nstd113 (Polyak et al. 2015)
- Organism:
- Human
- Study Type:
- Case-Set
- Submitter:
- Santhosh Girirajan
- Description:
- Copy Number Variant calls for 8,373 individuals (16,828 calls) with intellectual disability/developmental delay and/or autism from Signature Genomics Laboratories LLC. Please note that this study may contain samples in common with nstd54 and nstd100. Due to differences in the analysis please use samplesets from only one of these submissions. See Variant Summary counts for nstd113 in dbVar Variant Summary.
- Publication(s):
- Polyak et al. 2015
Detailed Information: Download 9010 Variant Regions, Download 16828 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 666 | 958 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 788 | 1,270 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 609 | 938 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 583 | 873 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 448 | 544 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 487 | 580 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 602 | 980 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 470 | 558 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 415 | 491 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 367 | 720 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 351 | 392 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 321 | 398 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 257 | 299 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 458 | 810 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 317 | 610 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 461 | 3,436 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 294 | 421 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 252 | 283 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 231 | 282 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 225 | 281 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 120 | 144 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 282 | 1,554 | Remapped | NC_000022.11 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 1 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 2 | 2 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 5 | 5 | Remapped | NT_187519.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 2 | 2 | Remapped | NW_003315905.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 6 | 9 | Remapped | NW_003315907.2 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 1 | Remapped | NW_014040925.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 5 | 5 | Remapped | NW_014040927.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 2 | Remapped | NW_018654708.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 3 | 3 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 4 | 4 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 3 | 5 | Remapped | NT_187527.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 5 | 6 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 1 | 1 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 3 | 3 | Remapped | NT_187647.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 2 | Remapped | NW_011332689.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 1 | 1 | Remapped | NW_018654709.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 2 | Remapped | NT_187678.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 2 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 2 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 2 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 2 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 3 | 3 | Remapped | NT_187534.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 1 | Remapped | NT_187536.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 1 | Remapped | NT_187538.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 2 | 3 | Remapped | NW_009646198.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 1 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 1 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 13 | 16 | Remapped | NT_187679.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 8 | 8 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 1 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 8 | 8 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 2 | Remapped | NW_003315915.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 1 | Remapped | NW_017363814.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 2 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 8 | 9 | Remapped | NT_187550.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 7 | 10 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 1 | 1 | Remapped | NW_018654712.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 11 | 16 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 5 | 5 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 14 | 20 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 7 | 8 | Remapped | NT_167245.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 3 | 4 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 1 | 1 | Remapped | NT_187554.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 1 | Remapped | NT_187557.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 4 | Remapped | NW_009646200.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 10 | 17 | Remapped | NT_187558.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 6 | 12 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 1 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 10 | 17 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 2 | 2 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 3 | 10 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 2 | 2 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 1 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 1 | 1 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 4 | 5 | Remapped | NT_187565.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 3 | 3 | Remapped | NT_187568.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 4 | 4 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 2 | 2 | Remapped | NT_187572.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 3 | 3 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 19 | 20 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 2 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 3 | 4 | Remapped | NT_187654.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 36 | 42 | Remapped | NW_018654717.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 6 | 6 | Remapped | NT_187581.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 1 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 1 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 2 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 5 | 21 | Remapped | NT_187587.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 8 | 9 | Remapped | NW_003571049.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 1 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 4 | 5 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 2 | 3 | Remapped | NT_187592.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 4 | 7 | Remapped | NW_011332698.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 1 | 1 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 3 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 15 | 18 | Remapped | NT_187600.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 27 | 87 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 9 | 105 | Remapped | NT_187603.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 28 | 88 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 24 | 46 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 1 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 1 | Remapped | NT_187610.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 2 | 2 | Remapped | NW_012132921.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 26 | 109 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 1 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 8 | 17 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 3 | 5 | Remapped | NT_187664.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 8 | 17 | Remapped | NT_167251.2 |
| NT_187612.1 | Chr17|NT_187612.1 | 3 | 3 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 13 | 15 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 13 | 45 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 1 | 1 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 3 | 3 | Remapped | NW_003315952.3 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 1 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 7 | 7 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 3 | 5 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 1 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 1 | 1 | Remapped | NW_019805501.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 1 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 3 | 3 | Remapped | NT_187617.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 2 | 4 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 2 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 3 | 4 | Remapped | NW_019805503.1 |
| NT_187636.1 | Chr19|NT_187636.1 | 1 | 2 | Remapped | NT_187636.1 |
| NT_187675.1 | Chr19|NT_187675.1 | 1 | 2 | Remapped | NT_187675.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 12 | 15 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 10 | 11 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 4 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 4 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 5 | 5 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 10 | 13 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 4 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 8 | 8 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 13 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 12 | 15 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 1 | 1 | Remapped | NW_014040929.1 |
| NW_016107303.1 | Chr19|NW_016107303.1 | 1 | 2 | Remapped | NW_016107303.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 2 | 2 | Remapped | NT_187624.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 1 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 20 | 33 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 3 | 3 | Remapped | NT_187633.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 666 | 958 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 787 | 1,269 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 607 | 935 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 583 | 873 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 448 | 544 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 491 | 585 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 600 | 978 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 471 | 559 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 414 | 490 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 367 | 720 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 352 | 393 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 313 | 389 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 259 | 301 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 458 | 810 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 317 | 610 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 461 | 3,436 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 288 | 415 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 252 | 283 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 227 | 277 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 225 | 281 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 120 | 144 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 282 | 1,554 | Remapped | NC_000022.10 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 2 | 2 | Remapped | NW_003315905.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 6 | 9 | Remapped | NW_003315907.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 31 | 103 | Remapped | NW_003871055.3 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 1 | 1 | Remapped | NW_004504299.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 2 | Remapped | NW_003315915.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 1 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 12 | 12 | Remapped | NW_004775427.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 7 | 8 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 17 | 24 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 5 | 5 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 14 | 20 | Remapped | NT_167249.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 6 | 12 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 27 | 88 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 3 | 8 | Remapped | NW_003871065.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 2 | 2 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 17 | 18 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 4 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 2 | 2 | Remapped | NW_004070868.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 1 | 1 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 1 | 1 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 7 | 12 | Remapped | NW_003871071.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 1 | 1 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 1 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 1 | 1 | Remapped | NW_003871078.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 2 | 2 | Remapped | NW_003315937.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 8 | 9 | Remapped | NW_003571048.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 15 | 17 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 1 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 1 | 1 | Remapped | NW_003871084.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 8 | 17 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 2 | 4 | Remapped | NW_003315949.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 1 | 1 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 3 | 3 | Remapped | NW_004070872.2 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 2 | 4 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 2 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 13 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 7 | 7 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 5 | 6 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 1 | 1 | Remapped | NW_004775434.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 1 | 1 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 2 | 2 | Remapped | NW_004775435.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 666 | 958 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 787 | 1,269 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 607 | 935 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 584 | 874 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 448 | 544 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 491 | 585 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 602 | 980 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 471 | 559 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 416 | 492 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 367 | 720 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 352 | 393 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 321 | 398 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 259 | 301 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 458 | 810 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 317 | 610 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 461 | 3,436 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 293 | 420 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 252 | 283 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 231 | 282 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 225 | 281 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 120 | 144 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 282 | 1,554 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 666 | 567 | 41 | 19 | 0 | 39 | 958 | 759 | 41 | 44 | 0 | 114 |
| NC_000002.10 | Chr2 | 787 | 714 | 68 | 4 | 0 | 1 | 1,269 | 1,190 | 73 | 5 | 0 | 1 |
| NC_000003.10 | Chr3 | 607 | 591 | 13 | 3 | 0 | 0 | 935 | 917 | 15 | 3 | 0 | 0 |
| NC_000004.10 | Chr4 | 584 | 500 | 57 | 11 | 1 | 15 | 874 | 788 | 58 | 12 | 1 | 15 |
| NC_000005.8 | Chr5 | 448 | 430 | 17 | 0 | 0 | 1 | 544 | 524 | 19 | 0 | 0 | 1 |
| NC_000006.10 | Chr6 | 491 | 426 | 41 | 7 | 0 | 17 | 585 | 510 | 43 | 8 | 0 | 24 |
| NC_000007.12 | Chr7 | 602 | 531 | 22 | 15 | 0 | 34 | 980 | 837 | 22 | 15 | 0 | 106 |
| NC_000008.9 | Chr8 | 471 | 390 | 50 | 11 | 0 | 20 | 559 | 462 | 63 | 13 | 0 | 21 |
| NC_000009.10 | Chr9 | 416 | 381 | 24 | 5 | 2 | 4 | 492 | 453 | 25 | 5 | 2 | 7 |
| NC_000010.9 | Chr10 | 367 | 307 | 36 | 13 | 0 | 11 | 720 | 386 | 38 | 280 | 0 | 16 |
| NC_000011.8 | Chr11 | 352 | 338 | 9 | 1 | 0 | 4 | 393 | 379 | 9 | 1 | 0 | 4 |
| NC_000012.10 | Chr12 | 321 | 275 | 24 | 19 | 0 | 3 | 398 | 352 | 24 | 19 | 0 | 3 |
| NC_000013.9 | Chr13 | 259 | 246 | 9 | 4 | 0 | 0 | 301 | 287 | 10 | 4 | 0 | 0 |
| NC_000014.7 | Chr14 | 458 | 425 | 16 | 2 | 0 | 15 | 810 | 775 | 16 | 2 | 0 | 17 |
| NC_000015.8 | Chr15 | 317 | 264 | 45 | 6 | 0 | 2 | 610 | 407 | 193 | 8 | 0 | 2 |
| NC_000016.8 | Chr16 | 461 | 441 | 17 | 3 | 0 | 0 | 3,436 | 3,409 | 18 | 9 | 0 | 0 |
| NC_000017.9 | Chr17 | 293 | 214 | 46 | 20 | 2 | 11 | 420 | 290 | 74 | 32 | 2 | 22 |
| NC_000018.8 | Chr18 | 252 | 206 | 40 | 2 | 0 | 4 | 283 | 233 | 41 | 2 | 0 | 7 |
| NC_000019.8 | Chr19 | 231 | 205 | 5 | 8 | 0 | 13 | 282 | 244 | 5 | 9 | 0 | 24 |
| NC_000020.9 | Chr20 | 225 | 216 | 5 | 4 | 0 | 0 | 281 | 272 | 5 | 4 | 0 | 0 |
| NC_000021.7 | Chr21 | 120 | 107 | 7 | 2 | 0 | 4 | 144 | 131 | 7 | 2 | 0 | 4 |
| NC_000022.9 | Chr22 | 282 | 215 | 64 | 3 | 0 | 0 | 1,554 | 1,393 | 158 | 3 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 666 | 481 | 137 | 21 | 1 | 26 | 958 | 628 | 213 | 86 | 1 | 30 |
| NC_000002.10 | Chr2 | 787 | 657 | 103 | 7 | 0 | 20 | 1,269 | 1,127 | 108 | 10 | 0 | 24 |
| NC_000003.10 | Chr3 | 607 | 555 | 42 | 1 | 0 | 9 | 935 | 871 | 53 | 1 | 0 | 10 |
| NC_000004.10 | Chr4 | 584 | 496 | 60 | 10 | 1 | 17 | 874 | 782 | 61 | 10 | 1 | 20 |
| NC_000005.8 | Chr5 | 448 | 405 | 23 | 0 | 0 | 20 | 544 | 495 | 25 | 0 | 0 | 24 |
| NC_000006.10 | Chr6 | 491 | 379 | 74 | 8 | 2 | 28 | 585 | 459 | 75 | 10 | 2 | 39 |
| NC_000007.12 | Chr7 | 602 | 501 | 62 | 13 | 0 | 26 | 980 | 782 | 139 | 13 | 0 | 46 |
| NC_000008.9 | Chr8 | 471 | 326 | 63 | 7 | 0 | 75 | 559 | 392 | 75 | 9 | 0 | 83 |
| NC_000009.10 | Chr9 | 416 | 387 | 24 | 1 | 2 | 2 | 492 | 462 | 25 | 1 | 2 | 2 |
| NC_000010.9 | Chr10 | 367 | 304 | 53 | 10 | 0 | 0 | 720 | 380 | 324 | 16 | 0 | 0 |
| NC_000011.8 | Chr11 | 352 | 305 | 36 | 0 | 1 | 10 | 393 | 344 | 38 | 0 | 1 | 10 |
| NC_000012.10 | Chr12 | 321 | 268 | 21 | 10 | 0 | 22 | 398 | 326 | 22 | 10 | 0 | 40 |
| NC_000013.9 | Chr13 | 259 | 233 | 11 | 7 | 2 | 6 | 301 | 270 | 12 | 7 | 2 | 10 |
| NC_000014.7 | Chr14 | 458 | 206 | 225 | 9 | 0 | 18 | 810 | 260 | 518 | 10 | 0 | 22 |
| NC_000015.8 | Chr15 | 317 | 224 | 38 | 17 | 0 | 38 | 610 | 303 | 69 | 44 | 0 | 194 |
| NC_000016.8 | Chr16 | 461 | 379 | 24 | 3 | 0 | 55 | 3,436 | 3,242 | 25 | 9 | 0 | 160 |
| NC_000017.9 | Chr17 | 293 | 170 | 68 | 2 | 0 | 53 | 420 | 216 | 104 | 2 | 0 | 98 |
| NC_000018.8 | Chr18 | 252 | 191 | 48 | 2 | 0 | 11 | 283 | 217 | 49 | 2 | 0 | 15 |
| NC_000019.8 | Chr19 | 231 | 183 | 25 | 4 | 0 | 19 | 282 | 217 | 27 | 4 | 0 | 34 |
| NC_000020.9 | Chr20 | 225 | 193 | 28 | 2 | 0 | 2 | 281 | 247 | 30 | 2 | 0 | 2 |
| NC_000021.7 | Chr21 | 120 | 81 | 36 | 0 | 0 | 3 | 144 | 100 | 41 | 0 | 0 | 3 |
| NC_000022.9 | Chr22 | 282 | 87 | 151 | 19 | 0 | 25 | 1,554 | 162 | 1,245 | 109 | 0 | 38 |
Samplesets
Number of Samplesets: 1
- Size:
- 8,373
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|
| 1018 | 1018 | Female | Not reported |
| 1053 | 1053 | Female | Not reported |
| 1055 | 1055 | Female | Not reported |
| 10103 | 10103 | Male | Not reported |
| 10151 | 10151 | Female | Not reported |
| 10215 | 10215 | Female | Not reported |
| 10308 | 10308 | Female | Not reported |
| 10346 | 10346 | Female | Not reported |
| 10350 | 10350 | Female | Not reported |
| 10354 | 10354 | Male | Not reported |
| 10370 | 10370 | Male | Not reported |
| 10372 | 10372 | Male | Not reported |
| 10383 | 10383 | Male | Not reported |
| 10401 | 10401 | Female | Not reported |
| 10420 | 10420 | Female | Not reported |
| 10448 | 10448 | Male | Not reported |
| 10463 | 10463 | Male | Not reported |
| 10464 | 10464 | Male | Not reported |
| 10489 | 10489 | Male | Not reported |
| 10490 | 10490 | Male | Not reported |
| 10502 | 10502 | Male | Not reported |
| 10572 | 10572 | Male | Not reported |
| 10579 | 10579 | Male | Not reported |
| 10605 | 10605 | Female | Not reported |
| 10606 | 10606 | Male | Not reported |
| 10607 | 10607 | Male | Not reported |
| 10609 | 10609 | Male | Not reported |
| 10631 | 10631 | Male | Not reported |
| 10639 | 10639 | Male | Not reported |
| 10648 | 10648 | Male | Not reported |
| 10662 | 10662 | Female | Not reported |
| 10671 | 10671 | Female | Not reported |
| 10679 | 10679 | Female | Not reported |
| 10680 | 10680 | Male | Not reported |
| 10682 | 10682 | Male | Not reported |
| 10683 | 10683 | Female | Not reported |
| 10684 | 10684 | Female | Not reported |
| 10691 | 10691 | Male | Not reported |
| 10693 | 10693 | Female | Not reported |
| 10698 | 10698 | Male | Not reported |
| 10725 | 10725 | Male | Not reported |
| 10792 | 10792 | Male | Not reported |
| 10794 | 10794 | Male | Not reported |
| 10798 | 10798 | Male | Not reported |
| 10801 | 10801 | Female | Not reported |
| 10903 | 10903 | Male | Not reported |
| 10912 | 10912 | Male | Not reported |
| 10925 | 10925 | Male | Not reported |
| 10997 | 10997 | Male | Not reported |
| 11001 | 11001 | Female | Not reported |
| 11009 | 11009 | Male | Not reported |
| 11034 | 11034 | Male | Not reported |
| 11036 | 11036 | Female | Not reported |
| 11039 | 11039 | Male | Not reported |
| 11040 | 11040 | Male | Not reported |
| 11042 | 11042 | Female | Not reported |
| 11043 | 11043 | Male | Not reported |
| 11047 | 11047 | Female | Not reported |
| 11051 | 11051 | Male | Not reported |
| 11060 | 11060 | Female | Not reported |
| 11066 | 11066 | Male | Not reported |
| 11068 | 11068 | Female | Not reported |
| 11079 | 11079 | Male | Not reported |
| 11091 | 11091 | Male | Not reported |
| 11098 | 11098 | Male | Not reported |
| 11104 | 11104 | Male | Not reported |
| 11116 | 11116 | Female | Not reported |
| 11119 | 11119 | Female | Not reported |
| 11122 | 11122 | Male | Not reported |
| 11141 | 11141 | Female | Not reported |
| 11144 | 11144 | Female | Not reported |
| 11164 | 11164 | Male | Not reported |
| 11167 | 11167 | Female | Not reported |
| 11168 | 11168 | Male | Not reported |
| 11178 | 11178 | Female | Not reported |
| 11197 | 11197 | Male | Not reported |
| 11202 | 11202 | Male | Not reported |
| 11205 | 11205 | Male | Not reported |
| 11213 | 11213 | Female | Not reported |
| 11231 | 11231 | Male | Not reported |
| 11237 | 11237 | Female | Not reported |
| 11249 | 11249 | Female | Not reported |
| 11250 | 11250 | Female | Not reported |
| 11251 | 11251 | Female | Not reported |
| 11264 | 11264 | Female | Not reported |
| 11289 | 11289 | Male | Not reported |
| 11300 | 11300 | Female | Not reported |
| 11309 | 11309 | Male | Not reported |
| 11328 | 11328 | Female | Not reported |
| 11347 | 11347 | Male | Not reported |
| 11348 | 11348 | Male | Not reported |
| 11351 | 11351 | Male | Not reported |
| 11355 | 11355 | Male | Not reported |
| 11362 | 11362 | Male | Not reported |
| 11369 | 11369 | Male | Not reported |
| 11370 | 11370 | Male | Not reported |
| 11372 | 11372 | Male | Not reported |
| 11376 | 11376 | Female | Not reported |
| 11384 | 11384 | Male | Not reported |
| 11385 | 11385 | Female | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | SignatureChip OS | 16,828 |