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dbVar

Database of genomic structural variation

nstd153 (Szafranski et al. 2018)

Organism:: Human
Study Type:: Case-Set
Submitter:: Pawel Stankiewicz
Description:: This study concerns analysis of genomic instability hotspot at 16q24.1 using array CGH, long-range PCR, DNA sequencing and bioinformatics approaches. See Variant Summary counts for nstd153 in dbVar Variant Summary.
Publication(s):: Szafranski et al. 2018

Links

Source: NCBI

Detailed Information: Download 8 Variant Regions, Download 8 Variant Calls, Download Both, FTP

Variant Summary
Samplesets
Experimental Details
Validations

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Variant Summary for:

Sequence ID	Chr	Number of Variant Regions	Number of Variant Calls	Placement type	Link to graphical display
NC_000016.10	Chr16	8	8	Remapped	NC_000016.10

Remapping summary:

			Variant Region remap status						Variant Call remap status
Sequence ID	Chr	Variant Regions on source	Perfect	Good	Pass	Fail	Mult	Variant Calls on source	Perfect	Good	Pass	Fail	Mult
NC_000016.9	Chr16	8	8	0	0	0	0	8	8	0	0	0	0

Samplesets

Number of Samplesets: 1

Size:: 8
Organisms:: Homo sapiens
Sampleset Phenotype(s):: None reported

Experimental Details

Experiment ID	Type	Method	Analysis	Platforms	Number of Variant Calls
1	Discovery	Oligo aCGH	Probe signal intensity	Agilent	0
2	Discovery	PCR	Manual observation		0
3	Discovery	Sequencing	Sequence alignment		0
4	Discovery	Merging of experiments 1,2,3	Merging of experiments 1,2,3	See merged experiments	8

Validations

No validation data were submitted for this study.

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