nstd112 (Sudmant et al. 2015)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- John Huddleston
- Description:
- To explore the diversity and selective signatures of duplications and deletions in human copy number variation (CNV), we sequenced 236 individuals from 125 distinct human populations. We observed that duplications exhibit fundamentally different population genetic and selective signatures than deletions and are more likely to be stratified between human populations. We find that the proportion of CNV to SNV base pairs is greater among non-Africans than it is among African populations but we conclude that this difference is likely due to unique aspects of non-African population history as opposed to differences in CNV load. See Variant Summary counts for nstd112 in dbVar Variant Summary.
- Project:
- PRJNA285786
- Publication(s):
- Sudmant et al. 2015
Detailed Information: Download 15012 Variant Regions, Download 3303297 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,266 | 273,773 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,165 | 258,671 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 742 | 164,949 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 671 | 149,571 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 759 | 168,032 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 788 | 175,481 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 991 | 220,304 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 698 | 154,840 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 603 | 129,424 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 655 | 144,929 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 659 | 147,781 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 562 | 126,147 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 404 | 90,747 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 809 | 175,251 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 724 | 154,608 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 675 | 145,075 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 519 | 112,890 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 342 | 76,670 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 340 | 75,738 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 238 | 52,489 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 222 | 47,670 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 493 | 107,283 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 541 | 122,266 | Remapped | NC_000023.11 |
| NT_187513.1 | Unplaced|NT_187513.1 | 1 | 226 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 4 | 355 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 71 | Remapped | NT_187364.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 2 | 252 | Remapped | NT_187367.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 3 | 678 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 4 | 888 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 16 | 3,406 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 9 | 2,022 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 4 | 902 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 226 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 9 | 2,022 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 1 | 226 | Remapped | NW_003315905.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 440 | Remapped | NW_003315906.1 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 226 | Remapped | NW_009646194.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 1 | 226 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 3 | 678 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 3 | 677 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 19 | 3,861 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 226 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 452 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 226 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 14 | 2,948 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 10 | 1,997 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 3 | 678 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 452 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 28 | 6,133 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 4 | 515 | Remapped | NT_187524.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 2 | 452 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 14 | 3,000 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 1 | 226 | Remapped | NT_187529.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 226 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 28 | 6,133 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 8 | 1,173 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 226 | Remapped | NW_011332689.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 21 | 3,606 | Remapped | NW_012132915.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 2 | 452 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 12 | 1,436 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 12 | 1,436 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 12 | 1,436 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 12 | 1,436 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 12 | 1,436 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 12 | 1,436 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 5 | 1,124 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 2 | 452 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 4 | 890 | Remapped | NT_187536.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 6 | 1,231 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 12 | 1,436 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 226 | Remapped | NW_003315913.1 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 226 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 3 | 678 | Remapped | NW_011332691.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 1 | 226 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 226 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 452 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 226 | Remapped | NW_019805489.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 225 | Remapped | NW_019805491.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 4 | 904 | Remapped | NT_187679.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 226 | Remapped | NT_187542.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 2 | 452 | Remapped | NT_187545.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 452 | Remapped | NW_003315915.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 226 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 1 | 226 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 226 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 452 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 226 | Remapped | NT_187547.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 226 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 5 | 1,123 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 4 | 681 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 1 | 226 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 7 | 1,260 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 225 | Remapped | NW_003315920.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 226 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 226 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 3 | 678 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 226 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 2 | 452 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 226 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 2 | 439 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 226 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 5 | 1,127 | Remapped | NW_012132918.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 452 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 9 | 1,912 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 7 | 1,437 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 226 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 10 | 2,197 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 16 | 3,382 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 226 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 14 | 2,923 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 226 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 226 | Remapped | NW_017852929.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 5 | 946 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 5 | 1,020 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 226 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 2 | 452 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 5 | 1,130 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 4 | 891 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 452 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 1 | 226 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 3 | 526 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 1 | 226 | Remapped | NT_187571.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 226 | Remapped | NT_187573.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 24 | 5,355 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 4 | 904 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 3 | 678 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 3 | 673 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 2 | 452 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 452 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 41 | 8,141 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 226 | Remapped | NT_187578.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 452 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 2 | 444 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 226 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 226 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 226 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 452 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 2 | 449 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 1 | 226 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 4 | 899 | Remapped | NW_013171806.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 226 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 4 | 903 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 452 | Remapped | NT_187583.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 452 | Remapped | NW_011332695.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 226 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 11 | 2,466 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 1 | 226 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 3 | 677 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 9 | 2,018 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 452 | Remapped | NT_187587.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 2 | 448 | Remapped | NT_187591.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 226 | Remapped | NW_003315940.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 4 | 707 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 678 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 226 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 3 | 667 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 226 | Remapped | NW_013171809.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 226 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 1 | 226 | Remapped | NW_018654719.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 226 | Remapped | NW_019805499.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 1 | 226 | Remapped | NT_187595.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 1 | 226 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 4 | 904 | Remapped | NW_011332698.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 226 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 3 | 230 | Remapped | NT_113796.3 |
| NT_187600.1 | Chr14|NT_187600.1 | 239 | 50,055 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 5 | 1,129 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 13 | 2,787 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 5 | 1,122 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 84 | 18,453 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 12 | 2,695 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 6 | 1,317 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 383 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 13 | 2,589 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 21 | 4,397 | Remapped | NW_003315943.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 103 | 22,546 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 48 | 10,502 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 2 | 452 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 5 | 1,122 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 226 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 226 | Remapped | NW_013171812.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 3 | 664 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 2 | 452 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 9 | 994 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 15 | 3,358 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 16 | 2,097 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 3 | 663 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 1 | 226 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 1 | 226 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 7 | 1,566 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 14 | 2,652 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 1 | 226 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 20 | 4,477 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 226 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 226 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 226 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 3 | 669 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 3 | 653 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 226 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 4 | 902 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 8 | 1,789 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 2 | 445 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 226 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 1 | 226 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 2 | 452 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 445 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 678 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 226 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 1 | 226 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 2 | 452 | Remapped | NW_014040928.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 225 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 32 | 6,954 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 13 | 2,921 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 226 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 226 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 226 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 17 | 3,820 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 226 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 7 | 1,573 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 2 | 451 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 226 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 1 | 226 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 6 | 1,354 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 226 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 226 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 21 | 4,715 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 226 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 2 | 452 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 226 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 226 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 226 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 1 | 226 | Remapped | NT_187626.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 452 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 226 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 3 | 665 | Remapped | NT_187682.1 |
| NW_004504305.1 | Chr22|NW_004504305.1 | 1 | 225 | Remapped | NW_004504305.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 4 | 902 | Remapped | NW_015148969.1 |
| NT_187386.1 | Chr22|NT_187386.1 | 1 | 226 | Remapped | NT_187386.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 18 | 3,879 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 226 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 451 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 32 | 7,031 | Remapped | NT_187633.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 1 | 225 | Remapped | NW_003315971.2 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 226 | Remapped | NW_003315972.2 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 226 | Remapped | NW_017363820.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 1,327 | 285,865 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,170 | 259,400 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 742 | 164,949 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 671 | 149,571 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 759 | 168,032 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 790 | 175,837 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 1,001 | 222,509 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 700 | 155,292 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 605 | 129,876 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 658 | 145,547 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 659 | 147,781 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 562 | 126,147 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 404 | 90,747 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 819 | 177,342 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 731 | 155,987 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 675 | 145,075 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 530 | 114,312 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 342 | 76,670 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 351 | 77,976 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 238 | 52,489 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 222 | 47,670 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 511 | 111,053 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 545 | 123,170 | Submitted | NC_000023.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 1,327 | 1,043 | 171 | 39 | 14 | 60 | 285,865 | 227,275 | 34,910 | 7,811 | 2,881 | 12,988 |
| NC_000002.11 | Chr2 | 1,170 | 1,054 | 21 | 14 | 2 | 79 | 259,400 | 236,304 | 4,413 | 2,593 | 399 | 15,691 |
| NC_000003.11 | Chr3 | 742 | 693 | 9 | 0 | 0 | 40 | 164,949 | 155,302 | 2,029 | 0 | 0 | 7,618 |
| NC_000004.11 | Chr4 | 671 | 651 | 8 | 0 | 0 | 12 | 149,571 | 145,201 | 1,658 | 0 | 0 | 2,712 |
| NC_000005.9 | Chr5 | 759 | 735 | 6 | 0 | 0 | 18 | 168,032 | 162,944 | 1,350 | 0 | 0 | 3,738 |
| NC_000006.11 | Chr6 | 790 | 753 | 6 | 11 | 2 | 18 | 175,837 | 168,051 | 1,245 | 2,133 | 356 | 4,052 |
| NC_000007.13 | Chr7 | 1,001 | 864 | 60 | 15 | 5 | 57 | 222,509 | 192,797 | 13,321 | 3,321 | 1,120 | 11,950 |
| NC_000008.10 | Chr8 | 700 | 603 | 5 | 0 | 0 | 92 | 155,292 | 134,599 | 1,129 | 0 | 0 | 19,564 |
| NC_000009.11 | Chr9 | 605 | 545 | 24 | 25 | 3 | 8 | 129,876 | 118,348 | 4,711 | 4,339 | 678 | 1,800 |
| NC_000010.10 | Chr10 | 658 | 609 | 31 | 5 | 3 | 10 | 145,547 | 135,103 | 6,616 | 958 | 618 | 2,252 |
| NC_000011.9 | Chr11 | 659 | 630 | 6 | 0 | 0 | 23 | 147,781 | 141,259 | 1,346 | 0 | 0 | 5,176 |
| NC_000012.11 | Chr12 | 562 | 535 | 1 | 0 | 0 | 26 | 126,147 | 120,273 | 226 | 0 | 0 | 5,648 |
| NC_000013.10 | Chr13 | 404 | 395 | 1 | 1 | 0 | 7 | 90,747 | 88,715 | 224 | 226 | 0 | 1,582 |
| NC_000014.8 | Chr14 | 819 | 443 | 100 | 14 | 7 | 255 | 177,342 | 98,698 | 20,757 | 2,876 | 1,458 | 53,553 |
| NC_000015.9 | Chr15 | 731 | 559 | 32 | 8 | 0 | 132 | 155,987 | 119,774 | 6,208 | 1,204 | 0 | 28,801 |
| NC_000016.9 | Chr16 | 675 | 608 | 1 | 4 | 0 | 62 | 145,075 | 130,414 | 225 | 792 | 0 | 13,644 |
| NC_000017.10 | Chr17 | 530 | 419 | 14 | 16 | 1 | 80 | 114,312 | 91,965 | 3,141 | 2,874 | 226 | 16,106 |
| NC_000018.9 | Chr18 | 342 | 328 | 0 | 1 | 0 | 13 | 76,670 | 73,514 | 0 | 226 | 0 | 2,930 |
| NC_000019.9 | Chr19 | 351 | 300 | 14 | 0 | 0 | 37 | 77,976 | 66,522 | 3,126 | 0 | 0 | 8,328 |
| NC_000020.10 | Chr20 | 238 | 234 | 1 | 0 | 0 | 3 | 52,489 | 51,585 | 226 | 0 | 0 | 678 |
| NC_000021.8 | Chr21 | 222 | 209 | 9 | 0 | 0 | 4 | 47,670 | 44,791 | 1,975 | 0 | 0 | 904 |
| NC_000022.10 | Chr22 | 511 | 330 | 129 | 4 | 2 | 46 | 111,053 | 72,097 | 27,647 | 897 | 288 | 10,124 |
| NC_000023.10 | ChrX | 545 | 441 | 75 | 23 | 4 | 2 | 123,170 | 99,666 | 16,950 | 5,198 | 904 | 452 |
Samplesets
Number of Samplesets: 9
- Sampleset ID:
- 1
- Name:
- AFR
- Description:
- Africans
- Size:
- 36
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN02603818 | Genomic/Cell_Line | HGDP00991 | Male | San | Not reported |
| SAMEA2164340 | Genomic/Cell_Line | HGDP00932 | Male | Yoruba | Not reported |
| SAMEA2164391 | Genomic/Cell_Line | HGDP01035 | Male | BantuSEHerero | Not reported |
| SAMN03783159 | Genomic/Cell_Line | SAH31 | Male | Saharawi | Not reported |
| SAMN00779933 | HG02464 | Male | GambiaGWD | Not reported | |
| SAMEA2164390 | Genomic/Cell_Line | HGDP01034 | Male | BantuSETswana | Not reported |
| SAMEA2164490 | Genomic/Cell_Line | HGDP01253 | Male | Mozabite | Not reported |
| SAMN00001060 | Genomic | NA19044 | Male | LuhyaLWK | Not reported |
| SAMN02603821 | Genomic/Cell_Line | HGDP01032 | Male | San | Not reported |
| SAMN02603829 | Genomic/Cell_Line | HGDP01274 | Female | Mozabite | Not reported |
| SAMEA2164386 | Genomic/Cell_Line | HGDP01030 | Male | BantuSETswana | Not reported |
| SAMN00779943 | Genomic/Cell_Line | HG02574 | Female | GambiaGWD | Not reported |
| SAMN03783161 | Genomic/Cell_Line | HGDP00928 | Female | Yoruba | Not reported |
| SAMN03783157 | Genomic | Ayodo502C | Female | Luo | Not reported |
| SAMN03783156 | Genomic/Cell_Line | SA0722 | Female | KhomaniSan | Not reported |
| SAMN01036783 | Genomic/Cell_Line | HG03085 | Female | MendeMSL | Not reported |
| SAMEA2164164 | Genomic/Cell_Line | HGDP00461 | Male | Biaka | Not reported |
| SAMN03783158 | Genomic/Cell_Line | HGDP00915 | Female | Mandenka | Not reported |
| SAMEA2164175 | Genomic/Cell_Line | HGDP00474 | Male | mbuti | Not reported |
| SAMN01036803 | HG03100 | Male | EsanESN | Not reported | |
| SAMEA2164384 | Genomic/Cell_Line | HGDP01028 | Male | BantuSEHerero | Not reported |
| SAMN00008106 | Genomic/Cell_Line | NA21581 | Male | MasaiMKK | Not reported |
| SAMN03783155 | Genomic/Cell_Line | DNK5 | Male | Dinka | Not reported |
| SAMN01036781 | Genomic/Cell_Line | HG03078 | Male | MendeMSL | Not reported |
| SAMN01036798 | Genomic/Cell_Line | HG02943 | Female | EsanESN | Not reported |
| SAMEA2164160 | Genomic/Cell_Line | HGDP00457 | Male | Biaka | Not reported |
| SAMEA2164153 | Genomic/Cell_Line | HGDP00449 | Male | Mbuti | Not reported |
| SAMEA1706724 | Genomic/Cell_Line | HGDP00987 | Male | San | Not reported |
| SAMN03783154 | Genomic/Cell_Line | DNK11 | Male | Dinka | Not reported |
| SAMEA2164595 | Genomic/Cell_Line | HGDP01417 | Male | BantuKenya | Not reported |
| SAMEA2164453 | Genomic/Cell_Line | HGDP01199 | Male | Mandenka | Not reported |
| SAMN00001044 | Genomic | NA19023 | Female | LuhyaLWK | Not reported |
| SAMN03783160 | Genomic/Cell_Line | Ayodo81S | Female | Somali | Not reported |
| SAMEA1706756 | Genomic/Cell_Line | HGDP01414 | Female | BantuKenya | Not reported |
| SAMN02603792 | Genomic/Cell_Line | HGDP00476 | Female | Mbuti | Not reported |
| SAMN00008078 | Genomic/Cell_Line | NA21490 | Male | MasaiMKK | Not reported |
- Sampleset ID:
- 2
- Name:
- AMR
- Description:
- American Indians
- Size:
- 18
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN03783174 | Genomic/Cell_Line | zapo0098 | Male | Zapotec | Not reported |
| SAMN03783171 | Genomic/Cell_Line | Peru60 | Female | Quechua | Not reported |
| SAMN03783166 | Genomic/Cell_Line | Mixa0099 | Male | Mixtec | Not reported |
| SAMEA2164395 | HGDP01047 | Male | Pima | Not reported | |
| SAMN03783163 | Genomic/Cell_Line | HGDP01018 | Female | Karitiana | Not reported |
| SAMEA2164380 | Genomic/Cell_Line | HGDP01012 | Male | Karitiana | Not reported |
| SAMN03783170 | Genomic/Cell_Line | NA11201 | Female | Quechua | Not reported |
| SAMEA1706748 | Genomic/Cell_Line | HGDP00702 | Female | Piapoco | Not reported |
| SAMN02603802 | Genomic/Cell_Line | HGDP00855 | Female | Maya | Not reported |
| SAMN03783168 | Genomic/Cell_Line | HGDP00706 | Female | Piapoco | Not reported |
| SAMN03783164 | Genomic/Cell_Line | mixe0002 | Female | Mixe | Not reported |
| SAMN03783165 | Genomic/Cell_Line | mixe0042 | Female | Mixe | Not reported |
| SAMN03783172 | Genomic/Cell_Line | HGDP00846 | Female | Surui | Not reported |
| SAMN03783173 | Genomic/Cell_Line | HGDP00852 | Female | Surui | Not reported |
| SAMN02603804 | Genomic/Cell_Line | HGDP00857 | Female | Maya | Not reported |
| SAMN03783167 | Genomic/Cell_Line | mixa0105 | Female | Mixtec | Not reported |
| SAMN03783162 | TGBS21 | Male | Chane | Not reported | |
| SAMN03783169 | Genomic/Cell_Line | HGDP01044 | Female | Pima | Not reported |
- Sampleset ID:
- 3
- Name:
- EA
- Description:
- East Asian
- Size:
- 45
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| SAMN03783187 | Genomic/Cell_Line | CHI-034 | Female | Thai | Not reported | |
| SAMEA2164415 | Genomic/Cell_Line | HGDP01095 | Male | Tujia | Not reported | |
| SAMEA1706731 | Genomic/Cell_Line | HGDP01215 | Female | Daur | Not reported | |
| SAMN03783184 | Genomic/Cell_Line | HGDP01198 | Female | Miao | Not reported | |
| SAMN00001633 | Genomic/Cell_Line | NA18940 | Male | Japanese | Not reported | |
| SAMEA2164448 | Genomic/Cell_Line | HGDP01191 | Male | Miao | Not reported | |
| SAMEA2164252 | Genomic/Cell_Line | HGDP00717 | Male | Cambodian | Not reported | |
| SAMN03783181 | Genomic/Cell_Line | HGDP00749 | Male | Japanese | Not reported | |
| SAMN03783175 | NA13607 | Male | Ami | Not reported | ||
| SAMN03783183 | Genomic/Cell_Line | NA00726 | Female | Korean | Not reported | |
| SAMN02603795 | Genomic/Cell_Line | HGDP00713 | Female | Cambodian | Not reported | |
| SAMEA1706762 | Genomic/Cell_Line | HGDP01188 | Female | Yi | Not reported | |
| SAMEA2164290 | Genomic/Cell_Line | HGDP00785 | Male | Han | Not reported | |
| SAMEA2164557 | Genomic/Cell_Line | HGDP01344 | Male | Naxi | Not reported | |
| SAMN03783177 | Genomic/Cell_Line | NA13604 | Male | Atayal | Not reported | |
| SAMEA2164535 | Genomic/Cell_Line | HGDP01312 | Male | Dai | Not reported | |
| SAMEA2164456 | Genomic/Cell_Line | HGDP01203 | Male | Oroqen | Not reported | |
| SAMEA2164473 | Genomic/Cell_Line | HGDP01228 | Male | Mongola | Not reported | |
| SAMN03783185 | Genomic/Cell_Line | HGDP01211 | Female | Oroqen | Not reported | |
| SAMEA2164437 | Genomic/Cell_Line | HGDP01179 | Male | Yi | Not reported | |
| SAMN03783182 | Genomic/Cell_Line | HGDP00773 | Female | Japanese | Not reported | |
| SAMEA1706733 | Genomic/Cell_Line | HGDP01345 | Female | Naxi | Not reported | |
| SAMN03783180 | Genomic/Cell_Line | HGDP01242 | Female | Hezhen | Not reported | |
| SAMN03783179 | Genomic/Cell_Line | HGDP01315 | Female | Dai | Not reported | |
| SAMEA2164561 | Genomic/Cell_Line | HGDP01350 | Male | Tu | Not reported | |
| SAMEA2164540 | Genomic/Cell_Line | HGDP01320 | Male | Lahu | Not reported | |
| SAMEA2164489 | Genomic/Cell_Line | HGDP01250 | Male | Xibo | Not reported | |
| SAMN03783188 | Genomic/Cell_Line | HGDP01355 | Female | Tu | Not reported | |
| SAMEA1706757 | Genomic/Cell_Line | HGDP01323 | Female | Lahu | Not reported | |
| SAMEA2164552 | Genomic/Cell_Line | HGDP01338 | Male | Naxi | Not reported | |
| SAMEA2164522 | Genomic/Cell_Line | HGDP01297 | Male | Uygur | Not reported | |
| SAMEA2164480 | Genomic/Cell_Line | HGDP01240 | Male | Hezhen | Not reported | |
| SAMN00249822 | Genomic/Cell_Line | HG01846 | Male | KinhKHV | Not reported | |
| SAMEA1706716 | Genomic/Cell_Line | HGDP00783 | Female | Han | Not reported | |
| SAMN03783178 | Genomic/Cell_Line | Bu5 | Male | Burmese | Not reported | |
| SAMN00798868 | Genomic/Cell_Line | ND19394 | Male | Korean | 69 Years | Not reported |
| SAMEA2164550 | Genomic/Cell_Line | HGDP01333 | Male | She | Not reported | |
| SAMEA1706717 | Genomic/Cell_Line | HGDP01098 | Female | Tujia | Not reported | |
| SAMEA1706740 | Genomic/Cell_Line | HGDP01223 | Female | Mongola | Not reported | |
| SAMN03783186 | Genomic/Cell_Line | CHI-007 | Male | Thai | Not reported | |
| SAMN00249816 | Genomic/Cell_Line | HG01600 | Female | KinhKHV | Not reported | |
| SAMEA2164485 | Genomic/Cell_Line | HGDP01246 | Male | Xibo | Not reported | |
| SAMN03783189 | Genomic/Cell_Line | HGDP01306 | Female | Uygur | Not reported | |
| SAMN03783176 | Genomic/Cell_Line | NA13616 | Male | Ami | Not reported | |
| SAMEA1706737 | Genomic/Cell_Line | HGDP01314 | Female | Dai | Not reported |
- Sampleset ID:
- 4
- Name:
- OCN
- Description:
- Oceanic
- Size:
- 21
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN03783191 | IHW9193 | Male | AustraliaECCAC | Not reported | |
| SAMEA2164198 | Genomic/Cell_Line | HGDP00547 | Male | Papuan | Not reported |
| SAMN03783195 | Genomic/Cell_Line | NA17386 | Male | Maori | Not reported |
| SAMN03783194 | Genomic/Cell_Line | Igor21 | Male | Igorot | Not reported |
| SAMEA2164203 | Genomic/Cell_Line | HGDP00555 | Male | Papuan | Not reported |
| SAMEA2164202 | Genomic/Cell_Line | HGDP00553 | Male | Papuan | Not reported |
| SAMEA2164204 | Genomic/Cell_Line | HGDP00556 | Male | Papuan | Not reported |
| SAMEA2164195 | Genomic/Cell_Line | HGDP00543 | Male | Papuan | Not reported |
| SAMEA1706753 | Genomic/Cell_Line | HGDP00656 | Female | Bougainville | Not reported |
| SAMEA781343 | Genomic/Cell_Line | HGDP00551 | Male | Papuan | Not reported |
| SAMN03783192 | Dus16 | Female | Dusun | Not reported | |
| SAMN03783190 | Genomic/Cell_Line | IHW9118 | Female | AustraliaECCAC | Not reported |
| SAMEA2164196 | Genomic/Cell_Line | HGDP00545 | Male | Papuan | Not reported |
| SAMN03783193 | Genomic/Cell_Line | NA17385 | Male | Hawaiian | Not reported |
| SAMEA2164199 | Genomic/Cell_Line | HGDP00548 | Male | Papuan | Not reported |
| SAMEA2164200 | Genomic/Cell_Line | HGDP00549 | Male | Papuan | Not reported |
| SAMEA2164192 | Genomic/Cell_Line | HGDP00540 | Male | Papuan | Not reported |
| SAMN03783196 | Genomic/Cell_Line | HGDP00550 | Female | Papuan | Not reported |
| SAMN03783198 | Genomic/Cell_Line | HGDP00554 | Female | Papuan | Not reported |
| SAMN03783197 | Genomic/Cell_Line | HGDP00552 | Female | Papuan | Not reported |
| SAMEA2164193 | Genomic/Cell_Line | HGDP00541 | Male | Papuan | Not reported |
- Sampleset ID:
- 5
- Name:
- SA
- Description:
- South Asian
- Size:
- 23
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMEA2164074 | Genomic/Cell_Line | HGDP00160 | Male | Makrani | Not reported |
| SAMEA2164052 | Genomic/Cell_Line | HGDP00124 | Male | Hazara | Not reported |
| SAMN01090934 | Genomic/Cell_Line | HG03007 | Female | BengaliBEB | Not reported |
| SAMEA2164029 | Genomic/Cell_Line | HGDP00090 | Male | Balochi | Not reported |
| SAMEA2163998 | Genomic/Cell_Line | HGDP00027 | Male | Brahui | Not reported |
| SAMN01036824 | Genomic/Cell_Line | HG02724 | Male | PunjabiPJL | Not reported |
| SAMN01090933 | Genomic/Cell_Line | HG03006 | Male | BengaliBEB | Not reported |
| SAMN01036837 | HG02790 | Female | PunjabiPJL | Not reported | |
| SAMN03783201 | Genomic/Cell_Line | K-2 | Male | Kusunda | Not reported |
| SAMEA2164130 | HGDP00328 | Male | Kalash | Not reported | |
| SAMN03783204 | HGDP00195 | Female | Sindhi | Not reported | |
| SAMN02603780 | Genomic/Cell_Line | HGDP00232 | Female | Pathan | Not reported |
| SAMEA2164149 | Genomic/Cell_Line | HGDP00428 | Male | Burusho | Not reported |
| SAMN03783202 | Genomic/Cell_Line | M13 | Male | Madiga | Not reported |
| SAMN01036830 | HG02783 | Male | PunjabiPJL | Not reported | |
| SAMN03783203 | Genomic/Cell_Line | HGDP00157 | Female | Makrani | Not reported |
| SAMEA2163994 | Genomic/Cell_Line | HGDP00019 | Male | Brahui | Not reported |
| SAMN03783199 | Genomic/Cell_Line | HGDP00338 | Female | Burusho | Not reported |
| SAMEA2164053 | Genomic/Cell_Line | HGDP00125 | Male | Hazara | Not reported |
| SAMEA1706719 | HGDP00286 | Female | Kalash | Not reported | |
| SAMEA2164098 | Genomic/Cell_Line | HGDP00216 | Male | Pathan | Not reported |
| SAMN03783200 | K-15 | Male | Kusunda | Not reported | |
| SAMEA2164095 | HGDP00208 | Male | Sindhi | Not reported |
- Sampleset ID:
- 6
- Name:
- SIB
- Description:
- Siberian
- Size:
- 22
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN03783215 | Genomic/Blood | Nlk3 | Female | Even | Not reported |
| SAMN03783223 | Genomic/Blood | Ul31 | Female | Ulchi | Not reported |
| SAMN03783224 | Genomic/Blood | Ul5 | Female | Ulchi | Not reported |
| SAMN03783217 | Blood | Mansi79 | Male | MansiKondaRiver | Not reported |
| SAMN03783214 | Blood | Nlk1 | Female | Even | Not reported |
| SAMN03783212 | Genomic/Blood | Sir40 | Female | EskimoSireniki | Not reported |
| SAMN03783216 | Blood | Kor82 | Female | Itelman | Not reported |
| SAMN03783222 | Genomic/Blood | Tuba9 | Female | Tubalar | Not reported |
| SAMN03783218 | Blood | Mansi41 | Female | MansiSosvaRiver | Not reported |
| SAMN03783211 | Blood | Nesk25 | Female | EskimoNaukan | Not reported |
| SAMN03783207 | Blood | Sir19 | Male | Chukchi | Not reported |
| SAMN03783210 | Blood | Nesk22 | Female | EskimoNaukan | Not reported |
| SAMN03783221 | Genomic/Blood | Tuba19 | Female | Tubalar | Not reported |
| SAMEA2164354 | Genomic/Cell_Line | HGDP00951 | Male | Yakut | Not reported |
| SAMN03783208 | Blood | Sir26 | Male | Chukchi | Not reported |
| SAMN03783225 | Genomic/Cell_Line | HGDP00956 | Female | Yakut | Not reported |
| SAMN03783213 | Nlk18 | Male | Even | Not reported | |
| SAMN03783205 | Blood | Ale20 | Female | AleutBeringIsland | Not reported |
| SAMN03783220 | Blood | Ale32 | Male | TlingitPreobrazhenskoye | Not reported |
| SAMN03783209 | Blood | Esk29 | Male | EskimoChaplino | Not reported |
| SAMN03783219 | Blood | Ale14 | Female | TlingitNikolskoye | Not reported |
| SAMN03783206 | Blood | Ale22 | Male | AleutBeringIsland | Not reported |
- Sampleset ID:
- 7
- Name:
- WEA
- Description:
- West Eurasian
- Size:
- 59
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| SAMN03783258 | Genomic/Cell_Line | 4695 | Female | YemeniteJew | Not reported | |
| SAMN00006344 | Genomic/Cell_Line | HG00126 | Male | EnglandGBR | Not reported | |
| SAMN00004646 | Genomic/Cell_Line | HG00128 | Female | EnglandGBR | Not reported | |
| SAMN03783246 | iran11 | Male | Iranian | Not reported | ||
| SAMEA2164410 | Genomic/Cell_Line | HGDP01079 | Male | Sardinian | Not reported | |
| SAMN03783257 | Genomic/Cell_Line | HGDP01078 | Female | Sardinian | Not reported | |
| SAMN03783242 | Genomic/Cell_Line | NA17374 | Male | Greek | Not reported | |
| SAMN00016981 | Genomic/Cell_Line | HG00190 | Male | FinlandFIN | Not reported | |
| SAMN03783248 | Genomic/Cell_Line | 1771 | Female | IraqiJew | Not reported | |
| SAMN03783230 | armenia293 | Male | Armenian | Not reported | ||
| SAMEA2164257 | Genomic/Cell_Line | HGDP00725 | Male | Palestinian | Not reported | |
| SAMEA2164189 | Genomic/Cell_Line | HGDP00530 | Male | French | Not reported | |
| SAMN00016967 | Genomic/Cell_Line | HG00174 | Female | FinlandFIN | Not reported | |
| SAMN00804084 | Genomic/Cell_Line | NA15728 | Male | Czechoslovakian | Not reported | |
| SAMN03783243 | Genomic/Cell_Line | NA17377 | Male | Greek | Not reported | |
| SAMN03783235 | BulgarianC1 | Male | Bulgarian | Not reported | ||
| SAMN03783241 | mg31 | Male | Georgian | Not reported | ||
| SAMN03783240 | Genomic/Cell_Line | HGDP00526 | Female | French | Not reported | |
| SAMN03783234 | BulgarianB4 | Male | Bulgarian | Not reported | ||
| SAMN03783231 | Genomic/Cell_Line | HGDP01365 | Female | Basque | Not reported | |
| SAMN00014363 | Genomic/Cell_Line | HG01504 | Female | SpainIBS | Not reported | |
| SAMN03783226 | abh100 | Male | Abkhasian | Not reported | ||
| SAMEA2164431 | Genomic/Cell_Line | HGDP01163 | Male | Tuscan | Not reported | |
| SAMEA2164296 | Genomic/Cell_Line | HGDP00798 | Male | Orcadian | Not reported | |
| SAMEA2164254 | Genomic/Cell_Line | HGDP00722 | Male | Palestinian | Not reported | |
| SAMN03783256 | Genomic/Cell_Line | HGDP00903 | Female | Russian | Not reported | |
| SAMN00804014 | Genomic/Cell_Line | NA15202 | Male | Hungarian | Not reported | |
| SAMN03783229 | altai363p | Male | Altaian | Not reported | ||
| SAMN00804016 | Genomic/Cell_Line | NA15203 | Female | Hungarian | Not reported | |
| SAMN03783239 | Est400 | Male | Estonian | Not reported | ||
| SAMN03783228 | Genomic/Cell_Line | HGDP01401 | Female | Adygei | Not reported | |
| SAMN03783247 | iran17 | Male | Iranian | Not reported | ||
| SAMEA2164571 | Genomic/Cell_Line | HGDP01364 | Male | Basque | Not reported | |
| SAMN03783238 | Est375 | Male | Estonian | Not reported | ||
| SAMN03783227 | abh107 | Male | Abkhasian | Not reported | ||
| SAMN00014362 | Genomic/Cell_Line | HG01503 | Male | SpainIBS | Not reported | |
| SAMN00006411 | Genomic/Cell_Line | HG00360 | Male | FinlandFIN | Not reported | |
| SAMEA2164211 | Genomic/Cell_Line | HGDP00616 | Male | Bedouin | Not reported | |
| SAMN03783245 | Genomic/Cell_Line | NA15763 | Female | Icelander | Not reported | |
| SAMN03783236 | ch113 | Male | Chechen | Not reported | ||
| SAMN03783252 | lez49 | Male | Lezgin | Not reported | ||
| SAMN03783254 | Genomic/Cell_Line | HGDP00796 | Female | Orcadian | Not reported | |
| SAMN03783249 | Genomic/Cell_Line | 4291 | Male | IraqiJew | Not reported | |
| SAMN03783253 | NOR111 | Female | Norwegian | Not reported | ||
| SAMN00798508 | Genomic/Cell_Line | ND15865 | Male | Polish | 87 Years | Not reported |
| SAMEA2164317 | Genomic/Cell_Line | HGDP00887 | Male | Russian | Not reported | |
| SAMN03783251 | lez42 | Male | Lezgin | Not reported | ||
| SAMN03783237 | Genomic/Cell_Line | HGDP00569 | Female | Druze | Not reported | |
| SAMN03783255 | Genomic/Cell_Line | HGDP00737 | Female | Palestinian | Not reported | |
| SAMEA2164427 | Genomic/Cell_Line | HGDP01153 | Male | Bergamo | Not reported | |
| SAMN03801619 | Utsa21 | Female | Saami | Not reported | ||
| SAMN03783250 | Jordan603 | Male | Jordanian | Not reported | ||
| SAMEA2164585 | Genomic/Cell_Line | HGDP01402 | Male | Adygei | Not reported | |
| SAMN03783232 | Genomic/Cell_Line | HGDP00650 | Female | Bedouin | Not reported | |
| SAMEA1706742 | Genomic/Cell_Line | HGDP01168 | Female | Tuscan | Not reported | |
| SAMEA2164206 | Genomic/Cell_Line | HGDP00597 | Male | Druze | Not reported | |
| SAMN03783259 | Genomic/Cell_Line | 5433 | Male | YemeniteJew | Not reported | |
| SAMN03783244 | Genomic/Cell_Line | NA15761 | Female | Icelander | Not reported | |
| SAMN03783233 | Genomic/Cell_Line | HGDP01172 | Female | Bergamo | Not reported |
- Sampleset ID:
- 8
- Name:
- Denisovan
- Description:
- Denisovan
- Size:
- 1
- Organisms:
- Homo sapiens subsp. 'Denisova'
- Sampleset Phenotype(s):
- None reported
- Sex:
- Female
| Sample ID | Subject ID | Sex | Population | Subject Phenotype |
|---|---|---|---|---|
| SAMEA1487354 | DNS | Female | Denisova | Not reported |
- Sampleset ID:
- 9
- Name:
- Neanderthal
- Description:
- Neanderthal
- Size:
- 1
- Organisms:
- Homo sapiens neanderthalensis
- Sampleset Phenotype(s):
- None reported
- Sex:
- Female
| Sample ID | Subject ID | Sex | Population | Subject Phenotype |
|---|---|---|---|---|
| SAMEA1706711 | NDL | Female | Neanderthal | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth | 3,303,297 |