.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 6 | 8 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 4 | 5 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 10 | 14 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 22 | 26 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 85 | 489 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 26 | 28 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 63 | 195 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 26 | 183 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 8 | 8 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 4 | 4 | Remapped | NW_004504300.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 26 | 35 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 14 | 35 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 375 | 10,832 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 1 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 80 | 189 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 1 | 1 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 19 | 29 | Remapped | NW_004775430.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 2 | 2 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 171 | 665 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 3 | 3 | Remapped | NW_004775431.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 1 | 1 | Remapped | NW_003315925.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 1 | 1 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 8 | 18 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 6 | 12 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 3 | 4 | Remapped | NW_004070868.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 1 | 2 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 2 | 2 | Remapped | NW_003315933.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 15 | 78 | Remapped | NW_003315934.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 22 | 59 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 657 | 1,709 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 10 | 12 | Remapped | NW_003871071.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 2 | 2 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 4 | 5 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 11 | 35 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 5 | 5 | Remapped | NW_003571045.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 4 | 4 | Remapped | NW_003871072.2 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 1 | 1 | Remapped | NW_003871075.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 4 | 4 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 17 | 34 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 4 | 4 | Remapped | NW_004070871.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 2 | 2 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 1 | 1 | Remapped | NW_003315939.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 3 | 6 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 2 | 2 | Remapped | NW_003315942.2 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 40 | 78 | Remapped | NW_003571048.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 1 | Remapped | NW_003571050.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 3 | 3 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 2 | 2 | Remapped | NW_004504303.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 746 | 4,031 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 3 | 3 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 4 | 4 | Remapped | NW_003871084.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 124 | 918 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 3 | 4 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 3 | 3 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 108 | 1,125 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 72 | 157 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 16 | 190 | Remapped | NW_003315953.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 4 | 4 | Remapped | NW_003571052.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 440 | 1,762 | Remapped | NW_003871086.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 14 | 23 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 6 | 17 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 3 | 3 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 4 | 4 | Remapped | NW_003871090.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 29 | 326 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 22 | 23 | Remapped | NW_004070872.2 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 9 | 18 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 4 | 12 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 46 | 99 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 2 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 2 | 2 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 19 | 26 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 146 | 1,338 | Remapped | NW_003571053.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 1 | 1 | Remapped | NW_003571054.1 |
| NW_003571055.1 | Chr19|NW_003571055.1 | 1 | 1 | Remapped | NW_003571055.1 |
| NW_003571056.1 | Chr19|NW_003571056.1 | 1 | 1 | Remapped | NW_003571056.1 |
| NW_003571057.1 | Chr19|NW_003571057.1 | 1 | 1 | Remapped | NW_003571057.1 |
| NW_003571058.1 | Chr19|NW_003571058.1 | 1 | 1 | Remapped | NW_003571058.1 |
| NW_003571059.1 | Chr19|NW_003571059.1 | 1 | 1 | Remapped | NW_003571059.1 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 4 | 6 | Remapped | NW_003571060.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 3 | 4 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 8 | 8 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 109 | 436 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 15 | 42 | Remapped | NW_004775434.1 |
| NW_003315966.1 | Chr20|NW_003315966.1 | 1 | 1 | Remapped | NW_003315966.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 17 | 54 | Remapped | NW_003571063.2 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 2 | 2 | Remapped | NW_004504304.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 1 | 1 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 5 | 5 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 8 | 8 | Remapped | NW_004775435.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 3 | 3 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 1 | 1 | Remapped | NW_003871096.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 5,885 | 41,287 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 4,756 | 17,621 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 4,358 | 25,027 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 4,240 | 29,742 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 3,051 | 11,048 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 3,500 | 18,844 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 4,570 | 23,591 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 4,893 | 21,432 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 3,449 | 11,228 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 3,214 | 8,251 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 2,844 | 10,070 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 2,413 | 12,198 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 1,496 | 5,151 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 3,346 | 11,634 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 4,813 | 17,294 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 3,619 | 13,094 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 2,617 | 13,126 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 1,236 | 2,228 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 2,215 | 8,685 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 1,285 | 8,107 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 924 | 2,783 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 1,595 | 6,334 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 5,885 | 5,222 | 98 | 128 | 0 | 437 | 41,287 | 39,060 | 114 | 291 | 0 | 1,822 |
| NC_000002.10 | Chr2 | 4,756 | 4,029 | 185 | 473 | 0 | 69 | 17,621 | 15,634 | 690 | 1,174 | 0 | 123 |
| NC_000003.10 | Chr3 | 4,358 | 4,167 | 153 | 13 | 0 | 25 | 25,027 | 22,795 | 2,185 | 14 | 0 | 33 |
| NC_000004.10 | Chr4 | 4,240 | 3,529 | 149 | 96 | 62 | 404 | 29,742 | 22,763 | 161 | 308 | 212 | 6,298 |
| NC_000005.8 | Chr5 | 3,051 | 2,891 | 53 | 69 | 0 | 38 | 11,048 | 10,568 | 56 | 352 | 0 | 72 |
| NC_000006.10 | Chr6 | 3,500 | 3,250 | 82 | 12 | 0 | 156 | 18,844 | 17,878 | 140 | 13 | 0 | 813 |
| NC_000007.12 | Chr7 | 4,570 | 3,738 | 186 | 250 | 2 | 394 | 23,591 | 11,333 | 5,492 | 1,052 | 25 | 5,689 |
| NC_000008.9 | Chr8 | 4,893 | 3,748 | 286 | 694 | 0 | 165 | 21,432 | 17,438 | 593 | 2,745 | 0 | 656 |
| NC_000009.10 | Chr9 | 3,449 | 2,952 | 222 | 253 | 2 | 20 | 11,228 | 9,911 | 336 | 940 | 4 | 37 |
| NC_000010.9 | Chr10 | 3,214 | 2,089 | 78 | 340 | 2 | 705 | 8,251 | 5,225 | 86 | 1,083 | 5 | 1,852 |
| NC_000011.8 | Chr11 | 2,844 | 2,624 | 51 | 119 | 0 | 50 | 10,070 | 9,751 | 87 | 141 | 0 | 91 |
| NC_000012.10 | Chr12 | 2,413 | 2,295 | 49 | 53 | 0 | 16 | 12,198 | 12,034 | 59 | 86 | 0 | 19 |
| NC_000013.9 | Chr13 | 1,496 | 1,428 | 35 | 33 | 0 | 0 | 5,151 | 5,060 | 46 | 45 | 0 | 0 |
| NC_000014.7 | Chr14 | 3,346 | 2,195 | 402 | 3 | 0 | 746 | 11,634 | 5,625 | 1,974 | 4 | 0 | 4,031 |
| NC_000015.8 | Chr15 | 4,813 | 3,026 | 185 | 1,416 | 179 | 7 | 17,294 | 11,512 | 704 | 4,843 | 228 | 7 |
| NC_000016.8 | Chr16 | 3,619 | 3,188 | 30 | 7 | 0 | 394 | 13,094 | 12,061 | 31 | 7 | 0 | 995 |
| NC_000017.9 | Chr17 | 2,617 | 1,126 | 393 | 300 | 3 | 795 | 13,126 | 3,751 | 4,159 | 822 | 3 | 4,391 |
| NC_000018.8 | Chr18 | 1,236 | 1,103 | 114 | 3 | 0 | 16 | 2,228 | 2,041 | 151 | 3 | 0 | 33 |
| NC_000019.8 | Chr19 | 2,215 | 1,843 | 97 | 35 | 0 | 240 | 8,685 | 6,700 | 417 | 49 | 0 | 1,519 |
| NC_000020.9 | Chr20 | 1,285 | 1,225 | 31 | 9 | 0 | 20 | 8,107 | 7,875 | 162 | 13 | 0 | 57 |
| NC_000021.7 | Chr21 | 924 | 880 | 24 | 6 | 0 | 14 | 2,783 | 2,686 | 76 | 7 | 0 | 14 |
| NC_000022.9 | Chr22 | 1,595 | 1,417 | 127 | 47 | 0 | 4 | 6,334 | 5,141 | 363 | 826 | 0 | 4 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 5,885 | 4,489 | 658 | 338 | 98 | 302 | 41,287 | 29,385 | 3,702 | 1,645 | 223 | 6,332 |
| NC_000002.10 | Chr2 | 4,756 | 3,507 | 486 | 345 | 0 | 418 | 17,621 | 14,172 | 1,229 | 820 | 0 | 1,400 |
| NC_000003.10 | Chr3 | 4,358 | 3,924 | 220 | 4 | 0 | 210 | 25,027 | 22,088 | 430 | 4 | 0 | 2,505 |
| NC_000004.10 | Chr4 | 4,240 | 3,381 | 413 | 102 | 62 | 282 | 29,742 | 22,231 | 1,827 | 316 | 212 | 5,156 |
| NC_000005.8 | Chr5 | 3,051 | 2,748 | 137 | 64 | 0 | 102 | 11,048 | 10,111 | 205 | 347 | 0 | 385 |
| NC_000006.10 | Chr6 | 3,500 | 3,035 | 175 | 74 | 23 | 193 | 18,844 | 17,533 | 249 | 267 | 33 | 762 |
| NC_000007.12 | Chr7 | 4,570 | 3,150 | 470 | 279 | 39 | 632 | 23,591 | 9,282 | 7,708 | 2,441 | 468 | 3,692 |
| NC_000008.9 | Chr8 | 4,893 | 2,920 | 312 | 552 | 0 | 1,109 | 21,432 | 14,508 | 480 | 2,451 | 0 | 3,993 |
| NC_000009.10 | Chr9 | 3,449 | 2,452 | 47 | 625 | 255 | 70 | 11,228 | 7,537 | 54 | 2,504 | 1,006 | 127 |
| NC_000010.9 | Chr10 | 3,214 | 1,959 | 278 | 755 | 133 | 89 | 8,251 | 5,033 | 405 | 1,879 | 647 | 287 |
| NC_000011.8 | Chr11 | 2,844 | 2,434 | 203 | 36 | 78 | 93 | 10,070 | 9,293 | 450 | 50 | 92 | 185 |
| NC_000012.10 | Chr12 | 2,413 | 2,004 | 66 | 14 | 0 | 329 | 12,198 | 7,979 | 77 | 16 | 0 | 4,126 |
| NC_000013.9 | Chr13 | 1,496 | 1,372 | 59 | 32 | 2 | 31 | 5,151 | 4,991 | 69 | 44 | 2 | 45 |
| NC_000014.7 | Chr14 | 3,346 | 1,318 | 569 | 496 | 21 | 942 | 11,634 | 3,465 | 1,249 | 2,238 | 99 | 4,583 |
| NC_000015.8 | Chr15 | 4,813 | 2,468 | 356 | 1,563 | 13 | 413 | 17,294 | 10,196 | 640 | 5,115 | 15 | 1,328 |
| NC_000016.8 | Chr16 | 3,619 | 2,925 | 76 | 385 | 0 | 233 | 13,094 | 11,337 | 85 | 929 | 0 | 743 |
| NC_000017.9 | Chr17 | 2,617 | 1,025 | 715 | 91 | 2 | 784 | 13,126 | 3,189 | 5,759 | 145 | 2 | 4,031 |
| NC_000018.8 | Chr18 | 1,236 | 1,030 | 140 | 11 | 0 | 55 | 2,228 | 1,814 | 165 | 28 | 0 | 221 |
| NC_000019.8 | Chr19 | 2,215 | 1,877 | 158 | 5 | 0 | 175 | 8,685 | 7,774 | 540 | 6 | 0 | 365 |
| NC_000020.9 | Chr20 | 1,285 | 1,159 | 107 | 1 | 0 | 18 | 8,107 | 7,804 | 281 | 1 | 0 | 21 |
| NC_000021.7 | Chr21 | 924 | 661 | 203 | 2 | 0 | 58 | 2,783 | 2,296 | 324 | 2 | 0 | 161 |
| NC_000022.9 | Chr22 | 1,595 | 869 | 527 | 95 | 1 | 103 | 6,334 | 3,822 | 1,853 | 473 | 1 | 185 |
Samplesets
Number of Samplesets: 3
- Sampleset ID:
- 1
- Sampleset Type:
- Case
- Description:
- Children referred to Signature Genomics with a general diagnosis of intellectual disability (ID) and/or developmental delay (DD).
- Size:
- 29,083
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Global developmental delay
- Sampleset ID:
- 2
- Name:
- ARIC
- Sampleset Type:
- Control
- Description:
- The Atherosclerosis Risk in Communities (ARIC) Cohort Component. Affymetrix SNP6. dbGaP:phs000090
- Size:
- 8,733 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 3
- Name:
- WTCCC2 (58C)
- Sampleset Type:
- Control
- Description:
- Wellcome Trust Case Control Consortium 1958 British Birth Cohort. Affymetrix SNP6. PMID:20360734; study: https://www.wtccc.org.uk/
- Size:
- 2,523 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | SignatureChip OS | 29,415 |
| 2 | Discovery | SNP array | Probe signal intensity | Affymetrix SNP Array 6.0 | 225,558 |
| 3 | Discovery | SNP array | Probe signal intensity | Affymetrix SNP Array 6.0 | 63,802 |