nstd162 (Audano et al. 2019)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Peter Audano
- Description:
- Although the accuracy of the human reference genome is critical for basic and clinical research, structural variants (SVs) have been difficult to assess because data capable of resolving them have been limited. To address potential bias, we generated long-read sequence data on thirteen genomes. Systematically merging SVs yielded 95,827 sequence-resolved insertions, deletions, and inversions. Among these, we identified more than 1 Mbp of SVs shared among all genomes and more than 6.5 Mbp of SVs in the majority of genomes indicating errors or extreme minor alleles captured in the reference. See Variant Summary counts for nstd162 in dbVar Variant Summary.
- Project:
- PRJNA481779
- Publication(s):
- Audano et al. 2019
- Last updated:
- 2018-08-01
Detailed Information: Download 99810 Variant Regions, Download 342842 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 6,813 | 24,109 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 7,760 | 25,536 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,962 | 16,389 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 6,090 | 20,323 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 5,288 | 17,743 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 5,905 | 21,025 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 6,304 | 22,681 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 4,764 | 16,539 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 3,872 | 14,279 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 4,589 | 15,878 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 3,888 | 14,536 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 4,304 | 14,953 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 3,442 | 12,039 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 2,444 | 7,827 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 2,160 | 7,467 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 3,676 | 12,293 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 4,163 | 14,610 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 2,957 | 10,555 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 3,507 | 11,486 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 2,443 | 8,703 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 1,806 | 6,985 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 2,108 | 7,112 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 4,701 | 15,471 | Submitted | NC_000023.11 |
| NT_167208.1 | Unplaced|NT_167208.1 | 4 | 12 | Submitted | NT_167208.1 |
| NT_167209.1 | Unplaced|NT_167209.1 | 44 | 142 | Submitted | NT_167209.1 |
| NT_167211.2 | Unplaced|NT_167211.2 | 8 | 32 | Submitted | NT_167211.2 |
| NT_167213.1 | Unplaced|NT_167213.1 | 57 | 134 | Submitted | NT_167213.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 3 | 28 | Submitted | NT_167214.1 |
| NT_167218.1 | Unplaced|NT_167218.1 | 23 | 42 | Submitted | NT_167218.1 |
| NT_167220.1 | Unplaced|NT_167220.1 | 3 | 7 | Submitted | NT_167220.1 |
| NT_187420.1 | Unplaced|NT_187420.1 | 67 | 208 | Submitted | NT_187420.1 |
| NT_187424.1 | Unplaced|NT_187424.1 | 17 | 64 | Submitted | NT_187424.1 |
| NT_187425.1 | Unplaced|NT_187425.1 | 13 | 42 | Submitted | NT_187425.1 |
| NT_187432.1 | Unplaced|NT_187432.1 | 5 | 6 | Submitted | NT_187432.1 |
| NT_187433.1 | Unplaced|NT_187433.1 | 29 | 100 | Submitted | NT_187433.1 |
| NT_187443.1 | Unplaced|NT_187443.1 | 66 | 99 | Submitted | NT_187443.1 |
| NT_187450.1 | Unplaced|NT_187450.1 | 31 | 32 | Submitted | NT_187450.1 |
| NT_187451.1 | Unplaced|NT_187451.1 | 10 | 14 | Submitted | NT_187451.1 |
| NT_187497.1 | Unplaced|NT_187497.1 | 15 | 53 | Submitted | NT_187497.1 |
| NT_187498.1 | Unplaced|NT_187498.1 | 26 | 71 | Submitted | NT_187498.1 |
| NT_187499.1 | Unplaced|NT_187499.1 | 22 | 56 | Submitted | NT_187499.1 |
| NT_187501.1 | Unplaced|NT_187501.1 | 2 | 16 | Submitted | NT_187501.1 |
| NT_187503.1 | Unplaced|NT_187503.1 | 27 | 37 | Submitted | NT_187503.1 |
| NT_187504.1 | Unplaced|NT_187504.1 | 13 | 46 | Submitted | NT_187504.1 |
| NT_187505.1 | Unplaced|NT_187505.1 | 18 | 73 | Submitted | NT_187505.1 |
| NT_187508.1 | Unplaced|NT_187508.1 | 22 | 62 | Submitted | NT_187508.1 |
| NT_187509.1 | Unplaced|NT_187509.1 | 6 | 19 | Submitted | NT_187509.1 |
| NT_187510.1 | Unplaced|NT_187510.1 | 15 | 17 | Submitted | NT_187510.1 |
| NT_187511.1 | Unplaced|NT_187511.1 | 44 | 45 | Submitted | NT_187511.1 |
| NT_187512.1 | Unplaced|NT_187512.1 | 8 | 31 | Submitted | NT_187512.1 |
| NT_187513.1 | Unplaced|NT_187513.1 | 6 | 44 | Submitted | NT_187513.1 |
| NT_113889.1 | Unplaced|NT_113889.1 | 7 | 45 | Submitted | NT_113889.1 |
| NT_187506.1 | Unplaced|NT_187506.1 | 63 | 135 | Submitted | NT_187506.1 |
| NT_187502.1 | Unplaced|NT_187502.1 | 20 | 23 | Submitted | NT_187502.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 10 | 55 | Submitted | NT_187361.1 |
| NT_187362.1 | Chr1|NT_187362.1 | 1 | 3 | Submitted | NT_187362.1 |
| NT_187363.1 | Chr1|NT_187363.1 | 15 | 16 | Submitted | NT_187363.1 |
| NT_187365.1 | Chr1|NT_187365.1 | 2 | 11 | Submitted | NT_187365.1 |
| NT_187366.1 | Chr1|NT_187366.1 | 2 | 15 | Submitted | NT_187366.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 93 | 209 | Submitted | NT_187367.1 |
| NT_187368.1 | Chr1|NT_187368.1 | 3 | 8 | Submitted | NT_187368.1 |
| NT_187369.1 | Chr1|NT_187369.1 | 3 | 12 | Submitted | NT_187369.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 14 | Submitted | NT_187364.1 |
| NT_187370.1 | Chr2|NT_187370.1 | 136 | 261 | Submitted | NT_187370.1 |
| NT_187371.1 | Chr2|NT_187371.1 | 113 | 247 | Submitted | NT_187371.1 |
| NT_167215.1 | Chr3|NT_167215.1 | 12 | 43 | Submitted | NT_167215.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 10 | 54 | Submitted | NT_113793.3 |
| NT_113888.1 | Chr4|NT_113888.1 | 14 | 53 | Submitted | NT_113888.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 25 | 51 | Submitted | NT_113948.1 |
| NT_113901.1 | Chr7|NT_113901.1 | 13 | 63 | Submitted | NT_113901.1 |
| NT_187372.1 | Chr9|NT_187372.1 | 8 | 10 | Submitted | NT_187372.1 |
| NT_187373.1 | Chr9|NT_187373.1 | 2 | 15 | Submitted | NT_187373.1 |
| NT_187374.1 | Chr9|NT_187374.1 | 13 | 62 | Submitted | NT_187374.1 |
| NT_187375.1 | Chr9|NT_187375.1 | 7 | 25 | Submitted | NT_187375.1 |
| NT_187376.1 | Chr11|NT_187376.1 | 1 | 3 | Submitted | NT_187376.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 10 | 57 | Submitted | NT_113796.3 |
| NT_167219.1 | Chr14|NT_167219.1 | 56 | 132 | Submitted | NT_167219.1 |
| NT_187377.1 | Chr14|NT_187377.1 | 27 | 48 | Submitted | NT_187377.1 |
| NT_187378.1 | Chr14|NT_187378.1 | 11 | 33 | Submitted | NT_187378.1 |
| NT_187379.1 | Chr14|NT_187379.1 | 6 | 17 | Submitted | NT_187379.1 |
| NT_187380.1 | Chr14|NT_187380.1 | 23 | 71 | Submitted | NT_187380.1 |
| NT_187381.1 | Chr14|NT_187381.1 | 2 | 2 | Submitted | NT_187381.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 24 | 59 | Submitted | NT_187382.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 74 | 223 | Submitted | NT_187383.1 |
| NT_113930.2 | Chr17|NT_113930.2 | 9 | 37 | Submitted | NT_113930.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 122 | 155 | Submitted | NT_187384.1 |
| NT_187385.1 | Chr17|NT_187385.1 | 69 | 75 | Submitted | NT_187385.1 |
| NT_187386.1 | Chr22|NT_187386.1 | 15 | 32 | Submitted | NT_187386.1 |
| NT_187387.1 | Chr22|NT_187387.1 | 6 | 20 | Submitted | NT_187387.1 |
| NT_187388.1 | Chr22|NT_187388.1 | 10 | 47 | Submitted | NT_187388.1 |
| NT_187389.1 | Chr22|NT_187389.1 | 17 | 36 | Submitted | NT_187389.1 |
| NT_187390.1 | Chr22|NT_187390.1 | 3 | 16 | Submitted | NT_187390.1 |
| NT_187391.1 | Chr22|NT_187391.1 | 2 | 7 | Submitted | NT_187391.1 |
| NT_187392.1 | Chr22|NT_187392.1 | 56 | 59 | Submitted | NT_187392.1 |
| NT_187393.1 | Chr22|NT_187393.1 | 88 | 133 | Submitted | NT_187393.1 |
| NT_187394.1 | Chr22|NT_187394.1 | 56 | 79 | Submitted | NT_187394.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 6,373 | 22,757 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 7,779 | 25,461 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,923 | 16,284 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 5,997 | 19,967 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 5,284 | 17,739 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 5,684 | 20,175 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 6,189 | 22,274 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 4,571 | 15,982 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 3,797 | 14,002 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 4,426 | 15,298 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 3,741 | 14,135 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 4,229 | 14,831 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 3,381 | 11,867 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 2,301 | 7,373 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 2,240 | 7,606 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 3,679 | 12,284 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 3,373 | 11,699 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 2,913 | 10,381 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 3,319 | 10,910 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 2,323 | 8,460 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 1,819 | 7,044 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,936 | 6,776 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 4,377 | 14,258 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 7 | 39 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 25 | 65 | Remapped | NT_113923.1 |
| NT_167208.1 | Unplaced|NT_167208.1 | 4 | 12 | Remapped | NT_167208.1 |
| NT_167215.1 | Unplaced|NT_167215.1 | 12 | 43 | Remapped | NT_167215.1 |
| NT_167216.1 | Unplaced|NT_167216.1 | 3 | 5 | Remapped | NT_167216.1 |
| NT_167219.1 | Unplaced|NT_167219.1 | 57 | 135 | Remapped | NT_167219.1 |
| NT_167220.1 | Unplaced|NT_167220.1 | 3 | 7 | Remapped | NT_167220.1 |
| NT_167222.1 | Unplaced|NT_167222.1 | 4 | 23 | Remapped | NT_167222.1 |
| NT_167227.1 | Unplaced|NT_167227.1 | 7 | 8 | Remapped | NT_167227.1 |
| NT_113889.1 | Unplaced|NT_113889.1 | 7 | 45 | Remapped | NT_113889.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 9 | 61 | Remapped | NT_167214.1 |
| NT_167218.1 | Unplaced|NT_167218.1 | 35 | 68 | Remapped | NT_167218.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 58 | 147 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 1 | 4 | Remapped | NT_167225.1 |
| NT_167230.1 | Unplaced|NT_167230.1 | 1 | 10 | Remapped | NT_167230.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 8 | 32 | Remapped | NT_167211.1 |
| NT_167224.1 | Unplaced|NT_167224.1 | 13 | 14 | Remapped | NT_167224.1 |
| NT_167209.1 | Unplaced|NT_167209.1 | 93 | 247 | Remapped | NT_167209.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 22 | 39 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 15 | 35 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 7 | 23 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 17 | 90 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 524 | 1,562 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 66 | 273 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 10 | 34 | Remapped | NW_003871057.1 |
| NW_004070863.1 | Chr1|NW_004070863.1 | 4 | 21 | Remapped | NW_004070863.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 4 | 22 | Remapped | NW_004070864.2 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 2 | 15 | Remapped | NW_004070865.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 24 | 118 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 2 | 5 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 24 | 103 | Remapped | NW_004504299.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 2 | 7 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 2 | 7 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 19 | 62 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 6 | 11 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 18 | 36 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 2 | 12 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 6 | 19 | Remapped | NT_113885.1 |
| NT_113888.1 | Chr4|NT_113888.1 | 16 | 56 | Remapped | NT_113888.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 72 | 223 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 15 | 67 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 16 | 55 | Remapped | NW_004775427.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 25 | 51 | Remapped | NT_113948.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 1 | 1 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 4 | 9 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 2 | 5 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 2 | 5 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 4 | 23 | Remapped | NT_167249.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 9 | 52 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 42 | 89 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 1 | 12 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 18 | 74 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 89 | 298 | Remapped | NW_004775429.1 |
| NT_113901.1 | Chr7|NT_113901.1 | 18 | 73 | Remapped | NT_113901.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 11 | 54 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 19 | 101 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 37 | 90 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 45 | 103 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 6 | 27 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 109 | 411 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 7 | 41 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 18 | 90 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 79 | 286 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 49 | 169 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 96 | 238 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 6 | 15 | Remapped | NW_003871066.2 |
| NT_113914.1 | Chr9|NT_113914.1 | 3 | 3 | Remapped | NT_113914.1 |
| NT_113915.1 | Chr9|NT_113915.1 | 1 | 6 | Remapped | NT_113915.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 21 | 115 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 9 | 25 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 9 | 21 | Remapped | NW_003315927.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 31 | 85 | Remapped | NW_003871067.1 |
| NW_004070867.1 | Chr9|NW_004070867.1 | 14 | 24 | Remapped | NW_004070867.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 16 | 84 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 9 | 41 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 9 | 42 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 8 | 26 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 5 | 38 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 12 | 16 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 115 | 396 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 6 | 13 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 1 | 1 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 33 | 102 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 54 | 201 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 10 | 15 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 6 | 17 | Remapped | NW_004775432.1 |
| NT_113921.2 | Chr11|NT_113921.2 | 3 | 20 | Remapped | NT_113921.2 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 2 | 7 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 12 | 41 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 7 | 38 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 12 | 38 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 1 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 1 | 3 | Remapped | NW_003871077.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 2 | 17 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 2 | 4 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 5 | 34 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 37 | 159 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 182 | 431 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 37 | 144 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 9 | 74 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 9 | 20 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 10 | 12 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 200 | 624 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 7 | 31 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 1 | 14 | Remapped | NW_003871085.1 |
| NT_113930.1 | Chr17|NT_113930.1 | 6 | 31 | Remapped | NT_113930.1 |
| NT_113943.1 | Chr17|NT_113943.1 | 1 | 1 | Remapped | NT_113943.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 6 | 11 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 6 | 30 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 36 | 84 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 67 | 193 | Remapped | NW_003315950.2 |
| NW_003315951.1 | Chr17|NW_003315951.1 | 28 | 49 | Remapped | NW_003315951.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 3 | 21 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 17 | 103 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 20 | 66 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 46 | 145 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 8 | 38 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 705 | 2,283 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 2 | 3 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 18 | 23 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 23 | 81 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 45 | 197 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 170 | 485 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 24 | 69 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 12 | 40 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 2 | 15 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 18 | 64 | Remapped | NW_004504304.1 |
| NT_113950.2 | Chr21|NT_113950.2 | 6 | 19 | Remapped | NT_113950.2 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 4 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 26 | 59 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 5 | 14 | Remapped | NT_113961.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 2 | 2 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 12 | 50 | Remapped | NW_003871096.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 3 | 4 | Remapped | NW_004070873.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 31 | 58 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 24 | 32 | Remapped | NW_004070875.1 |
| NW_004070876.1 | Chr22|NW_004070876.1 | 13 | 40 | Remapped | NW_004070876.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 6 | 21 | Remapped | NT_167212.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 2 | 15 | Remapped | NT_167235.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 191 | 605 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 14 | 21 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 1 | 1 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 20 | 78 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 6 | 19 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 1 | 2 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 90 | 294 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 91 | 294 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 3 | 22 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 8 | 25 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 59 | 215 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 8 | 29 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 11 | 30 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 20 | 55 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 7 | 12 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 14 | 56 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 14 | 25 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 41 | 108 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 32 | 129 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 45 | 183 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 161 | 728 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 44 | 177 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 39 | 86 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 2 | 3 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 9 | 38 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 6,813 | 6,488 | 18 | 17 | 67 | 223 | 24,109 | 0 | 0 | 0 | 262 | 23,847 |
| NC_000002.12 | Chr2 | 7,760 | 7,555 | 33 | 23 | 100 | 49 | 25,536 | 0 | 0 | 0 | 263 | 25,273 |
| NC_000003.12 | Chr3 | 4,962 | 4,852 | 45 | 20 | 18 | 27 | 16,389 | 0 | 0 | 0 | 68 | 16,321 |
| NC_000004.12 | Chr4 | 6,090 | 5,971 | 3 | 0 | 69 | 47 | 20,323 | 0 | 0 | 0 | 275 | 20,048 |
| NC_000005.10 | Chr5 | 5,288 | 5,276 | 1 | 0 | 6 | 5 | 17,743 | 0 | 0 | 0 | 7 | 17,736 |
| NC_000006.12 | Chr6 | 5,905 | 5,475 | 47 | 18 | 210 | 155 | 21,025 | 0 | 0 | 0 | 791 | 20,234 |
| NC_000007.14 | Chr7 | 6,304 | 6,048 | 10 | 12 | 51 | 183 | 22,681 | 0 | 0 | 0 | 209 | 22,472 |
| NC_000008.11 | Chr8 | 4,764 | 4,649 | 10 | 12 | 30 | 63 | 16,539 | 0 | 0 | 0 | 94 | 16,445 |
| NC_000009.12 | Chr9 | 3,872 | 3,685 | 20 | 33 | 44 | 90 | 14,279 | 0 | 0 | 0 | 172 | 14,107 |
| NC_000010.11 | Chr10 | 4,589 | 4,330 | 5 | 3 | 85 | 166 | 15,878 | 0 | 0 | 0 | 285 | 15,593 |
| NC_000011.10 | Chr11 | 3,888 | 3,665 | 3 | 6 | 142 | 72 | 14,536 | 0 | 0 | 0 | 354 | 14,182 |
| NC_000012.12 | Chr12 | 4,304 | 4,121 | 0 | 1 | 10 | 172 | 14,953 | 0 | 0 | 0 | 23 | 14,930 |
| NC_000013.11 | Chr13 | 3,442 | 3,411 | 2 | 3 | 26 | 0 | 12,039 | 0 | 0 | 0 | 95 | 11,944 |
| NC_000014.9 | Chr14 | 2,444 | 2,355 | 10 | 7 | 8 | 64 | 7,827 | 0 | 0 | 0 | 45 | 7,782 |
| NC_000015.10 | Chr15 | 2,160 | 2,112 | 15 | 19 | 7 | 7 | 7,467 | 0 | 0 | 0 | 30 | 7,437 |
| NC_000016.10 | Chr16 | 3,676 | 3,604 | 1 | 5 | 65 | 1 | 12,293 | 0 | 0 | 0 | 209 | 12,084 |
| NC_000017.11 | Chr17 | 4,163 | 3,779 | 33 | 15 | 113 | 223 | 14,610 | 0 | 0 | 0 | 572 | 14,038 |
| NC_000018.10 | Chr18 | 2,957 | 2,906 | 3 | 3 | 45 | 0 | 10,555 | 0 | 0 | 0 | 175 | 10,380 |
| NC_000019.10 | Chr19 | 3,507 | 3,415 | 5 | 3 | 5 | 79 | 11,486 | 0 | 0 | 0 | 30 | 11,456 |
| NC_000020.11 | Chr20 | 2,443 | 2,288 | 2 | 6 | 119 | 28 | 8,703 | 0 | 0 | 0 | 223 | 8,480 |
| NC_000021.9 | Chr21 | 1,806 | 1,775 | 0 | 0 | 5 | 26 | 6,985 | 0 | 0 | 0 | 45 | 6,940 |
| NC_000022.11 | Chr22 | 2,108 | 1,896 | 23 | 17 | 142 | 30 | 7,112 | 0 | 0 | 0 | 289 | 6,823 |
| NC_000023.11 | ChrX | 4,701 | 3,789 | 5 | 8 | 146 | 753 | 15,471 | 0 | 0 | 0 | 451 | 15,020 |
| NT_113793.3 | Chr4|NT_113793.3 | 10 | 9 | 0 | 1 | 0 | 0 | 54 | 0 | 0 | 0 | 0 | 54 |
| NT_113796.3 | Chr14|NT_113796.3 | 10 | 10 | 0 | 0 | 0 | 0 | 57 | 0 | 0 | 0 | 0 | 57 |
| NT_113888.1 | Chr4|NT_113888.1 | 14 | 14 | 0 | 0 | 0 | 0 | 53 | 0 | 0 | 0 | 0 | 53 |
| NT_113889.1 | Unplaced|NT_113889.1 | 7 | 7 | 0 | 0 | 0 | 0 | 45 | 0 | 0 | 0 | 0 | 45 |
| NT_113901.1 | Chr7|NT_113901.1 | 13 | 13 | 0 | 0 | 0 | 0 | 63 | 0 | 0 | 0 | 0 | 63 |
| NT_113930.2 | Chr17|NT_113930.2 | 9 | 6 | 2 | 1 | 0 | 0 | 37 | 0 | 0 | 0 | 0 | 37 |
| NT_113948.1 | Chr5|NT_113948.1 | 25 | 25 | 0 | 0 | 0 | 0 | 51 | 0 | 0 | 0 | 0 | 51 |
| NT_167208.1 | Unplaced|NT_167208.1 | 4 | 4 | 0 | 0 | 0 | 0 | 12 | 0 | 0 | 0 | 0 | 12 |
| NT_167209.1 | Unplaced|NT_167209.1 | 44 | 44 | 0 | 0 | 0 | 0 | 142 | 0 | 0 | 0 | 0 | 142 |
| NT_167211.2 | Unplaced|NT_167211.2 | 8 | 7 | 0 | 1 | 0 | 0 | 32 | 0 | 0 | 0 | 0 | 32 |
| NT_167213.1 | Unplaced|NT_167213.1 | 57 | 57 | 0 | 0 | 0 | 0 | 134 | 0 | 0 | 0 | 0 | 134 |
| NT_167214.1 | Unplaced|NT_167214.1 | 3 | 3 | 0 | 0 | 0 | 0 | 28 | 0 | 0 | 0 | 0 | 28 |
| NT_167215.1 | Chr3|NT_167215.1 | 12 | 12 | 0 | 0 | 0 | 0 | 43 | 0 | 0 | 0 | 0 | 43 |
| NT_167218.1 | Unplaced|NT_167218.1 | 23 | 23 | 0 | 0 | 0 | 0 | 42 | 0 | 0 | 0 | 0 | 42 |
| NT_167219.1 | Chr14|NT_167219.1 | 56 | 56 | 0 | 0 | 0 | 0 | 132 | 0 | 0 | 0 | 0 | 132 |
| NT_167220.1 | Unplaced|NT_167220.1 | 3 | 3 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 7 |
| NT_187361.1 | Chr1|NT_187361.1 | 10 | 10 | 0 | 0 | 0 | 0 | 55 | 0 | 0 | 0 | 0 | 55 |
| NT_187362.1 | Chr1|NT_187362.1 | 1 | 0 | 0 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 3 |
| NT_187363.1 | Chr1|NT_187363.1 | 15 | 9 | 3 | 2 | 1 | 0 | 16 | 0 | 0 | 0 | 1 | 15 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 0 | 0 | 1 | 0 | 0 | 14 | 0 | 0 | 0 | 0 | 14 |
| NT_187365.1 | Chr1|NT_187365.1 | 2 | 0 | 1 | 0 | 1 | 0 | 11 | 0 | 0 | 0 | 3 | 8 |
| NT_187366.1 | Chr1|NT_187366.1 | 2 | 1 | 0 | 1 | 0 | 0 | 15 | 0 | 0 | 0 | 0 | 15 |
| NT_187367.1 | Chr1|NT_187367.1 | 93 | 53 | 8 | 10 | 22 | 0 | 209 | 0 | 0 | 0 | 62 | 147 |
| NT_187368.1 | Chr1|NT_187368.1 | 3 | 1 | 0 | 1 | 1 | 0 | 8 | 0 | 0 | 0 | 1 | 7 |
| NT_187369.1 | Chr1|NT_187369.1 | 3 | 1 | 1 | 0 | 1 | 0 | 12 | 0 | 0 | 0 | 2 | 10 |
| NT_187370.1 | Chr2|NT_187370.1 | 136 | 0 | 0 | 0 | 136 | 0 | 261 | 0 | 0 | 0 | 261 | 0 |
| NT_187371.1 | Chr2|NT_187371.1 | 113 | 0 | 0 | 0 | 113 | 0 | 247 | 0 | 0 | 0 | 247 | 0 |
| NT_187372.1 | Chr9|NT_187372.1 | 8 | 3 | 1 | 2 | 2 | 0 | 10 | 0 | 0 | 0 | 2 | 8 |
| NT_187373.1 | Chr9|NT_187373.1 | 2 | 1 | 0 | 1 | 0 | 0 | 15 | 0 | 0 | 0 | 0 | 15 |
| NT_187374.1 | Chr9|NT_187374.1 | 13 | 3 | 6 | 4 | 0 | 0 | 62 | 0 | 0 | 0 | 0 | 62 |
| NT_187375.1 | Chr9|NT_187375.1 | 7 | 1 | 0 | 2 | 4 | 0 | 25 | 0 | 0 | 0 | 9 | 16 |
| NT_187376.1 | Chr11|NT_187376.1 | 1 | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 3 |
| NT_187377.1 | Chr14|NT_187377.1 | 27 | 8 | 3 | 2 | 14 | 0 | 48 | 0 | 0 | 0 | 19 | 29 |
| NT_187378.1 | Chr14|NT_187378.1 | 11 | 3 | 1 | 3 | 4 | 0 | 33 | 0 | 0 | 0 | 11 | 22 |
| NT_187379.1 | Chr14|NT_187379.1 | 6 | 1 | 0 | 2 | 3 | 0 | 17 | 0 | 0 | 0 | 9 | 8 |
| NT_187380.1 | Chr14|NT_187380.1 | 23 | 3 | 5 | 6 | 9 | 0 | 71 | 0 | 0 | 0 | 21 | 50 |
| NT_187381.1 | Chr14|NT_187381.1 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 1 |
| NT_187382.1 | Chr15|NT_187382.1 | 24 | 8 | 10 | 5 | 1 | 0 | 59 | 0 | 0 | 0 | 1 | 58 |
| NT_187383.1 | Chr16|NT_187383.1 | 74 | 32 | 22 | 10 | 10 | 0 | 223 | 0 | 0 | 0 | 31 | 192 |
| NT_187384.1 | Chr17|NT_187384.1 | 122 | 75 | 9 | 9 | 29 | 0 | 155 | 0 | 0 | 0 | 49 | 106 |
| NT_187385.1 | Chr17|NT_187385.1 | 69 | 50 | 3 | 3 | 13 | 0 | 75 | 0 | 0 | 0 | 15 | 60 |
| NT_187386.1 | Chr22|NT_187386.1 | 15 | 5 | 4 | 3 | 3 | 0 | 32 | 0 | 0 | 0 | 3 | 29 |
| NT_187387.1 | Chr22|NT_187387.1 | 6 | 0 | 0 | 1 | 5 | 0 | 20 | 0 | 0 | 0 | 11 | 9 |
| NT_187388.1 | Chr22|NT_187388.1 | 10 | 5 | 3 | 0 | 2 | 0 | 47 | 0 | 0 | 0 | 10 | 37 |
| NT_187389.1 | Chr22|NT_187389.1 | 17 | 14 | 3 | 0 | 0 | 0 | 36 | 0 | 0 | 0 | 0 | 36 |
| NT_187390.1 | Chr22|NT_187390.1 | 3 | 1 | 1 | 1 | 0 | 0 | 16 | 0 | 0 | 0 | 0 | 16 |
| NT_187391.1 | Chr22|NT_187391.1 | 2 | 0 | 0 | 0 | 2 | 0 | 7 | 0 | 0 | 0 | 7 | 0 |
| NT_187392.1 | Chr22|NT_187392.1 | 56 | 3 | 2 | 1 | 50 | 0 | 59 | 0 | 0 | 0 | 52 | 7 |
| NT_187393.1 | Chr22|NT_187393.1 | 88 | 29 | 2 | 2 | 55 | 0 | 133 | 0 | 0 | 0 | 79 | 54 |
| NT_187394.1 | Chr22|NT_187394.1 | 56 | 0 | 0 | 0 | 56 | 0 | 79 | 0 | 0 | 0 | 79 | 0 |
| NT_187420.1 | Unplaced|NT_187420.1 | 67 | 6 | 1 | 2 | 58 | 0 | 208 | 0 | 0 | 0 | 171 | 37 |
| NT_187424.1 | Unplaced|NT_187424.1 | 17 | 0 | 0 | 0 | 17 | 0 | 64 | 0 | 0 | 0 | 64 | 0 |
| NT_187425.1 | Unplaced|NT_187425.1 | 13 | 0 | 0 | 0 | 13 | 0 | 42 | 0 | 0 | 0 | 42 | 0 |
| NT_187432.1 | Unplaced|NT_187432.1 | 5 | 0 | 0 | 0 | 5 | 0 | 6 | 0 | 0 | 0 | 6 | 0 |
| NT_187433.1 | Unplaced|NT_187433.1 | 29 | 0 | 0 | 0 | 29 | 0 | 100 | 0 | 0 | 0 | 100 | 0 |
| NT_187443.1 | Unplaced|NT_187443.1 | 66 | 0 | 0 | 0 | 66 | 0 | 99 | 0 | 0 | 0 | 99 | 0 |
| NT_187450.1 | Unplaced|NT_187450.1 | 31 | 2 | 1 | 0 | 28 | 0 | 32 | 0 | 0 | 0 | 29 | 3 |
| NT_187451.1 | Unplaced|NT_187451.1 | 10 | 0 | 0 | 0 | 10 | 0 | 14 | 0 | 0 | 0 | 14 | 0 |
| NT_187497.1 | Unplaced|NT_187497.1 | 15 | 9 | 3 | 0 | 3 | 0 | 53 | 0 | 0 | 0 | 16 | 37 |
| NT_187498.1 | Unplaced|NT_187498.1 | 26 | 12 | 5 | 8 | 1 | 0 | 71 | 0 | 0 | 0 | 7 | 64 |
| NT_187499.1 | Unplaced|NT_187499.1 | 22 | 14 | 2 | 2 | 4 | 0 | 56 | 0 | 0 | 0 | 4 | 52 |
| NT_187501.1 | Unplaced|NT_187501.1 | 2 | 0 | 1 | 1 | 0 | 0 | 16 | 0 | 0 | 0 | 0 | 16 |
| NT_187502.1 | Unplaced|NT_187502.1 | 20 | 1 | 0 | 0 | 19 | 0 | 23 | 0 | 0 | 0 | 22 | 1 |
| NT_187503.1 | Unplaced|NT_187503.1 | 27 | 6 | 3 | 3 | 15 | 0 | 37 | 0 | 0 | 0 | 17 | 20 |
| NT_187504.1 | Unplaced|NT_187504.1 | 13 | 1 | 3 | 7 | 2 | 0 | 46 | 0 | 0 | 0 | 9 | 37 |
| NT_187505.1 | Unplaced|NT_187505.1 | 18 | 3 | 1 | 5 | 9 | 0 | 73 | 0 | 0 | 0 | 24 | 49 |
| NT_187506.1 | Unplaced|NT_187506.1 | 63 | 19 | 3 | 3 | 38 | 0 | 135 | 0 | 0 | 0 | 75 | 60 |
| NT_187508.1 | Unplaced|NT_187508.1 | 22 | 1 | 1 | 1 | 19 | 0 | 62 | 0 | 0 | 0 | 48 | 14 |
| NT_187509.1 | Unplaced|NT_187509.1 | 6 | 4 | 2 | 0 | 0 | 0 | 19 | 0 | 0 | 0 | 0 | 19 |
| NT_187510.1 | Unplaced|NT_187510.1 | 15 | 6 | 0 | 3 | 6 | 0 | 17 | 0 | 0 | 0 | 7 | 10 |
| NT_187511.1 | Unplaced|NT_187511.1 | 44 | 0 | 0 | 0 | 44 | 0 | 45 | 0 | 0 | 0 | 45 | 0 |
| NT_187512.1 | Unplaced|NT_187512.1 | 8 | 0 | 0 | 0 | 8 | 0 | 31 | 0 | 0 | 0 | 31 | 0 |
| NT_187513.1 | Unplaced|NT_187513.1 | 6 | 6 | 0 | 0 | 0 | 0 | 44 | 0 | 0 | 0 | 0 | 44 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- EEE_SV-Pop.1-A
- Description:
- Discovery samples composed of 13 PacBio-sequenced genomes from diverse populations.
- Size:
- 13
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN03838746 | b-lymphocyte | NA19240 | Female | YRI | Not reported |
| SAMN04229552 | b-lymphocyte | HG00514 | Female | CHB | Not reported |
| SAMN04229548 | b-lymphocyte | HG00733 | Female | PUR | Not reported |
| SAMN05181962 | b-lymphocyte | NA12878 | Female | CEU | Not reported |
| SAMN09643900 | b-lymphocyte | HG00268 | Female | FIN | Not reported |
| SAMN05603745 | b-lymphocyte | HG02818 | Female | GWD | Not reported |
| SAMN05603729 | b-lymphocyte | HG01352 | Female | CLM | Not reported |
| SAMN09651199 | b-lymphocyte | HG02106 | Female | PEL | Not reported |
| SAMN06885952 | b-lymphocyte | NA19434 | Female | LWK | Not reported |
| SAMN02744161 | placenta | CHM1 | see individual samples | Not reported | |
| SAMN09690649 | b-lymphocyte | HG04217 | Female | ITU | Not reported |
| SAMN05603847 | b-lymphocyte | HG02059 | Female | KHV | Not reported |
| SAMN03255769 | placenta | CHM13 | Female | see individual samples | Not reported |
- Sampleset ID:
- 2
- Name:
- EEE_SV-Pop.1-B
- Description:
- Chinese HX1 sample
- Size:
- 1
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMN04251426 | b-lymphocyte | HX1 | Male | Chinese | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | de novo and local sequence assembly | PacBio RS II P6C4, PacBio Sequel v2.1 | 342,842 |