nstd168 (Levy-Sakin et al. 2019)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Claire Yik-Lok Chung
- Description:
- Large structural variants (SVs) in the human genome are difficult to study by conventional sequencing techniques. By analyzing optical genome maps of 154 individuals from the 26 populations sequenced in the 1000 Genomes Project, we find phylogenetic population patterns of large SVs similar to those of single nucleotide variations in 86% of the human genome, while ~2% of the genome has high structural complexity. The dataset includes SVs in many intractable genomic regions, including segmental duplications and subtelomeric, pericentromeric, and acrocentric areas. Our results highlight the need for a comprehensive set of alternate haplotypes from different populations to represent SV patterns. See Variant Summary counts for nstd168 in dbVar Variant Summary.
- Project:
- PRJNA418343
- Publication(s):
- Levy-Sakin et al. 2019
- Last updated:
- 2019-03-14
Detailed Information: Download 16424 Variant Regions, Download 16431 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,333 | 1,333 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,264 | 1,264 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 977 | 977 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 984 | 984 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 916 | 916 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 1,010 | 1,010 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 913 | 913 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 787 | 788 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 735 | 735 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 771 | 772 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 766 | 767 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 856 | 857 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 489 | 490 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 477 | 477 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 501 | 501 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 542 | 542 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 542 | 544 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 385 | 385 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 422 | 422 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 414 | 414 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 262 | 262 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 274 | 274 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 734 | 734 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 95 | 95 | Submitted | NC_000024.10 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 1,282 | 1,282 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,256 | 1,256 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 974 | 974 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 984 | 984 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 916 | 916 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 998 | 998 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 899 | 899 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 774 | 774 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 709 | 709 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 730 | 731 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 766 | 767 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 724 | 725 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 484 | 485 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 471 | 471 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 496 | 496 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 540 | 540 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 495 | 497 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 386 | 386 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 404 | 404 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 397 | 397 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 229 | 229 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 253 | 253 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 719 | 719 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 96 | 96 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 2 | 2 | Remapped | NT_113923.1 |
| NT_167222.1 | Unplaced|NT_167222.1 | 1 | 1 | Remapped | NT_167222.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 6 | 6 | Remapped | NT_167214.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 1 | 1 | Remapped | NT_167213.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 7 | 7 | Remapped | NT_167207.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 4 | 4 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 65 | 65 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 21 | 21 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 8 | 8 | Remapped | NW_003871057.1 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 1 | 1 | Remapped | NW_004070865.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 2 | 2 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 1 | 1 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 4 | 4 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 1 | 1 | Remapped | NW_003315910.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 6 | 6 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 1 | 1 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 1 | 1 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 1 | 1 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 2 | 2 | Remapped | NT_113885.1 |
| NW_003315916.1 | Chr4|NW_003315916.1 | 1 | 1 | Remapped | NW_003315916.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 5 | 5 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 3 | 3 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 7 | 7 | Remapped | NW_004775427.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 1 | 1 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 2 | 2 | Remapped | NW_004775428.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 1 | 1 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 4 | 4 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 4 | 4 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 2 | 2 | Remapped | NW_004775429.1 |
| NT_113901.1 | Chr7|NT_113901.1 | 4 | 4 | Remapped | NT_113901.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 1 | 1 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 6 | 6 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 7 | 7 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 1 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 38 | 38 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 3 | 3 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 3 | 3 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 6 | 7 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 4 | 4 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 8 | 8 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 1 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NT_113915.1 | Chr9|NT_113915.1 | 2 | 2 | Remapped | NT_113915.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 5 | 5 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 1 | 1 | Remapped | NW_003315926.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 6 | 6 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 3 | 3 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 1 | 1 | Remapped | NW_004070869.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 4 | 4 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 1 | 1 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 26 | 26 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 9 | 9 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 1 | 1 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 1 | 1 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 7 | 7 | Remapped | NW_004775432.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 2 | 2 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 1 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 2 | 2 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 3 | 3 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 1 | Remapped | NW_003871076.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 3 | 3 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 3 | 3 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 1 | 1 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 4 | 4 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 2 | 2 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 2 | 2 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 4 | 4 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 2 | 2 | Remapped | NW_004504303.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 10 | 10 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 2 | 2 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 1 | 1 | Remapped | NW_003871085.1 |
| NT_113930.1 | Chr17|NT_113930.1 | 3 | 3 | Remapped | NT_113930.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 9 | 9 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 7 | 7 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 2 | 2 | Remapped | NW_003571052.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 3 | 3 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 5 | 5 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 2 | 2 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 7 | 7 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 1 | 1 | Remapped | NW_004166864.2 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 6 | 6 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 4 | 4 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 17 | 17 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 5 | 5 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 4 | 4 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 1 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 2 | 2 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 1 | 1 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 3 | 3 | Remapped | NT_113961.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 1 | 1 | Remapped | NW_003871096.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 1 | 1 | Remapped | NT_167212.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 3 | 3 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 3 | 3 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 3 | 3 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 7 | 7 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 2 | 2 | Remapped | NW_003871101.3 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 43 | 43 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 28 | 28 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 2 | 2 | Remapped | NW_004070878.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 15 | 15 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 9 | 9 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 9 | 9 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 1 | 1 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 1 | 1 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 5 | 5 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 6 | 6 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 10 | 10 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 9 | 9 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 5 | 5 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 36 | 36 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 4 | 4 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 5 | 5 | Remapped | NW_004070892.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 3 | 3 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 1,333 | 1,219 | 30 | 21 | 3 | 86 | 1,333 | 1,219 | 30 | 21 | 3 | 86 |
| NC_000002.12 | Chr2 | 1,264 | 1,191 | 36 | 23 | 7 | 8 | 1,264 | 1,191 | 36 | 23 | 7 | 8 |
| NC_000003.12 | Chr3 | 977 | 934 | 21 | 8 | 2 | 15 | 977 | 934 | 21 | 8 | 2 | 15 |
| NC_000004.12 | Chr4 | 984 | 951 | 18 | 2 | 0 | 14 | 984 | 951 | 18 | 2 | 0 | 14 |
| NC_000005.10 | Chr5 | 916 | 894 | 9 | 1 | 1 | 21 | 916 | 894 | 9 | 1 | 1 | 21 |
| NC_000006.12 | Chr6 | 1,010 | 958 | 20 | 10 | 10 | 14 | 1,010 | 958 | 20 | 10 | 10 | 14 |
| NC_000007.14 | Chr7 | 913 | 819 | 36 | 13 | 0 | 47 | 913 | 819 | 36 | 13 | 0 | 47 |
| NC_000008.11 | Chr8 | 787 | 732 | 25 | 14 | 4 | 13 | 788 | 733 | 25 | 14 | 4 | 13 |
| NC_000009.12 | Chr9 | 735 | 670 | 6 | 25 | 18 | 20 | 735 | 670 | 6 | 25 | 18 | 20 |
| NC_000010.11 | Chr10 | 771 | 691 | 12 | 14 | 21 | 37 | 772 | 691 | 12 | 15 | 21 | 37 |
| NC_000011.10 | Chr11 | 766 | 715 | 22 | 6 | 2 | 22 | 767 | 716 | 22 | 6 | 2 | 22 |
| NC_000012.12 | Chr12 | 856 | 708 | 3 | 2 | 132 | 12 | 857 | 709 | 3 | 2 | 132 | 12 |
| NC_000013.11 | Chr13 | 489 | 466 | 8 | 11 | 3 | 2 | 490 | 466 | 8 | 12 | 3 | 2 |
| NC_000014.9 | Chr14 | 477 | 441 | 14 | 14 | 2 | 6 | 477 | 441 | 14 | 14 | 2 | 6 |
| NC_000015.10 | Chr15 | 501 | 471 | 12 | 6 | 5 | 14 | 501 | 471 | 12 | 6 | 5 | 14 |
| NC_000016.10 | Chr16 | 542 | 515 | 11 | 8 | 2 | 14 | 542 | 515 | 11 | 8 | 2 | 14 |
| NC_000017.11 | Chr17 | 542 | 461 | 20 | 21 | 25 | 17 | 544 | 463 | 20 | 21 | 25 | 17 |
| NC_000018.10 | Chr18 | 385 | 370 | 10 | 5 | 0 | 0 | 385 | 370 | 10 | 5 | 0 | 0 |
| NC_000019.10 | Chr19 | 422 | 383 | 19 | 6 | 0 | 14 | 422 | 383 | 19 | 6 | 0 | 14 |
| NC_000020.11 | Chr20 | 414 | 366 | 21 | 6 | 14 | 7 | 414 | 366 | 21 | 6 | 14 | 7 |
| NC_000021.9 | Chr21 | 262 | 189 | 39 | 14 | 13 | 11 | 262 | 189 | 39 | 14 | 13 | 11 |
| NC_000022.11 | Chr22 | 274 | 205 | 33 | 18 | 14 | 7 | 274 | 205 | 33 | 18 | 14 | 7 |
| NC_000023.11 | ChrX | 734 | 503 | 19 | 7 | 5 | 201 | 734 | 503 | 19 | 7 | 5 | 201 |
| NC_000024.10 | ChrY | 95 | 87 | 5 | 2 | 0 | 2 | 95 | 87 | 5 | 2 | 0 | 2 |
Samplesets
Number of Samplesets: 1
- Description:
- 154 unrelated individuals in 26 populations in the 1000 Genome Project
- Size:
- 154
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| SAMN00780011 | HG02687 | Male | PJL | Not reported |
| SAMN00249869 | HG01757 | Female | IBS | Not reported |
| SAMN00006466 | HG00513 | Female | CHS | Not reported |
| SAMN00779955 | HG02595 | Female | GWD | Not reported |
| SAMN00249889 | HG00851 | Female | CDX | Not reported |
| SAMN00009107 | HG00329 | Male | FIN | Not reported |
| SAMN01036849 | HG00623 | Female | CHS | Not reported |
| SAMN00780012 | HG02688 | Female | PJL | Not reported |
| SAMN01090936 | HG03615 | Male | BEB | Not reported |
| SAMN00006405 | HG00353 | Female | FIN | Not reported |
| SAMN00779997 | HG02604 | Female | PJL | Not reported |
| SAMN00630208 | HG02107 | Male | ACB | Not reported |
| SAMN01036848 | HG00622 | Male | CHS | Not reported |
| SAMN01036819 | HG03132 | Female | ESN | Not reported |
| SAMN00249924 | HG01816 | Male | CDX | Not reported |
| SAMN00006580 | HG00732 | Female | PUR | Not reported |
| SAMN01090940 | HG03797 | Male | BEB | Not reported |
| SAMN00006374 | HG00270 | Female | FIN | Not reported |
| SAMN01090934 | HG03007 | Female | BEB | Not reported |
| SAMN00006375 | HG00271 | Male | FIN | Not reported |
| SAMN00630217 | HG02283 | Male | ACB | Not reported |
| SAMN00009156 | HG01133 | Male | CLM | Not reported |
| SAMN01091013 | HG03727 | Male | ITU | Not reported |
| SAMN00255136 | HG01783 | Male | IBS | Not reported |
| SAMN01090982 | HG03740 | Male | STU | Not reported |
| SAMN00009157 | HG01134 | Female | CLM | Not reported |
| SAMN00006365 | HG00261 | Female | GBR | Not reported |
| SAMN00249781 | HG02025 | Female | KHV | Not reported |
| SAMN00249780 | HG02026 | Male | KHV | Not reported |
| SAMN01091010 | HG03722 | Female | ITU | Not reported |
| SAMN00006820 | HG00734 | Female | PUR | Not reported |
| SAMN01036816 | HG03123 | Female | ESN | Not reported |
| SAMN01090933 | HG03006 | Male | BEB | Not reported |
| SAMN00006465 | HG00512 | Male | CHS | Not reported |
| SAMN00630274 | HG02522 | Female | KHV | Not reported |
| SAMN01036707 | HG02635 | Female | GWD | Not reported |
| SAMN01036728 | HG02811 | Female | GWD | Not reported |
| SAMN00006445 | HG00428 | Female | CHS | Not reported |
| SAMN00006583 | HG00737 | Female | PUR | Not reported |
| SAMN00249868 | HG01756 | Male | IBS | Not reported |
| SAMN00009162 | HG01139 | Male | CLM | Not reported |
| SAMN00004627 | HG00101 | Male | GBR | Not reported |
| SAMN01090974 | HG03682 | Male | STU | Not reported |
| SAMN00009091 | HG00250 | Female | GBR | Not reported |
| SAMN00779990 | HG02490 | Male | PJL | Not reported |
| SAMN01036785 | HG03097 | Female | MSL | Not reported |
| SAMN01036792 | HG03469 | Male | MSL | Not reported |
| SAMN00249848 | HG01874 | Female | KHV | Not reported |
| SAMN01090941 | HG03796 | Female | BEB | Not reported |
| SAMN00249726 | HG01974 | Male | PEL | Not reported |
| SAMN00009168 | HG01167 | Male | PUR | Not reported |
| SAMN00006579 | HG00731 | Male | PUR | Not reported |
| SAMN00249727 | HG01973 | Female | PEL | Not reported |
| SAMN00009092 | HG00251 | Male | GBR | Not reported |
| SAMN01091009 | HG03725 | Male | ITU | Not reported |
| SAMN01036818 | HG03133 | Male | ESN | Not reported |
| SAMN00630218 | HG02309 | Female | ACB | Not reported |
| SAMN00006364 | HG00260 | Male | GBR | Not reported |
| SAMN00249723 | HG01970 | Male | PEL | Not reported |
| SAMN00009163 | HG01140 | Female | CLM | Not reported |
| SAMN00630209 | HG02108 | Female | ACB | Not reported |
| SAMN01036809 | HG03115 | Male | ESN | Not reported |
| SAMN01091014 | HG03721 | Female | ITU | Not reported |
| SAMN00779991 | HG02491 | Female | PJL | Not reported |
| SAMN00249735 | HG01991 | Male | PEL | Not reported |
| SAMN01090937 | HG03616 | Female | BEB | Not reported |
| SAMN01090768 | HG03470 | Female | MSL | Not reported |
| SAMN00249724 | HG01971 | Female | PEL | Not reported |
| SAMN00263032 | HG02250 | Male | CDX | Not reported |
| SAMN00004626 | HG00100 | Female | GBR | Not reported |
| SAMN00255137 | HG01784 | Female | IBS | Not reported |
| SAMN00779996 | HG02603 | Male | PJL | Not reported |
| SAMN01090975 | HG03684 | Female | STU | Not reported |
| SAMN01036789 | HG03452 | Female | MSL | Not reported |
| SAMN00009108 | HG00330 | Female | FIN | Not reported |
| SAMN01036810 | HG03114 | Female | ESN | Not reported |
| SAMN00006453 | HG00472 | Male | CHS | Not reported |
| SAMN01036788 | HG03451 | Male | MSL | Not reported |
| SAMN01096789 | HG03863 | Female | ITU | Not reported |
| SAMN00630206 | HG02095 | Female | ACB | Not reported |
| SAMN01036815 | HG03124 | Male | ESN | Not reported |
| SAMN00014344 | HG01464 | Male | CLM | Not reported |
| SAMN00249888 | HG00844 | Male | CDX | Not reported |
| SAMN00779954 | HG02594 | Male | GWD | Not reported |
| SAMN00014345 | HG01465 | Female | CLM | Not reported |
| SAMN00249872 | HG01762 | Female | IBS | Not reported |
| SAMN00779963 | HG02623 | Male | GWD | Not reported |
| SAMN00630207 | HG02332 | Male | ACB | Not reported |
| SAMN01090983 | HG03741 | Female | STU | Not reported |
| SAMN00249892 | HG00867 | Female | CDX | Not reported |
| SAMN00249871 | HG01761 | Male | IBS | Not reported |
| SAMN00249917 | HG01809 | Female | CDX | Not reported |
| SAMN01036784 | HG03096 | Male | MSL | Not reported |
| SAMN00630273 | HG02521 | Male | KHV | Not reported |
| SAMN00006404 | HG00351 | Male | FIN | Not reported |
| SAMN00009177 | HG01176 | Male | PUR | Not reported |
| SAMN00249736 | HG01992 | Female | PEL | Not reported |
| SAMN00249847 | HG01873 | Male | KHV | Not reported |
| SAMN01090994 | HG03838 | Female | STU | Not reported |
| SAMN01036727 | HG02810 | Male | GWD | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Optical mapping | Optical mapping | 16,431 |