nstd16 (Korbel et al. 2007)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Jan Korbel
- Description:
- We introduce high-throughput and massive paired-end mapping (PEM), a large-scale genome-sequencing method to identify structural variants (SVs) ~3 kilobases (kb) or larger that combines the rescue and capture of paired ends of 3-kb fragments, massive 454 sequencing, and a computational approach to map DNA reads onto a reference genome. See Variant Summary counts for nstd16 in dbVar Variant Summary.
- Project:
- PRJNA33627
- Publication(s):
- Korbel et al. 2007
Detailed Information: Download 1290 Variant Regions, Download 1290 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 119 | 119 | Remapped | NC_000001.11 |
| NC_012920.1 | ChrMT | 6 | 6 | Remapped | NC_012920.1 |
| NC_000002.12 | Chr2 | 84 | 84 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 79 | 79 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 112 | 112 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 60 | 60 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 65 | 65 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 83 | 83 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 66 | 66 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 52 | 52 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 53 | 53 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 46 | 46 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 45 | 45 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 23 | 23 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 34 | 34 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 29 | 29 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 52 | 52 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 40 | 40 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 23 | 23 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 39 | 39 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 29 | 29 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 21 | 21 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 42 | 42 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 39 | 39 | Remapped | NC_000023.11 |
| NT_187513.1 | Unplaced|NT_187513.1 | 8 | 8 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 4 | 4 | Remapped | NT_187361.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 1 | 1 | Remapped | NT_187515.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 3 | 3 | Remapped | NW_018654707.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 1 | Remapped | NT_187527.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 2 | 2 | Remapped | NW_012132915.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 1 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 1 | 1 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 1 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 1 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 1 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 1 | Remapped | NT_187532.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 1 | Remapped | NT_187537.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 1 | 1 | Remapped | NT_187649.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 1 | 1 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 1 | Remapped | NT_167250.2 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 2 | 2 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 1 | 1 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 1 | 1 | Remapped | NT_167249.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 1 | 1 | Remapped | NT_113891.3 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 2 | 2 | Remapped | NW_017852930.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 2 | Remapped | NT_187566.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 1 | 1 | Remapped | NT_187568.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 2 | 2 | Remapped | NT_187576.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 7 | 7 | Remapped | NW_018654717.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 1 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 1 | Remapped | NW_013171806.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 1 | Remapped | NT_187657.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 1 | 1 | Remapped | NT_187584.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 1 | Remapped | NT_187658.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 1 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 1 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 1 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 1 | Remapped | NW_015148967.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 1 | 1 | Remapped | NT_187594.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 3 | 3 | Remapped | NW_011332699.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 6 | 6 | Remapped | NT_113796.3 |
| NT_187600.1 | Chr14|NT_187600.1 | 14 | 14 | Remapped | NT_187600.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 2 | Remapped | NW_018654722.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 3 | Remapped | NT_187607.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 2 | 2 | Remapped | NW_018654723.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 1 | Remapped | NT_187661.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 2 | 2 | Remapped | NT_187614.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 3 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 2 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 2 | 2 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 1 | Remapped | NW_003571055.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 2 | 2 | Remapped | NW_003571054.1 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 170 | 170 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 82 | 82 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 79 | 79 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 112 | 112 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 60 | 60 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 69 | 69 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 83 | 83 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 67 | 67 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 54 | 54 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 56 | 56 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 46 | 46 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 45 | 45 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 23 | 23 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 34 | 34 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 29 | 29 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 53 | 53 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 41 | 41 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 23 | 23 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 38 | 38 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 27 | 27 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 22 | 22 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 24 | 24 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 39 | 39 | Remapped | NC_000023.10 |
| NC_012920.1 | ChrMT | 6 | 6 | Remapped | NC_012920.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 4 | 4 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 7 | 7 | Remapped | NW_003871056.3 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 1 | 1 | Remapped | NW_004504299.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 2 | 2 | Remapped | NW_003571034.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 1 | Remapped | NW_004775427.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 1 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 1 | 1 | Remapped | NT_113891.2 |
| NT_167246.1 | Chr6|NT_167246.1 | 2 | 2 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 1 | 1 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 1 | 1 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 1 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 3 | 3 | Remapped | NW_004504300.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 1 | 1 | Remapped | NW_003571038.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 4 | 4 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 1 | Remapped | NW_004775430.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 2 | 2 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 2 | 2 | Remapped | NW_004775431.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 2 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 1 | Remapped | NW_003871071.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 15 | 15 | Remapped | NW_004166863.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 2 | 2 | Remapped | NW_003315950.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 1 | 1 | Remapped | NW_004775433.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 1 | 1 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 2 | Remapped | NW_004166865.1 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 1 | 1 | Remapped | NW_004070877.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 2 | 2 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 3 | 3 | Remapped | NW_004070880.2 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 1 | 1 | Remapped | NW_004070890.2 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 2 | 2 | Remapped | NW_004166866.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 170 | 170 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 82 | 82 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 79 | 79 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 113 | 113 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 60 | 60 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 69 | 69 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 83 | 83 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 67 | 67 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 54 | 54 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 59 | 59 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 46 | 46 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 45 | 45 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 23 | 23 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 34 | 34 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 29 | 29 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 53 | 53 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 42 | 42 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 23 | 23 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 40 | 40 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 27 | 27 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 22 | 22 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 25 | 25 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 39 | 39 | Submitted | NC_000023.9 |
| NC_001807.4 | ChrMT | 6 | 6 | Submitted | NC_001807.4 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 170 | 113 | 16 | 29 | 0 | 12 | 170 | 113 | 16 | 29 | 0 | 12 |
| NC_000002.10 | Chr2 | 82 | 71 | 5 | 5 | 0 | 1 | 82 | 71 | 5 | 5 | 0 | 1 |
| NC_000003.10 | Chr3 | 79 | 72 | 6 | 1 | 0 | 0 | 79 | 72 | 6 | 1 | 0 | 0 |
| NC_000004.10 | Chr4 | 113 | 100 | 8 | 0 | 1 | 4 | 113 | 100 | 8 | 0 | 1 | 4 |
| NC_000005.8 | Chr5 | 60 | 56 | 2 | 1 | 0 | 1 | 60 | 56 | 2 | 1 | 0 | 1 |
| NC_000006.10 | Chr6 | 69 | 59 | 2 | 0 | 0 | 8 | 69 | 59 | 2 | 0 | 0 | 8 |
| NC_000007.12 | Chr7 | 83 | 67 | 4 | 6 | 0 | 6 | 83 | 67 | 4 | 6 | 0 | 6 |
| NC_000008.9 | Chr8 | 67 | 58 | 5 | 0 | 0 | 4 | 67 | 58 | 5 | 0 | 0 | 4 |
| NC_000009.10 | Chr9 | 54 | 37 | 8 | 9 | 0 | 0 | 54 | 37 | 8 | 9 | 0 | 0 |
| NC_000010.9 | Chr10 | 59 | 46 | 4 | 2 | 2 | 4 | 59 | 46 | 4 | 2 | 2 | 4 |
| NC_000011.8 | Chr11 | 46 | 42 | 4 | 0 | 0 | 0 | 46 | 42 | 4 | 0 | 0 | 0 |
| NC_000012.10 | Chr12 | 45 | 40 | 4 | 1 | 0 | 0 | 45 | 40 | 4 | 1 | 0 | 0 |
| NC_000013.9 | Chr13 | 23 | 23 | 0 | 0 | 0 | 0 | 23 | 23 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 34 | 18 | 1 | 0 | 0 | 15 | 34 | 18 | 1 | 0 | 0 | 15 |
| NC_000015.8 | Chr15 | 29 | 20 | 3 | 6 | 0 | 0 | 29 | 20 | 3 | 6 | 0 | 0 |
| NC_000016.8 | Chr16 | 53 | 47 | 5 | 1 | 0 | 0 | 53 | 47 | 5 | 1 | 0 | 0 |
| NC_000017.9 | Chr17 | 42 | 20 | 10 | 4 | 1 | 7 | 42 | 20 | 10 | 4 | 1 | 7 |
| NC_000018.8 | Chr18 | 23 | 22 | 0 | 0 | 0 | 1 | 23 | 22 | 0 | 0 | 0 | 1 |
| NC_000019.8 | Chr19 | 40 | 37 | 1 | 0 | 0 | 2 | 40 | 37 | 1 | 0 | 0 | 2 |
| NC_000020.9 | Chr20 | 27 | 22 | 0 | 5 | 0 | 0 | 27 | 22 | 0 | 5 | 0 | 0 |
| NC_000021.7 | Chr21 | 22 | 21 | 1 | 0 | 0 | 0 | 22 | 21 | 1 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 25 | 20 | 3 | 1 | 1 | 0 | 25 | 20 | 3 | 1 | 1 | 0 |
| NC_000023.9 | ChrX | 39 | 29 | 1 | 0 | 0 | 9 | 39 | 29 | 1 | 0 | 0 | 9 |
| NC_001807.4 | ChrMT | 6 | 5 | 1 | 0 | 0 | 0 | 6 | 5 | 1 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 170 | 96 | 16 | 34 | 18 | 6 | 170 | 96 | 16 | 34 | 18 | 6 |
| NC_000002.10 | Chr2 | 82 | 62 | 9 | 6 | 1 | 4 | 82 | 62 | 9 | 6 | 1 | 4 |
| NC_000003.10 | Chr3 | 79 | 68 | 8 | 1 | 0 | 2 | 79 | 68 | 8 | 1 | 0 | 2 |
| NC_000004.10 | Chr4 | 113 | 100 | 7 | 2 | 1 | 3 | 113 | 100 | 7 | 2 | 1 | 3 |
| NC_000005.8 | Chr5 | 60 | 55 | 4 | 1 | 0 | 0 | 60 | 55 | 4 | 1 | 0 | 0 |
| NC_000006.10 | Chr6 | 69 | 57 | 2 | 2 | 4 | 4 | 69 | 57 | 2 | 2 | 4 | 4 |
| NC_000007.12 | Chr7 | 83 | 64 | 12 | 5 | 0 | 2 | 83 | 64 | 12 | 5 | 0 | 2 |
| NC_000008.9 | Chr8 | 67 | 47 | 2 | 7 | 0 | 11 | 67 | 47 | 2 | 7 | 0 | 11 |
| NC_000009.10 | Chr9 | 54 | 36 | 5 | 8 | 1 | 4 | 54 | 36 | 5 | 8 | 1 | 4 |
| NC_000010.9 | Chr10 | 59 | 42 | 5 | 3 | 5 | 3 | 59 | 42 | 5 | 3 | 5 | 3 |
| NC_000011.8 | Chr11 | 46 | 40 | 3 | 1 | 0 | 2 | 46 | 40 | 3 | 1 | 0 | 2 |
| NC_000012.10 | Chr12 | 45 | 33 | 6 | 2 | 0 | 4 | 45 | 33 | 6 | 2 | 0 | 4 |
| NC_000013.9 | Chr13 | 23 | 22 | 0 | 0 | 0 | 1 | 23 | 22 | 0 | 0 | 0 | 1 |
| NC_000014.7 | Chr14 | 34 | 13 | 4 | 1 | 0 | 16 | 34 | 13 | 4 | 1 | 0 | 16 |
| NC_000015.8 | Chr15 | 29 | 19 | 1 | 8 | 0 | 1 | 29 | 19 | 1 | 8 | 0 | 1 |
| NC_000016.8 | Chr16 | 53 | 36 | 7 | 4 | 1 | 5 | 53 | 36 | 7 | 4 | 1 | 5 |
| NC_000017.9 | Chr17 | 42 | 19 | 10 | 5 | 3 | 5 | 42 | 19 | 10 | 5 | 3 | 5 |
| NC_000018.8 | Chr18 | 23 | 22 | 0 | 0 | 0 | 1 | 23 | 22 | 0 | 0 | 0 | 1 |
| NC_000019.8 | Chr19 | 40 | 37 | 0 | 0 | 0 | 3 | 40 | 37 | 0 | 0 | 0 | 3 |
| NC_000020.9 | Chr20 | 27 | 21 | 1 | 5 | 0 | 0 | 27 | 21 | 1 | 5 | 0 | 0 |
| NC_000021.7 | Chr21 | 22 | 18 | 0 | 0 | 1 | 3 | 22 | 18 | 0 | 0 | 1 | 3 |
| NC_000022.9 | Chr22 | 25 | 17 | 0 | 4 | 2 | 2 | 25 | 17 | 0 | 4 | 2 | 2 |
| NC_000023.9 | ChrX | 39 | 29 | 4 | 6 | 0 | 0 | 39 | 29 | 4 | 6 | 0 | 0 |
| NC_001807.4 | ChrMT | 6 | 5 | 1 | 0 | 0 | 0 | 6 | 5 | 1 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Size:
- 2
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN00001583 | B-Lymphocyte | NA18505 | Female | YORUBA | Not reported |
| SAMN00000376 | B-Lymphocyte | NA15510 | Female | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Paired-end mapping | 454 | SRA | 1,290 |
| 2 | Validation | Oligo aCGH | Probe signal intensity | NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (1 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (2 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (3 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (4 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (5 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (6 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (7 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (8 of 8), See more...(5) | GEO | 31 |
| 3 | Validation | FISH | Manual observation | 4 | ||
| 4 | Validation | PCR | Manual observation | 510 |
Validations
| Experiment ID | Method | Analysis | Platform | Data | Number of Variant Calls Validated |
|---|---|---|---|---|---|
| 2 | Oligo aCGH | Probe signal intensity | NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (1 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (2 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (3 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (4 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (5 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (6 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (7 of 8), NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (8 of 8), See more...(5) | GEO | 31 |
| 3 | FISH | Manual observation | 4 | ||
| 4 | PCR | Manual observation | 510 |