nstd118 (Polley et al. 2015)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Ed Hollox
- Description:
- We characterised copy number variation at the DMBT1 gene, which encodes a large glycoprotein known as salivary agglutinin, gp340, muclin or hensin. DMBT1 has a complex copy number variable structure, with two, independent, rapidly mutating copy number variable regions, called CNV1 and CNV2. We analysed the distribution across populations, calculated its mutation rate from analysing pedigrees. We provide evidence suggesting that CNV has been shaped by selection, in particular ability to bind both Streptococcus mutans and hydroxyapatite on the tooth surface. See Variant Summary counts for nstd118 in dbVar Variant Summary.
- Publication(s):
- Polley et al. 2015
Detailed Information: Download 2 Variant Regions, Download 3917 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
---|---|---|---|---|---|
NC_000010.11 | Chr10 | 2 | 3,917 | Remapped | NC_000010.11 |
Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
---|---|---|---|---|---|
NC_000010.10 | Chr10 | 2 | 3,917 | Submitted | NC_000010.10 |
Variant Region remap status | Variant Call remap status | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
NC_000010.10 | Chr10 | 2 | 2 | 0 | 0 | 0 | 0 | 3,917 | 3,917 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 5
- Sampleset ID:
- 1
- Name:
- HapMap_sample
- Sampleset Type:
- Control
- Description:
- HapMap phase I samples from different populations
- Size:
- 269
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Control
Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
---|---|---|---|---|---|
NA12812 | Lymphoblastoid cell lines | NA12812 | Male | European | Control |
NA07348 | Lymphoblastoid cell lines | NA07348 | Female | European | Control |
NA18502 | Lymphoblastoid cell lines | NA18502 | Female | Yoruba of Ibadan, Nigeria | Control |
NA11993 | Lymphoblastoid cell lines | NA11993 | Female | European | Control |
NA12813 | Lymphoblastoid cell lines | NA12813 | Female | European | Control |
NA12761 | Lymphoblastoid cell lines | NA12761 | Female | European | Control |
NA12154 | Lymphoblastoid cell lines | NA12154 | Male | European | Control |
NA12057 | Lymphoblastoid cell lines | NA12057 | Female | European | Control |
NA10857 | Lymphoblastoid cell lines | NA10857 | Male | European | Control |
NA11839 | Lymphoblastoid cell lines | NA11839 | Male | European | Control |
NA12156 | Lymphoblastoid cell lines | NA12156 | Female | European | Control |
NA11881 | Lymphoblastoid cell lines | NA11881 | Male | European | Control |
NA11831 | Lymphoblastoid cell lines | NA11831 | Male | European | Control |
NA06993 | Lymphoblastoid cell lines | NA06993 | Male | European | Control |
NA10830 | Lymphoblastoid cell lines | NA10830 | Male | European | Control |
NA10856 | Lymphoblastoid cell lines | NA10856 | Male | European | Control |
NA07048 | Lymphoblastoid cell lines | NA07048 | Male | European | Control |
NA12056 | Lymphoblastoid cell lines | NA12056 | Male | European | Control |
NA12236 | Lymphoblastoid cell lines | NA12236 | Female | European | Control |
NA12751 | Lymphoblastoid cell lines | NA12751 | Female | European | Control |
NA12155 | Lymphoblastoid cell lines | NA12155 | Male | European | Control |
NA12146 | Lymphoblastoid cell lines | NA12146 | Male | European | Control |
NA12872 | Lymphoblastoid cell lines | NA12872 | Male | European | Control |
NA12865 | Lymphoblastoid cell lines | NA12865 | Female | European | Control |
NA12249 | Lymphoblastoid cell lines | NA12249 | Female | European | Control |
NA11830 | Lymphoblastoid cell lines | NA11830 | Female | European | Control |
NA12892 | Lymphoblastoid cell lines | NA12892 | Female | European | Control |
NA12716 | Lymphoblastoid cell lines | NA12716 | Male | European | Control |
NA10859 | Lymphoblastoid cell lines | NA10859 | Female | European | Control |
NA10838 | Lymphoblastoid cell lines | NA10838 | Male | European | Control |
NA06991 | Lymphoblastoid cell lines | NA06991 | Female | European | Control |
NA12760 | Lymphoblastoid cell lines | NA12760 | Male | European | Control |
NA12763 | Lymphoblastoid cell lines | NA12763 | Female | European | Control |
NA11995 | Lymphoblastoid cell lines | NA11995 | Female | European | Control |
NA10831 | Lymphoblastoid cell lines | NA10831 | Female | European | Control |
NA11829 | Lymphoblastoid cell lines | NA11829 | Male | European | Control |
NA11992 | Lymphoblastoid cell lines | NA11992 | Male | European | Control |
NA12815 | Lymphoblastoid cell lines | NA12815 | Female | European | Control |
NA12043 | Lymphoblastoid cell lines | NA12043 | Male | European | Control |
NA12003 | Lymphoblastoid cell lines | NA12003 | Male | European | Control |
NA18501 | Lymphoblastoid cell lines | NA18501 | Male | Yoruba of Ibadan, Nigeria | Control |
NA07022 | Lymphoblastoid cell lines | NA07022 | Male | European | Control |
NA10860 | Lymphoblastoid cell lines | NA10860 | Male | European | Control |
NA06985 | Lymphoblastoid cell lines | NA06985 | Female | European | Control |
NA18508 | Lymphoblastoid cell lines | NA18508 | Female | Yoruba of Ibadan, Nigeria | Control |
NA18505 | Lymphoblastoid cell lines | NA18505 | Female | Yoruba of Ibadan, Nigeria | Control |
NA12044 | Lymphoblastoid cell lines | NA12044 | Female | European | Control |
NA18500 | Lymphoblastoid cell lines | NA18500 | Male | Yoruba of Ibadan, Nigeria | Control |
NA12234 | Lymphoblastoid cell lines | NA12234 | Female | European | Control |
NA12264 | Lymphoblastoid cell lines | NA12264 | Male | European | Control |
NA12874 | Lymphoblastoid cell lines | NA12874 | Male | European | Control |
NA10851 | Lymphoblastoid cell lines | NA10851 | Male | European | Control |
NA12145 | Lymphoblastoid cell lines | NA12145 | Female | European | Control |
NA12752 | Lymphoblastoid cell lines | NA12752 | Male | European | Control |
NA07029 | Lymphoblastoid cell lines | NA07029 | Male | European | Control |
NA12004 | Lymphoblastoid cell lines | NA12004 | Female | European | Control |
NA07357 | Lymphoblastoid cell lines | NA07357 | Male | European | Control |
NA06994 | Lymphoblastoid cell lines | NA06994 | Male | European | Control |
NA12878 | Lymphoblastoid cell lines | NA12878 | Female | European | Control |
NA11840 | Lymphoblastoid cell lines | NA11840 | Female | European | Control |
NA12864 | Lymphoblastoid cell lines | NA12864 | Male | European | Control |
NA18506 | Lymphoblastoid cell lines | NA18506 | Male | Yoruba of Ibadan, Nigeria | Control |
NA07034 | Lymphoblastoid cell lines | NA07034 | Male | European | Control |
NA12753 | Lymphoblastoid cell lines | NA12753 | Female | European | Control |
NA11994 | Lymphoblastoid cell lines | NA11994 | Male | European | Control |
NA12248 | Lymphoblastoid cell lines | NA12248 | Male | European | Control |
NA12005 | Lymphoblastoid cell lines | NA12005 | Male | European | Control |
NA07345 | Lymphoblastoid cell lines | NA07345 | Female | European | Control |
NA10847 | Lymphoblastoid cell lines | NA10847 | Female | European | Control |
NA10839 | Lymphoblastoid cell lines | NA10839 | Female | European | Control |
NA12762 | Lymphoblastoid cell lines | NA12762 | Male | European | Control |
NA12006 | Lymphoblastoid cell lines | NA12006 | Female | European | Control |
NA12144 | Lymphoblastoid cell lines | NA12144 | Male | European | Control |
NA12891 | Lymphoblastoid cell lines | NA12891 | Male | European | Control |
NA12814 | Lymphoblastoid cell lines | NA12814 | Male | European | Control |
NA12801 | Lymphoblastoid cell lines | NA12801 | Male | European | Control |
NA07055 | Lymphoblastoid cell lines | NA07055 | Female | European | Control |
NA10863 | Lymphoblastoid cell lines | NA10863 | Female | European | Control |
NA10855 | Lymphoblastoid cell lines | NA10855 | Female | European | Control |
NA10854 | Lymphoblastoid cell lines | NA10854 | Female | European | Control |
NA11882 | Lymphoblastoid cell lines | NA11882 | Female | European | Control |
NA07019 | Lymphoblastoid cell lines | NA07019 | Female | European | Control |
NA12717 | Lymphoblastoid cell lines | NA12717 | Female | European | Control |
NA12707 | Lymphoblastoid cell lines | NA12707 | Male | European | Control |
NA10835 | Lymphoblastoid cell lines | NA10835 | Male | European | Control |
NA12873 | Lymphoblastoid cell lines | NA12873 | Female | European | Control |
NA18503 | Lymphoblastoid cell lines | NA18503 | Male | Yoruba of Ibadan, Nigeria | Control |
NA18507 | Lymphoblastoid cell lines | NA18507 | Male | Yoruba of Ibadan, Nigeria | Control |
NA07056 | Lymphoblastoid cell lines | NA07056 | Female | European | Control |
NA12875 | Lymphoblastoid cell lines | NA12875 | Female | European | Control |
NA10861 | Lymphoblastoid cell lines | NA10861 | Female | European | Control |
NA10846 | Lymphoblastoid cell lines | NA10846 | Male | European | Control |
NA12750 | Lymphoblastoid cell lines | NA12750 | Male | European | Control |
NA12802 | Lymphoblastoid cell lines | NA12802 | Female | European | Control |
NA07000 | Lymphoblastoid cell lines | NA07000 | Female | European | Control |
NA12740 | Lymphoblastoid cell lines | NA12740 | Female | European | Control |
NA11832 | Lymphoblastoid cell lines | NA11832 | Female | European | Control |
NA12239 | Lymphoblastoid cell lines | NA12239 | Female | European | Control |
NA18504 | Lymphoblastoid cell lines | NA18504 | Male | Yoruba of Ibadan, Nigeria | Control |
NA18515 | Lymphoblastoid cell lines | NA18515 | Male | Yoruba of Ibadan, Nigeria | Control |
- Sampleset ID:
- 2
- Name:
- HGDP_sample
- Sampleset Type:
- Control
- Size:
- 971
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Control
Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
---|---|---|---|---|---|
HGDP00080 | Lymphoblastoid cell lines | HGDP00080 | Male | Balochi | Control |
HGDP00074 | Lymphoblastoid cell lines | HGDP00074 | Male | Balochi | Control |
HGDP00108 | Lymphoblastoid cell lines | HGDP00108 | Male | Hazara | Control |
HGDP00144 | Lymphoblastoid cell lines | HGDP00144 | Male | Makrani | Control |
HGDP00064 | Lymphoblastoid cell lines | HGDP00064 | Male | Balochi | Control |
HGDP00146 | Lymphoblastoid cell lines | HGDP00146 | Male | Makrani | Control |
HGDP00099 | Lymphoblastoid cell lines | HGDP00099 | Male | Hazara | Control |
HGDP00160 | Lymphoblastoid cell lines | HGDP00160 | Male | Makrani | Control |
HGDP00157 | Lymphoblastoid cell lines | HGDP00157 | Female | Makrani | Control |
HGDP00027 | Lymphoblastoid cell lines | HGDP00027 | Male | Brahui | Control |
HGDP00031 | Lymphoblastoid cell lines | HGDP00031 | Male | Brahui | Control |
HGDP00092 | Lymphoblastoid cell lines | HGDP00092 | Male | Balochi | Control |
HGDP00019 | Lymphoblastoid cell lines | HGDP00019 | Male | Brahui | Control |
HGDP00124 | Lymphoblastoid cell lines | HGDP00124 | Male | Hazara | Control |
HGDP00021 | Lymphoblastoid cell lines | HGDP00021 | Male | Brahui | Control |
HGDP00158 | Lymphoblastoid cell lines | HGDP00158 | Male | Makrani | Control |
HGDP00135 | Lymphoblastoid cell lines | HGDP00135 | Male | Makrani | Control |
HGDP00125 | Lymphoblastoid cell lines | HGDP00125 | Male | Hazara | Control |
HGDP00005 | Lymphoblastoid cell lines | HGDP00005 | Male | Brahui | Control |
HGDP00054 | Lymphoblastoid cell lines | HGDP00054 | Male | Balochi | Control |
HGDP00049 | Lymphoblastoid cell lines | HGDP00049 | Male | Brahui | Control |
HGDP00116 | Lymphoblastoid cell lines | HGDP00116 | Male | Hazara | Control |
HGDP00052 | Lymphoblastoid cell lines | HGDP00052 | Male | Balochi | Control |
HGDP00167 | Lymphoblastoid cell lines | HGDP00167 | Male | Sindhi | Control |
HGDP00131 | Lymphoblastoid cell lines | HGDP00131 | Male | Makrani | Control |
HGDP00119 | Lymphoblastoid cell lines | HGDP00119 | Male | Hazara | Control |
HGDP00082 | Lymphoblastoid cell lines | HGDP00082 | Male | Balochi | Control |
HGDP00161 | Lymphoblastoid cell lines | HGDP00161 | Male | Makrani | Control |
HGDP00029 | Lymphoblastoid cell lines | HGDP00029 | Male | Brahui | Control |
HGDP00127 | Lymphoblastoid cell lines | HGDP00127 | Male | Hazara | Control |
HGDP00009 | Lymphoblastoid cell lines | HGDP00009 | Male | Brahui | Control |
HGDP00110 | Lymphoblastoid cell lines | HGDP00110 | Male | Hazara | Control |
HGDP00045 | Lymphoblastoid cell lines | HGDP00045 | Male | Brahui | Control |
HGDP00106 | Lymphoblastoid cell lines | HGDP00106 | Male | Hazara | Control |
HGDP00122 | Lymphoblastoid cell lines | HGDP00122 | Male | Hazara | Control |
HGDP00150 | Lymphoblastoid cell lines | HGDP00150 | Male | Makrani | Control |
HGDP00121 | Lymphoblastoid cell lines | HGDP00121 | Male | Hazara | Control |
HGDP00115 | Lymphoblastoid cell lines | HGDP00115 | Male | Hazara | Control |
HGDP00118 | Lymphoblastoid cell lines | HGDP00118 | Male | Hazara | Control |
HGDP00070 | Lymphoblastoid cell lines | HGDP00070 | Male | Balochi | Control |
HGDP00139 | Lymphoblastoid cell lines | HGDP00139 | Male | Makrani | Control |
HGDP00041 | Lymphoblastoid cell lines | HGDP00041 | Male | Brahui | Control |
HGDP00151 | Lymphoblastoid cell lines | HGDP00151 | Female | Makrani | Control |
HGDP00011 | Lymphoblastoid cell lines | HGDP00011 | Male | Brahui | Control |
HGDP00128 | Lymphoblastoid cell lines | HGDP00128 | Male | Hazara | Control |
HGDP00086 | Lymphoblastoid cell lines | HGDP00086 | Male | Balochi | Control |
HGDP00102 | Lymphoblastoid cell lines | HGDP00102 | Male | Hazara | Control |
HGDP00003 | Lymphoblastoid cell lines | HGDP00003 | Male | Brahui | Control |
HGDP00163 | Lymphoblastoid cell lines | HGDP00163 | Male | Sindhi | Control |
HGDP00141 | Lymphoblastoid cell lines | HGDP00141 | Male | Makrani | Control |
HGDP00076 | Lymphoblastoid cell lines | HGDP00076 | Male | Balochi | Control |
HGDP00154 | Lymphoblastoid cell lines | HGDP00154 | Female | Makrani | Control |
HGDP00148 | Lymphoblastoid cell lines | HGDP00148 | Male | Makrani | Control |
HGDP00047 | Lymphoblastoid cell lines | HGDP00047 | Male | Brahui | Control |
HGDP00001 | Lymphoblastoid cell lines | HGDP00001 | Male | Brahui | Control |
HGDP00165 | Lymphoblastoid cell lines | HGDP00165 | Male | Sindhi | Control |
HGDP00134 | Lymphoblastoid cell lines | HGDP00134 | Male | Makrani | Control |
HGDP00133 | Lymphoblastoid cell lines | HGDP00133 | Male | Makrani | Control |
HGDP00155 | Lymphoblastoid cell lines | HGDP00155 | Female | Makrani | Control |
HGDP00025 | Lymphoblastoid cell lines | HGDP00025 | Male | Brahui | Control |
HGDP00120 | Lymphoblastoid cell lines | HGDP00120 | Male | Hazara | Control |
HGDP00090 | Lymphoblastoid cell lines | HGDP00090 | Male | Balochi | Control |
HGDP00058 | Lymphoblastoid cell lines | HGDP00058 | Male | Balochi | Control |
HGDP00066 | Lymphoblastoid cell lines | HGDP00066 | Male | Balochi | Control |
HGDP00137 | Lymphoblastoid cell lines | HGDP00137 | Male | Makrani | Control |
HGDP00105 | Lymphoblastoid cell lines | HGDP00105 | Male | Hazara | Control |
HGDP00057 | Lymphoblastoid cell lines | HGDP00057 | Male | Balochi | Control |
HGDP00094 | Lymphoblastoid cell lines | HGDP00094 | Male | Balochi | Control |
HGDP00068 | Lymphoblastoid cell lines | HGDP00068 | Male | Balochi | Control |
HGDP00129 | Lymphoblastoid cell lines | HGDP00129 | Male | Hazara | Control |
HGDP00007 | Lymphoblastoid cell lines | HGDP00007 | Male | Brahui | Control |
HGDP00098 | Lymphoblastoid cell lines | HGDP00098 | Male | Balochi | Control |
HGDP00109 | Lymphoblastoid cell lines | HGDP00109 | Male | Hazara | Control |
HGDP00078 | Lymphoblastoid cell lines | HGDP00078 | Male | Balochi | Control |
HGDP00039 | Lymphoblastoid cell lines | HGDP00039 | Male | Brahui | Control |
HGDP00143 | Lymphoblastoid cell lines | HGDP00143 | Male | Makrani | Control |
HGDP00130 | Lymphoblastoid cell lines | HGDP00130 | Male | Makrani | Control |
HGDP00140 | Lymphoblastoid cell lines | HGDP00140 | Male | Makrani | Control |
HGDP00023 | Lymphoblastoid cell lines | HGDP00023 | Male | Brahui | Control |
HGDP00062 | Lymphoblastoid cell lines | HGDP00062 | Male | Balochi | Control |
HGDP00056 | Lymphoblastoid cell lines | HGDP00056 | Male | Balochi | Control |
HGDP00100 | Lymphoblastoid cell lines | HGDP00100 | Male | Hazara | Control |
HGDP00136 | Lymphoblastoid cell lines | HGDP00136 | Male | Makrani | Control |
HGDP00088 | Lymphoblastoid cell lines | HGDP00088 | Male | Balochi | Control |
HGDP00033 | Lymphoblastoid cell lines | HGDP00033 | Male | Brahui | Control |
HGDP00017 | Lymphoblastoid cell lines | HGDP00017 | Male | Brahui | Control |
HGDP00096 | Lymphoblastoid cell lines | HGDP00096 | Male | Balochi | Control |
HGDP00035 | Lymphoblastoid cell lines | HGDP00035 | Male | Brahui | Control |
HGDP00060 | Lymphoblastoid cell lines | HGDP00060 | Male | Balochi | Control |
HGDP00149 | Lymphoblastoid cell lines | HGDP00149 | Male | Makrani | Control |
HGDP00112 | Lymphoblastoid cell lines | HGDP00112 | Male | Hazara | Control |
HGDP00103 | Lymphoblastoid cell lines | HGDP00103 | Male | Hazara | Control |
HGDP00104 | Lymphoblastoid cell lines | HGDP00104 | Male | Hazara | Control |
HGDP00072 | Lymphoblastoid cell lines | HGDP00072 | Male | Balochi | Control |
HGDP00037 | Lymphoblastoid cell lines | HGDP00037 | Male | Brahui | Control |
HGDP00153 | Lymphoblastoid cell lines | HGDP00153 | Female | Makrani | Control |
HGDP00013 | Lymphoblastoid cell lines | HGDP00013 | Male | Brahui | Control |
HGDP00145 | Lymphoblastoid cell lines | HGDP00145 | Male | Makrani | Control |
HGDP00015 | Lymphoblastoid cell lines | HGDP00015 | Male | Brahui | Control |
HGDP00043 | Lymphoblastoid cell lines | HGDP00043 | Male | Brahui | Control |
- Sampleset ID:
- 3
- Name:
- CEPH families
- Sampleset Type:
- Control
- Size:
- 459
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Control
Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
---|---|---|---|---|---|
NA07039 | Lymphoblastoid cell lines | NA07039 | Male | European | Control |
NA06999 | Lymphoblastoid cell lines | NA06999 | Female | European | Control |
NA06990 | Lymphoblastoid cell lines | NA06990 | Female | European | Control |
NA07694 | Lymphoblastoid cell lines | NA07694 | Female | European | Control |
NA10836 | Lymphoblastoid cell lines | NA10836 | Female | European | Control |
NA07013 | Lymphoblastoid cell lines | NA07013 | Male | European | Control |
NA07003 | Lymphoblastoid cell lines | NA07003 | Female | European | Control |
NA07437 | Lymphoblastoid cell lines | NA07437 | Female | European | Control |
NA07009 | Lymphoblastoid cell lines | NA07009 | Male | European | Control |
NA07432 | Lymphoblastoid cell lines | NA07432 | Male | European | Control |
NA07042 | Lymphoblastoid cell lines | NA07042 | Male | European | Control |
NA07016 | Lymphoblastoid cell lines | NA07016 | Male | European | Control |
NA07005 | Lymphoblastoid cell lines | NA07005 | Female | European | Control |
NA07341 | Lymphoblastoid cell lines | NA07341 | Female | European | Control |
NA06981 | Lymphoblastoid cell lines | NA06981 | Female | European | Control |
NA07030 | Lymphoblastoid cell lines | NA07030 | Male | European | Control |
NA07007 | Lymphoblastoid cell lines | NA07007 | Male | European | Control |
NA07343 | Lymphoblastoid cell lines | NA07343 | Female | European | Control |
NA07014 | Lymphoblastoid cell lines | NA07014 | Female | European | Control |
NA10840 | Lymphoblastoid cell lines | NA10840 | Female | European | Control |
NA07436 | Lymphoblastoid cell lines | NA07436 | Female | European | Control |
NA07353 | Lymphoblastoid cell lines | NA07353 | Male | European | Control |
NA07025 | Lymphoblastoid cell lines | NA07025 | Female | European | Control |
NA06998 | Lymphoblastoid cell lines | NA06998 | Male | European | Control |
NA07060 | Lymphoblastoid cell lines | NA07060 | Male | European | Control |
NA07024 | Lymphoblastoid cell lines | NA07024 | Male | European | Control |
NA07023 | Lymphoblastoid cell lines | NA07023 | Female | European | Control |
NA07678 | Lymphoblastoid cell lines | NA07678 | Male | European | Control |
NA07340 | Lymphoblastoid cell lines | NA07340 | Female | European | Control |
NA07053 | Lymphoblastoid cell lines | NA07053 | Female | European | Control |
NA07032 | Lymphoblastoid cell lines | NA07032 | Male | European | Control |
NA07354 | Lymphoblastoid cell lines | NA07354 | Female | European | Control |
NA06995 | Lymphoblastoid cell lines | NA06995 | Male | European | Control |
NA07018 | Lymphoblastoid cell lines | NA07018 | Male | European | Control |
NA10837 | Lymphoblastoid cell lines | NA10837 | Male | European | Control |
NA07062 | Lymphoblastoid cell lines | NA07062 | Female | European | Control |
NA07059 | Lymphoblastoid cell lines | NA07059 | Female | European | Control |
NA07006 | Lymphoblastoid cell lines | NA07006 | Female | European | Control |
NA06983 | Lymphoblastoid cell lines | NA06983 | Male | European | Control |
NA07350 | Lymphoblastoid cell lines | NA07350 | Female | European | Control |
NA07010 | Lymphoblastoid cell lines | NA07010 | Female | European | Control |
NA07012 | Lymphoblastoid cell lines | NA07012 | Female | European | Control |
NA10832 | Lymphoblastoid cell lines | NA10832 | Male | European | Control |
NA07043 | Lymphoblastoid cell lines | NA07043 | Male | European | Control |
NA07015 | Lymphoblastoid cell lines | NA07015 | Male | European | Control |
NA06992 | Lymphoblastoid cell lines | NA06992 | Male | European | Control |
NA07352 | Lymphoblastoid cell lines | NA07352 | Male | European | Control |
NA07046 | Lymphoblastoid cell lines | NA07046 | Male | European | Control |
NA07431 | Lymphoblastoid cell lines | NA07431 | Male | European | Control |
NA07351 | Lymphoblastoid cell lines | NA07351 | Male | European | Control |
NA07001 | Lymphoblastoid cell lines | NA07001 | Male | European | Control |
NA06997 | Lymphoblastoid cell lines | NA06997 | Female | European | Control |
NA07033 | Lymphoblastoid cell lines | NA07033 | Male | European | Control |
NA07028 | Lymphoblastoid cell lines | NA07028 | Male | European | Control |
NA07050 | Lymphoblastoid cell lines | NA07050 | Female | European | Control |
NA06996 | Lymphoblastoid cell lines | NA06996 | Female | European | Control |
NA07047 | Lymphoblastoid cell lines | NA07047 | Male | European | Control |
NA07347 | Lymphoblastoid cell lines | NA07347 | Male | European | Control |
NA06988 | Lymphoblastoid cell lines | NA06988 | Female | European | Control |
NA07356 | Lymphoblastoid cell lines | NA07356 | Male | European | Control |
NA07045 | Lymphoblastoid cell lines | NA07045 | Female | European | Control |
NA07052 | Lymphoblastoid cell lines | NA07052 | Male | European | Control |
NA07035 | Lymphoblastoid cell lines | NA07035 | Male | European | Control |
NA07349 | Lymphoblastoid cell lines | NA07349 | Male | European | Control |
NA07011 | Lymphoblastoid cell lines | NA07011 | Female | European | Control |
NA07057 | Lymphoblastoid cell lines | NA07057 | Male | European | Control |
NA07002 | Lymphoblastoid cell lines | NA07002 | Female | European | Control |
NA10841 | Lymphoblastoid cell lines | NA10841 | Male | European | Control |
NA07355 | Lymphoblastoid cell lines | NA07355 | Male | European | Control |
NA07008 | Lymphoblastoid cell lines | NA07008 | Male | European | Control |
NA07017 | Lymphoblastoid cell lines | NA07017 | Male | European | Control |
NA07051 | Lymphoblastoid cell lines | NA07051 | Male | European | Control |
NA07026 | Lymphoblastoid cell lines | NA07026 | Male | European | Control |
NA07031 | Lymphoblastoid cell lines | NA07031 | Female | European | Control |
NA07020 | Lymphoblastoid cell lines | NA07020 | Male | European | Control |
NA06986 | Lymphoblastoid cell lines | NA06986 | Male | European | Control |
NA10833 | Lymphoblastoid cell lines | NA10833 | Female | European | Control |
NA07054 | Lymphoblastoid cell lines | NA07054 | Male | European | Control |
NA07040 | Lymphoblastoid cell lines | NA07040 | Male | European | Control |
NA07004 | Lymphoblastoid cell lines | NA07004 | Male | European | Control |
NA07679 | Lymphoblastoid cell lines | NA07679 | Male | European | Control |
NA07435 | Lymphoblastoid cell lines | NA07435 | Male | European | Control |
NA07058 | Lymphoblastoid cell lines | NA07058 | Female | European | Control |
NA10834 | Lymphoblastoid cell lines | NA10834 | Female | European | Control |
NA07346 | Lymphoblastoid cell lines | NA07346 | Female | European | Control |
NA07049 | Lymphoblastoid cell lines | NA07049 | Male | European | Control |
NA07433 | Lymphoblastoid cell lines | NA07433 | Male | European | Control |
NA07061 | Lymphoblastoid cell lines | NA07061 | Male | European | Control |
NA07344 | Lymphoblastoid cell lines | NA07344 | Female | European | Control |
NA07434 | Lymphoblastoid cell lines | NA07434 | Female | European | Control |
NA07027 | Lymphoblastoid cell lines | NA07027 | Male | European | Control |
NA06982 | Lymphoblastoid cell lines | NA06982 | Male | European | Control |
NA07037 | Lymphoblastoid cell lines | NA07037 | Female | European | Control |
NA07021 | Lymphoblastoid cell lines | NA07021 | Male | European | Control |
NA07342 | Lymphoblastoid cell lines | NA07342 | Male | European | Control |
NA06980 | Lymphoblastoid cell lines | NA06980 | Female | European | Control |
NA07038 | Lymphoblastoid cell lines | NA07038 | Male | European | Control |
NA07036 | Lymphoblastoid cell lines | NA07036 | Male | European | Control |
NA06987 | Lymphoblastoid cell lines | NA06987 | Female | European | Control |
NA07044 | Lymphoblastoid cell lines | NA07044 | Female | European | Control |
- Sampleset ID:
- 4
- Name:
- Leicester_Europeans
- Sampleset Type:
- Control
- Size:
- 92
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Control
Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
---|---|---|---|---|---|
F16 | SALIVA | F16 | Female | European | Control |
T9 | SALIVA | T9 | Female | European | Control |
L11 | SALIVA | L11 | Female | European | Control |
E48 | SALIVA | E48 | Male | European | Control |
E22 | SALIVA | E22 | Male | European | Control |
L31 | SALIVA | L31 | Female | European | Control |
E13 | SALIVA | E13 | Male | European | Control |
L29 | SALIVA | L29 | Female | European | Control |
F33 | SALIVA | F33 | Male | European | Control |
F21 | SALIVA | F21 | Female | European | Control |
E61 | SALIVA | E61 | Female | European | Control |
L36 | SALIVA | L36 | Female | European | Control |
F26 | SALIVA | F26 | Female | European | Control |
F37 | SALIVA | F37 | Female | European | Control |
E18 | SALIVA | E18 | Female | European | Control |
F8 | SALIVA | F8 | Female | European | Control |
F59 | SALIVA | F59 | Male | European | Control |
E54 | SALIVA | E54 | Female | European | Control |
E6 | SALIVA | E6 | Female | European | Control |
T42 | SALIVA | T42 | Male | European | Control |
T3 | SALIVA | T3 | Male | European | Control |
E64 | SALIVA | E64 | Male | European | Control |
E45 | SALIVA | E45 | Male | European | Control |
F56 | SALIVA | F56 | Female | European | Control |
F64 | SALIVA | F64 | Male | European | Control |
E46 | SALIVA | E46 | Male | European | Control |
F31 | SALIVA | F31 | Female | European | Control |
F70 | SALIVA | F70 | Female | European | Control |
F38 | SALIVA | F38 | Male | European | Control |
F54 | SALIVA | F54 | Male | European | Control |
E42 | SALIVA | E42 | Male | European | Control |
T32 | SALIVA | T32 | Female | European | Control |
F2 | SALIVA | F2 | Female | European | Control |
L33 | SALIVA | L33 | Female | European | Control |
F45 | SALIVA | F45 | Male | European | Control |
F36 | SALIVA | F36 | Female | European | Control |
F24 | SALIVA | F24 | Male | European | Control |
E41 | SALIVA | E41 | Male | European | Control |
L39 | SALIVA | L39 | Female | European | Control |
F66 | SALIVA | F66 | Male | European | Control |
F44 | SALIVA | F44 | Male | European | Control |
L6 | SALIVA | L6 | Male | European | Control |
F6 | SALIVA | F6 | Female | European | Control |
L21 | SALIVA | L21 | Male | European | Control |
T43 | SALIVA | T43 | Female | European | Control |
F17 | SALIVA | F17 | Female | European | Control |
E19 | SALIVA | E19 | Female | European | Control |
T50 | SALIVA | T50 | Female | European | Control |
T5 | SALIVA | T5 | Female | European | Control |
F28 | SALIVA | F28 | Male | European | Control |
E40 | SALIVA | E40 | Male | European | Control |
E43 | SALIVA | E43 | Female | European | Control |
T16 | SALIVA | T16 | Female | European | Control |
T20 | SALIVA | T20 | Female | European | Control |
L17 | SALIVA | L17 | Male | European | Control |
T23 | SALIVA | T23 | Female | European | Control |
L14 | SALIVA | L14 | Male | European | Control |
F57 | SALIVA | F57 | Male | European | Control |
F65 | SALIVA | F65 | Female | European | Control |
E24 | SALIVA | E24 | Male | European | Control |
E17 | SALIVA | E17 | Female | European | Control |
F7 | SALIVA | F7 | Male | European | Control |
E4 | SALIVA | E4 | Male | European | Control |
L20 | SALIVA | L20 | Male | European | Control |
F51 | SALIVA | F51 | Female | European | Control |
L24 | SALIVA | L24 | Male | European | Control |
L16 | SALIVA | L16 | Male | European | Control |
F42 | SALIVA | F42 | Male | European | Control |
F9 | SALIVA | F9 | Female | European | Control |
E23 | SALIVA | E23 | Male | European | Control |
L27 | SALIVA | L27 | Female | European | Control |
F63 | SALIVA | F63 | Male | European | Control |
L5 | SALIVA | L5 | Female | European | Control |
F13 | SALIVA | F13 | Male | European | Control |
E1 | SALIVA | E1 | Male | European | Control |
L34 | SALIVA | L34 | Female | European | Control |
F40 | SALIVA | F40 | Male | European | Control |
F68 | SALIVA | F68 | Male | European | Control |
T73 | SALIVA | T73 | Female | European | Control |
E59 | SALIVA | E59 | Male | European | Control |
F22 | SALIVA | F22 | Female | European | Control |
F23 | SALIVA | F23 | Male | European | Control |
E51 | SALIVA | E51 | Female | European | Control |
F58 | SALIVA | F58 | Male | European | Control |
F19 | SALIVA | F19 | Female | European | Control |
F50 | SALIVA | F50 | Male | European | Control |
F18 | SALIVA | F18 | Female | European | Control |
F5 | SALIVA | F5 | Male | European | Control |
F11 | SALIVA | F11 | Male | European | Control |
F12 | SALIVA | F12 | Male | European | Control |
F49 | SALIVA | F49 | Female | European | Control |
L37 | SALIVA | L37 | Male | European | Control |
- Sampleset ID:
- 5
- Name:
- Leicester_nonEuropeans
- Sampleset Type:
- Control
- Size:
- 33
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Control
Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
---|---|---|---|---|---|
F52 | SALIVA | F52 | Male | Indian | Control |
T28 | SALIVA | T28 | Male | Turkish | Control |
E8 | SALIVA | E8 | Male | Indian | Control |
E47 | SALIVA | E47 | Female | Indian | Control |
F15 | SALIVA | F15 | Female | Indian | Control |
F32 | SALIVA | F32 | Female | Iranian | Control |
E39 | SALIVA | E39 | Male | Indian | Control |
E7 | SALIVA | E7 | Female | Indian | Control |
E2 | SALIVA | E2 | Male | Sudan | Control |
F3 | SALIVA | F3 | Male | Iranian | Control |
F25 | SALIVA | F25 | Female | Iranian | Control |
T24 | SALIVA | T24 | Female | Indian | Control |
F34 | SALIVA | F34 | Female | Jordanian | Control |
T27 | SALIVA | T27 | Male | Asian-British | Control |
E49 | SALIVA | E49 | Female | Indian | Control |
T53 | SALIVA | T53 | Male | Indian | Control |
T15 | SALIVA | T15 | Male | Indian | Control |
E55 | SALIVA | E55 | Male | African | Control |
L2 | SALIVA | L2 | Female | Phillipines | Control |
F62 | SALIVA | F62 | Male | Indian | Control |
E50 | SALIVA | E50 | Female | Indian | Control |
E57 | SALIVA | E57 | Male | Indian | Control |
T10 | SALIVA | T10 | Female | Chinese | Control |
F10 | SALIVA | F10 | Female | Indian | Control |
F1 | SALIVA | F1 | Male | Indian | Control |
L28 | SALIVA | L28 | Female | Indian | Control |
F4 | SALIVA | F4 | Female | Libya | Control |
T8 | SALIVA | T8 | Female | Malaysian | Control |
T39 | SALIVA | T39 | Female | Indian | Control |
E36 | SALIVA | E36 | Female | Chinese | Control |
E60 | SALIVA | E60 | Female | Indian | Control |
E53 | SALIVA | E53 | Female | Indian | Control |
E5 | SALIVA | E5 | Female | Indian | Control |
Experimental Details
Experiment ID | Type | Method | Analysis | Number of Variant Calls |
---|---|---|---|---|
1 | Discovery | qPCR | Probe signal intensity | 1,824 |
2 | Discovery | qPCR | Probe signal intensity | 1,824 |
3 | Discovery | Oligo aCGH | Probe signal intensity | 269 |
4 | Validation | PCR | Manual observation | 535 |
5 | Validation | PCR | Manual observation | 130 |
Validations
Experiment ID | Method | Analysis | Number of Variant Calls Validated |
---|---|---|---|
4 | PCR | Manual observation | 535 |
5 | PCR | Manual observation | 130 |