nstd183 (DECIPHER Consensus CNVs)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Tomas Fitzgerald
- Submitter URL:
- https://decipher.sanger.ac.uk
- Submitter version:
- Feb 2020
- Description:
- This CNV consensus set represents common population CNVs with allele frequencies as displayed in the DECIPHER download file https://decipher.sanger.ac.uk/files/downloads/population_cnv.txt.gz. The set is comprised of a number of carefully selected, high resolution controls sets where frequency information is available. Data sets included are: 42 Million study (raw call lists and genotyped regions), WTCCC study (merged Affy6 data set), 1000 Genomes pilot (merged deletions and tandem duplications) and DDD study (national blood service controls and generation Scotland controls). See Variant Summary counts for nstd183 in dbVar Variant Summary.
Detailed Information: Download 55675 Variant Regions, Download 62074 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 4,375 | 4,932 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 4,392 | 4,840 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 3,220 | 3,556 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 3,405 | 3,776 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 3,188 | 3,558 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 3,257 | 3,580 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 3,193 | 3,521 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 2,876 | 3,163 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 2,592 | 2,901 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 2,530 | 2,792 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 2,684 | 2,950 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 2,590 | 2,840 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,746 | 1,918 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 1,866 | 2,071 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 1,923 | 2,237 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 2,256 | 2,561 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,974 | 2,271 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 1,336 | 1,462 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 2,045 | 2,372 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,188 | 1,295 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 669 | 766 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 1,113 | 1,258 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 910 | 996 | Remapped | NC_000023.11 |
| NT_187513.1 | Unplaced|NT_187513.1 | 3 | 3 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 6 | 7 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 1 | Remapped | NT_187364.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 10 | 12 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 9 | 10 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 10 | 12 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 19 | 24 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 21 | 25 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 2 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 19 | 24 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 3 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 10 | 10 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 2 | 3 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 2 | 3 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 8 | 9 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 16 | 16 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 29 | 38 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 1 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 12 | 12 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 6 | 6 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 14 | 16 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 26 | 33 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 3 | 4 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 18 | 21 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 6 | 6 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 2 | 3 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 17 | 21 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 1 | 1 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 4 | 5 | Remapped | NT_187525.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 14 | 18 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 17 | 25 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 16 | 19 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 4 | 4 | Remapped | NT_187530.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 2 | 2 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 17 | 21 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 9 | 11 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 2 | 2 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 1 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 6 | 7 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 6 | 6 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 31 | 40 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 3 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 2 | 2 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 2 | 2 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 24 | 34 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 24 | 34 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 25 | 35 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 24 | 34 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 24 | 34 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 25 | 35 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 5 | 6 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 3 | 3 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 8 | 11 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 13 | 15 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 4 | 4 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 23 | 27 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 24 | 34 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 1 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 3 | 3 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 2 | 2 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 1 | 1 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 9 | 10 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 2 | 2 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 3 | 3 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 5 | 5 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 9 | 9 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 6 | 7 | Remapped | NW_019805489.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 3 | 3 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 19 | 22 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 7 | 11 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 3 | 3 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 2 | 2 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 6 | 6 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 10 | 12 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 2 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 4 | 5 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 15 | 18 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 3 | 3 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 8 | 11 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 2 | 2 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 2 | 2 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 6 | 8 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 4 | 5 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 6 | 8 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 5 | 6 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 18 | 22 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 4 | 5 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 55 | 74 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 7 | 10 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 53 | 72 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 3 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 8 | 8 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 6 | 6 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 5 | 7 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 5 | 5 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 23 | 26 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 1 | 1 | Remapped | NW_018654712.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 1 | 1 | Remapped | NT_187692.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 3 | 3 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 14 | 16 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 2 | 3 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 14 | 17 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 4 | 4 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 1 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 7 | 8 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 6 | 6 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 4 | 4 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 3 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 8 | 9 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 25 | 27 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 8 | 8 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 8 | 9 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 9 | 12 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 52 | 62 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 5 | 8 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 3 | 3 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 27 | 29 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 3 | 4 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 3 | 3 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 8 | 8 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 12 | 16 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 11 | 14 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 7 | 7 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 15 | 17 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 22 | 25 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 7 | 8 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 13 | 19 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 10 | 12 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 3 | 3 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 50 | 65 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 18 | 20 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 4 | 4 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 5 | 7 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 5 | 5 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 71 | 78 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 13 | 14 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 23 | 27 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 4 | 5 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 3 | 3 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 4 | 5 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 17 | 19 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 230 | 270 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 3 | 4 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 3 | 5 | Remapped | NT_187578.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 3 | 4 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 3 | 3 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 4 | 5 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 12 | 16 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 2 | 2 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 11 | 12 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 5 | 5 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 1 | 1 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 13 | 13 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 5 | 5 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 6 | 6 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 22 | 28 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 9 | 9 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 14 | 16 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 8 | 8 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 5 | 5 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 24 | 28 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 12 | 12 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 8 | 8 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 7 | 7 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 18 | 18 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 4 | 5 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 8 | 8 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 12 | 12 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 2 | 2 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 10 | 12 | Remapped | NW_015148966.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 2 | 2 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 11 | 12 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 7 | 7 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 12 | 13 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 2 | 2 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 30 | 33 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 19 | 27 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 2 | 2 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 6 | 7 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 2 | 3 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 3 | 4 | Remapped | NT_187591.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 2 | 2 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 3 | 4 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 4 | 5 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 15 | 18 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 22 | 23 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 6 | 7 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 16 | 17 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 9 | 9 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 24 | 24 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 1 | 1 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 5 | 5 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 6 | 6 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 4 | 6 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 2 | 2 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 10 | 10 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 1 | 1 | Remapped | NT_187595.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 2 | 2 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 14 | 17 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 6 | 7 | Remapped | NW_011332699.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 3 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 5 | 6 | Remapped | NT_113796.3 |
| NT_187599.1 | Chr14|NT_187599.1 | 4 | 4 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 158 | 197 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 28 | 29 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 3 | 3 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 31 | 37 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 23 | 31 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 120 | 141 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 27 | 36 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 27 | 34 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 17 | 19 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 28 | 34 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 22 | 32 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 145 | 172 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 63 | 79 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 5 | 5 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 1 | 1 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 8 | 8 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 7 | 8 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 1 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 6 | 6 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 2 | 2 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 4 | 4 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 40 | 49 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 3 | 3 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 6 | 7 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 54 | 71 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 17 | 20 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 61 | 82 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 6 | 8 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 10 | 11 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 2 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 12 | 13 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 16 | 17 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 22 | 26 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 122 | 157 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 2 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 33 | 38 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 6 | 6 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 4 | 5 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 20 | 21 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 8 | 9 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 7 | 8 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 15 | 16 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 3 | 3 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 12 | 18 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 2 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 17 | 18 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 7 | 10 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 4 | 5 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 2 | 2 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 5 | 6 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 6 | 7 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 12 | 13 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 4 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 2 | 2 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 7 | 10 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 3 | 3 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 4 | 5 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 2 | 2 | Remapped | NW_018654724.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 3 | 3 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 140 | 177 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 72 | 92 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 44 | 54 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 44 | 54 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 44 | 54 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 83 | 104 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 44 | 54 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 58 | 74 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 2 | 2 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 7 | 9 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 8 | 8 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 4 | 5 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 14 | 15 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 8 | 8 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 8 | 10 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 6 | 6 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 94 | 119 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 29 | 33 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 11 | 11 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 3 | 5 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 7 | 9 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 3 | 3 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 5 | 6 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 3 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 4 | 5 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 8 | 9 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 12 | 16 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 6 | 7 | Remapped | NW_015148969.1 |
| NT_187386.1 | Chr22|NT_187386.1 | 1 | 2 | Remapped | NT_187386.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 16 | 19 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 2 | 2 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 9 | 10 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 35 | 45 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 5 | 5 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 11 | 12 | Remapped | NT_187667.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 11 | 12 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 3 | 3 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 10 | 14 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 4,456 | 5,039 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 4,399 | 4,849 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 3,219 | 3,555 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 3,405 | 3,776 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 3,188 | 3,558 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 3,264 | 3,587 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 3,208 | 3,540 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 2,889 | 3,179 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 2,611 | 2,930 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 2,541 | 2,811 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 2,688 | 2,954 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 2,594 | 2,846 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,751 | 1,926 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 1,875 | 2,083 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 1,936 | 2,253 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 2,257 | 2,563 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 2,018 | 2,325 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 1,337 | 1,463 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 2,103 | 2,445 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,190 | 1,297 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 669 | 766 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,153 | 1,314 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 924 | 1,015 | Submitted | NC_000023.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 4,456 | 3,955 | 208 | 59 | 38 | 196 | 5,039 | 4,433 | 242 | 81 | 52 | 231 |
| NC_000002.11 | Chr2 | 4,399 | 4,155 | 77 | 14 | 5 | 148 | 4,849 | 4,546 | 92 | 19 | 7 | 185 |
| NC_000003.11 | Chr3 | 3,219 | 3,049 | 41 | 2 | 0 | 127 | 3,555 | 3,359 | 43 | 3 | 0 | 150 |
| NC_000004.11 | Chr4 | 3,405 | 3,287 | 45 | 2 | 0 | 71 | 3,776 | 3,629 | 58 | 2 | 0 | 87 |
| NC_000005.9 | Chr5 | 3,188 | 3,004 | 22 | 1 | 0 | 161 | 3,558 | 3,334 | 24 | 1 | 0 | 199 |
| NC_000006.11 | Chr6 | 3,264 | 3,139 | 40 | 11 | 6 | 68 | 3,587 | 3,448 | 43 | 13 | 6 | 77 |
| NC_000007.13 | Chr7 | 3,208 | 2,935 | 96 | 18 | 9 | 150 | 3,540 | 3,216 | 115 | 23 | 11 | 175 |
| NC_000008.10 | Chr8 | 2,889 | 2,398 | 28 | 7 | 2 | 454 | 3,179 | 2,611 | 29 | 10 | 2 | 527 |
| NC_000009.11 | Chr9 | 2,611 | 2,462 | 43 | 47 | 18 | 41 | 2,930 | 2,733 | 55 | 64 | 26 | 52 |
| NC_000010.10 | Chr10 | 2,541 | 2,379 | 52 | 38 | 11 | 61 | 2,811 | 2,609 | 63 | 53 | 19 | 67 |
| NC_000011.9 | Chr11 | 2,688 | 2,504 | 38 | 7 | 4 | 135 | 2,954 | 2,759 | 40 | 7 | 4 | 144 |
| NC_000012.11 | Chr12 | 2,594 | 2,423 | 12 | 2 | 2 | 155 | 2,846 | 2,650 | 14 | 2 | 4 | 176 |
| NC_000013.10 | Chr13 | 1,751 | 1,696 | 9 | 6 | 5 | 35 | 1,926 | 1,861 | 9 | 7 | 8 | 41 |
| NC_000014.8 | Chr14 | 1,875 | 1,545 | 75 | 23 | 8 | 224 | 2,083 | 1,685 | 87 | 30 | 11 | 270 |
| NC_000015.9 | Chr15 | 1,936 | 1,640 | 40 | 17 | 1 | 238 | 2,253 | 1,887 | 51 | 26 | 2 | 287 |
| NC_000016.9 | Chr16 | 2,257 | 2,078 | 17 | 14 | 1 | 147 | 2,563 | 2,344 | 19 | 24 | 2 | 174 |
| NC_000017.10 | Chr17 | 2,018 | 1,635 | 27 | 19 | 4 | 333 | 2,325 | 1,864 | 31 | 22 | 4 | 404 |
| NC_000018.9 | Chr18 | 1,337 | 1,260 | 14 | 3 | 1 | 59 | 1,463 | 1,375 | 15 | 4 | 1 | 68 |
| NC_000019.9 | Chr19 | 2,103 | 1,866 | 41 | 8 | 1 | 187 | 2,445 | 2,160 | 52 | 9 | 1 | 223 |
| NC_000020.10 | Chr20 | 1,190 | 1,160 | 12 | 2 | 3 | 13 | 1,297 | 1,259 | 13 | 4 | 4 | 17 |
| NC_000021.8 | Chr21 | 669 | 597 | 43 | 2 | 0 | 27 | 766 | 684 | 46 | 4 | 0 | 32 |
| NC_000022.10 | Chr22 | 1,153 | 963 | 101 | 16 | 15 | 58 | 1,314 | 1,081 | 116 | 24 | 24 | 69 |
| NC_000023.10 | ChrX | 924 | 815 | 68 | 13 | 14 | 14 | 1,015 | 887 | 74 | 20 | 19 | 15 |
Samplesets
Number of Samplesets: 1
- Name:
- CNV_consensus_set_DECIPHER
- Size:
- 0 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
| Experiment ID | Type | Data Source | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | 1G del genotyped | Curated | Curated | 14,130 |
| 2 | Discovery | 42M calls | Curated | Curated | 12,151 |
| 3 | Discovery | 42M genotyped | Curated | Curated | 4,637 |
| 4 | Discovery | Affy6 | Curated | Curated | 11,936 |
| 5 | Discovery | Controls_DDD_custom_2Marray | Curated | Curated | 19,220 |