nstd21 (Shaikh et al. 2009)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Joseph Glessner
- Submitter URL:
- https://caglab.org
- Description:
- We present a database of copy number variations (CNVs) detected in 2,026 disease-free individuals, using high-density, SNP-based oligonucleotide microarrays. This large cohort analyzed for CNVs in a single study using a uniform array platform and computational tools, comprises mainly of Caucasians (65.2%) and African-Americans (34.2%), We have catalogued and characterized 54,462 individual CNVs, 77.8% of which were identified in multiple unrelated individuals. These non-unique CNVs mapped to 3,272 distinct regions of genomic variation spanning 5.9% of the genome; 51.5% of these were previously unreported, and >85% are rare. See Variant Summary counts for nstd21 in dbVar Variant Summary.
- Publication(s):
- Shaikh et al. 2009
- dbGaP:
- Subjects in this study are not consented to be included in a public DNA archive. To gain access to subject level data, see dbGaP.
- dbGaP Release Date:
- 2009-10-27
Detailed Information: Download 13566 Variant Regions, Download 54462 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 962 | 3,332 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,041 | 4,581 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 823 | 4,127 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 711 | 3,698 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 724 | 2,962 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 774 | 3,733 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 827 | 3,087 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 788 | 4,094 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 663 | 2,034 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 655 | 2,907 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 678 | 2,974 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 594 | 2,188 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 460 | 1,447 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 457 | 1,614 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 388 | 1,690 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 493 | 1,638 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 414 | 1,328 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 381 | 1,324 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 303 | 1,495 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 313 | 1,072 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 188 | 729 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 224 | 742 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 700 | 1,528 | Remapped | NC_000023.11 |
| NT_187516.1 | Chr1|NT_187516.1 | 5 | 77 | Remapped | NT_187516.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 2 | Remapped | NT_187519.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 1 | 13 | Remapped | NW_003315905.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 1 | 1 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 4 | 16 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 2 | 6 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 0 | 75 | Remapped | NW_012132914.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 2 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 3 | 3 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 4 | 4 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 2 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 0 | 1 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 1 | 3 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 0 | 86 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 2 | Remapped | NT_187525.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 1 | 1 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 3 | 3 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 0 | 86 | Remapped | NT_187647.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 3 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 1 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 2 | 2 | Remapped | NW_011332690.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 3 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 3 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 3 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 0 | 3 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 0 | 3 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 0 | 3 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 0 | 3 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 0 | 3 | Remapped | NT_187532.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 3 | 10 | Remapped | NT_187538.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 0 | 3 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 2 | 3 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 2 | 4 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 2 | 3 | Remapped | NW_012132916.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 3 | 7 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 62 | Remapped | NW_019805488.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 3 | Remapped | NW_019805490.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 0 | 6 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 3 | 3 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 1 | 1 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 2 | 2 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 20 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 0 | 1 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 3 | 3 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 0 | 1 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 3 | 149 | Remapped | NW_003315915.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 2 | 13 | Remapped | NW_013171801.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 26 | Remapped | NT_187546.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 1 | 1 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 1 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 2 | 26 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 1 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 8 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 2 | 2 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 4 | 5 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 70 | 516 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 63 | 420 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 67 | 504 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 58 | 503 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 68 | 236 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 70 | 518 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 30 | 84 | Remapped | NT_167244.2 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 1 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 2 | 2 | Remapped | NT_187553.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 5 | 10 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 1 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 1 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 3 | 17 | Remapped | NW_009646200.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 3 | 5 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 4 | 34 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 1 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 0 | 1 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 12 | 419 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 2 | 2 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 3 | 8 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 4 | 34 | Remapped | NT_187653.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 4 | 44 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 5 | 7 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 2 | 7 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 3 | 3 | Remapped | NT_187565.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 8 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 1 | 5 | Remapped | NT_187568.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 2 | 35 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 2 | 2 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 16 | 134 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 4 | 12 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 6 | Remapped | NT_187654.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 0 | 1 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 52 | 146 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 2 | 2 | Remapped | NW_019805494.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 9 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 2 | 11 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 3 | 11 | Remapped | NW_013171804.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 10 | Remapped | NW_003315934.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 3 | 8 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 1 | 1 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 1 | 1 | Remapped | NT_187681.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 1 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 6 | 9 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 2 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 1 | 1 | Remapped | NT_187584.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 2 | 2 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 8 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 4 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 1 | 8 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 2 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 1 | 1 | Remapped | NW_015148966.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 3 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 12 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 49 | Remapped | NT_187587.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 1 | 1 | Remapped | NT_187590.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 1 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 0 | 9 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 3 | 3 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 1 | 4 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 2 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 7 | 79 | Remapped | NW_011332696.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 2 | 10 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 12 | 89 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 12 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 2 | 3 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 1 | 1 | Remapped | NT_187593.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 5 | 5 | Remapped | NW_011332698.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 1 | 1 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 1 | Remapped | NW_013171810.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 3 | 27 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 8 | 51 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 5 | 14 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 0 | 2 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 16 | 85 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 0 | 14 | Remapped | NT_187603.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 3 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 16 | 96 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 2 | 53 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 2 | 4 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 1 | 1 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 2 | 2 | Remapped | NT_187610.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 2 | 2 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 2 | 3 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 5 | 20 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 5 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 1 | 1 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 4 | 12 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 4 | 16 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 2 | 2 | Remapped | NT_187664.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 2 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 3 | 28 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 3 | 3 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 6 | 12 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 14 | 38 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 2 | 6 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 4 | 43 | Remapped | NW_003315953.2 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 7 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 1 | 1 | Remapped | NW_003871091.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 2 | 2 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 6 | 7 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 1 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 1 | 1 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 1 | 1 | Remapped | NT_187665.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 43 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 8 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 1 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 2 | 6 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 4 | 9 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 3 | 26 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 11 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 12 | 267 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 8 | 14 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 2 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 2 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 2 | 4 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 10 | 128 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 2 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 3 | 5 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 4 | 6 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 2 | 16 | Remapped | NT_187621.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 4 | 47 | Remapped | NW_003315962.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 3 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 10 | 128 | Remapped | NW_003571054.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 1 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 2 | 2 | Remapped | NT_187624.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 1 | 5 | Remapped | NT_187627.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 80 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 2 | 2 | Remapped | NW_003315970.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 3 | 5 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 2 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 1 | 5 | Remapped | NT_187633.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 2 | 2 | Remapped | NW_017363820.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 2 | Remapped | NT_187635.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 963 | 3,394 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,041 | 4,582 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 823 | 4,127 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 711 | 3,698 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 724 | 2,962 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 775 | 3,734 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 825 | 3,038 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 788 | 4,094 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 663 | 2,034 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 655 | 2,907 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 678 | 3,010 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 593 | 2,184 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 460 | 1,447 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 457 | 1,614 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 388 | 1,690 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 493 | 1,570 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 413 | 1,320 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 381 | 1,324 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 301 | 1,491 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 313 | 1,072 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 188 | 729 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 224 | 742 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 698 | 1,521 | Remapped | NC_000023.10 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 1 | 13 | Remapped | NW_003315905.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 1 | 1 | Remapped | NW_003315907.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 2 | 243 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 2 | 4 | Remapped | NW_003871056.3 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 3 | Remapped | NW_003315909.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 4 | 4 | Remapped | NW_004504299.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 2 | 2 | Remapped | NW_003871058.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 2 | 3 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 1 | 9 | Remapped | NW_004775426.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 3 | 3 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 3 | 149 | Remapped | NW_003315915.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 4 | 19 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 1 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 8 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 2 | 2 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 3 | 15 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 70 | 518 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 29 | 83 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 68 | 236 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 70 | 516 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 63 | 420 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 67 | 504 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 58 | 503 | Remapped | NT_167249.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 5 | 46 | Remapped | NW_003871063.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 1 | 1 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 4 | 8 | Remapped | NW_004504300.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 0 | 4 | Remapped | NW_003571038.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 14 | 422 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 10 | 31 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 2 | 8 | Remapped | NW_003871065.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 1 | 19 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 0 | 1 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 9 | 98 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 2 | 11 | Remapped | NW_003315925.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 9 | Remapped | NW_003315931.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 1 | 4 | Remapped | NW_004070869.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 1 | 1 | Remapped | NW_003315933.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 10 | Remapped | NW_003315934.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 4 | 198 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 2 | 2 | Remapped | NW_003871071.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 2 | 5 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 4 | 6 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 8 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 0 | 1 | Remapped | NW_003571045.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 1 | 1 | Remapped | NW_003871072.2 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 4 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 8 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 1 | 2 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 3 | 13 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 1 | 1 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 2 | 3 | Remapped | NW_004070871.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 1 | 1 | Remapped | NW_003315939.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 0 | 9 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 3 | 3 | Remapped | NW_003315941.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 1 | 4 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 2 | 14 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 1 | 1 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 1 | 4 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 3 | 35 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 3 | Remapped | NW_003315944.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 4 | 4 | Remapped | NW_003871085.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 3 | 14 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 1 | 1 | Remapped | NW_003315947.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 5 | 22 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 2 | 13 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 4 | 43 | Remapped | NW_003315953.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 7 | Remapped | NW_003315955.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 0 | 43 | Remapped | NW_003871086.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 1 | 2 | Remapped | NW_003871090.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 1 | 1 | Remapped | NW_003871091.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 2 | 6 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 1 | 3 | Remapped | NW_004166864.2 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 43 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 0 | 5 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 1 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 2 | 6 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 4 | 47 | Remapped | NW_003315962.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 3 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 5 | 232 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 3 | Remapped | NW_003571060.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 139 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 4 | 6 | Remapped | NW_004775434.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 80 | Remapped | NW_003315968.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 2 | 2 | Remapped | NW_003315970.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 2 | 4 | Remapped | NW_004775435.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 3 | 8 | Remapped | NW_003871098.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 2 | 10 | Remapped | NW_003871100.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 18 | 49 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 6 | 13 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 8 | 18 | Remapped | NW_004070878.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 8 | 47 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 1 | 1 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 1 | 1 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 2 | 2 | Remapped | NW_004070883.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 1 | 6 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 1 | 1 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 8 | 20 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 3 | 24 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 7 | 8 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 51 | 91 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 8 | 15 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 11 | 14 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 2 | 5 | Remapped | NW_004070893.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 963 | 3,394 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 1,041 | 4,582 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 823 | 4,127 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 711 | 3,698 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 724 | 2,962 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 775 | 3,734 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 828 | 3,053 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 788 | 4,094 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 663 | 2,035 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 655 | 2,907 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 678 | 3,010 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 594 | 2,188 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 460 | 1,447 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 457 | 1,614 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 388 | 1,690 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 493 | 1,570 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 415 | 1,329 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 381 | 1,324 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 304 | 1,633 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 313 | 1,072 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 188 | 729 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 224 | 742 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 700 | 1,528 | Submitted | NC_000023.8 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 963 | 952 | 2 | 4 | 0 | 5 | 3,394 | 3,065 | 16 | 53 | 0 | 260 |
| NC_000002.9 | Chr2 | 1,041 | 1,024 | 6 | 5 | 0 | 6 | 4,582 | 4,450 | 33 | 91 | 0 | 8 |
| NC_000003.9 | Chr3 | 823 | 815 | 1 | 2 | 0 | 5 | 4,127 | 4,105 | 5 | 3 | 0 | 14 |
| NC_000004.9 | Chr4 | 711 | 688 | 10 | 3 | 0 | 10 | 3,698 | 3,494 | 23 | 10 | 0 | 171 |
| NC_000005.8 | Chr5 | 724 | 711 | 3 | 3 | 0 | 7 | 2,962 | 2,917 | 15 | 4 | 0 | 26 |
| NC_000006.9 | Chr6 | 775 | 699 | 1 | 0 | 0 | 75 | 3,734 | 3,206 | 1 | 0 | 0 | 527 |
| NC_000007.11 | Chr7 | 828 | 796 | 6 | 3 | 0 | 23 | 3,053 | 2,582 | 18 | 3 | 0 | 450 |
| NC_000008.9 | Chr8 | 788 | 762 | 14 | 1 | 0 | 11 | 4,094 | 3,946 | 25 | 4 | 0 | 119 |
| NC_000009.9 | Chr9 | 663 | 654 | 1 | 2 | 0 | 6 | 2,035 | 2,003 | 1 | 4 | 1 | 26 |
| NC_000010.8 | Chr10 | 655 | 635 | 3 | 3 | 0 | 14 | 2,907 | 2,658 | 6 | 21 | 0 | 222 |
| NC_000011.8 | Chr11 | 678 | 662 | 2 | 1 | 0 | 13 | 3,010 | 2,918 | 9 | 40 | 0 | 43 |
| NC_000012.9 | Chr12 | 594 | 580 | 1 | 5 | 0 | 8 | 2,188 | 2,143 | 1 | 15 | 0 | 29 |
| NC_000013.9 | Chr13 | 460 | 458 | 0 | 1 | 0 | 1 | 1,447 | 1,442 | 0 | 1 | 0 | 4 |
| NC_000014.7 | Chr14 | 457 | 454 | 0 | 0 | 0 | 3 | 1,614 | 1,570 | 0 | 9 | 0 | 35 |
| NC_000015.8 | Chr15 | 388 | 381 | 4 | 2 | 0 | 1 | 1,690 | 1,630 | 18 | 39 | 0 | 3 |
| NC_000016.8 | Chr16 | 493 | 486 | 1 | 1 | 0 | 5 | 1,570 | 1,563 | 1 | 1 | 0 | 5 |
| NC_000017.9 | Chr17 | 415 | 387 | 4 | 5 | 0 | 19 | 1,329 | 1,154 | 13 | 16 | 0 | 146 |
| NC_000018.8 | Chr18 | 381 | 372 | 0 | 2 | 0 | 7 | 1,324 | 1,266 | 0 | 2 | 0 | 56 |
| NC_000019.8 | Chr19 | 304 | 283 | 5 | 2 | 0 | 14 | 1,633 | 1,193 | 145 | 7 | 0 | 288 |
| NC_000020.9 | Chr20 | 313 | 311 | 2 | 0 | 0 | 0 | 1,072 | 1,057 | 15 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 188 | 183 | 0 | 0 | 0 | 5 | 729 | 643 | 0 | 0 | 0 | 86 |
| NC_000022.8 | Chr22 | 224 | 221 | 1 | 2 | 0 | 0 | 742 | 739 | 1 | 2 | 0 | 0 |
| NC_000023.8 | ChrX | 700 | 548 | 6 | 5 | 1 | 140 | 1,528 | 1,169 | 10 | 11 | 6 | 332 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 963 | 914 | 15 | 5 | 1 | 28 | 3,394 | 2,859 | 219 | 29 | 14 | 273 |
| NC_000002.9 | Chr2 | 1,041 | 1,004 | 19 | 2 | 0 | 16 | 4,582 | 4,168 | 226 | 79 | 1 | 108 |
| NC_000003.9 | Chr3 | 823 | 794 | 12 | 1 | 0 | 16 | 4,127 | 3,997 | 31 | 3 | 0 | 96 |
| NC_000004.9 | Chr4 | 711 | 680 | 13 | 2 | 0 | 16 | 3,698 | 3,413 | 80 | 7 | 0 | 198 |
| NC_000005.8 | Chr5 | 724 | 693 | 15 | 2 | 0 | 14 | 2,962 | 2,811 | 102 | 3 | 0 | 46 |
| NC_000006.9 | Chr6 | 775 | 680 | 5 | 2 | 1 | 87 | 3,734 | 3,166 | 7 | 4 | 1 | 556 |
| NC_000007.11 | Chr7 | 828 | 762 | 31 | 2 | 0 | 33 | 3,053 | 2,408 | 157 | 3 | 0 | 485 |
| NC_000008.9 | Chr8 | 788 | 679 | 20 | 1 | 0 | 88 | 4,094 | 3,697 | 30 | 10 | 0 | 357 |
| NC_000009.9 | Chr9 | 663 | 652 | 1 | 2 | 0 | 8 | 2,035 | 1,996 | 1 | 4 | 1 | 33 |
| NC_000010.8 | Chr10 | 655 | 636 | 9 | 5 | 0 | 5 | 2,907 | 2,756 | 16 | 116 | 0 | 19 |
| NC_000011.8 | Chr11 | 678 | 645 | 15 | 1 | 0 | 17 | 3,010 | 2,820 | 115 | 0 | 36 | 39 |
| NC_000012.9 | Chr12 | 594 | 550 | 6 | 3 | 0 | 35 | 2,188 | 1,907 | 6 | 3 | 0 | 272 |
| NC_000013.9 | Chr13 | 460 | 449 | 1 | 0 | 0 | 10 | 1,447 | 1,435 | 1 | 0 | 0 | 11 |
| NC_000014.7 | Chr14 | 457 | 411 | 29 | 0 | 0 | 17 | 1,614 | 1,446 | 70 | 5 | 0 | 93 |
| NC_000015.8 | Chr15 | 388 | 363 | 6 | 2 | 0 | 17 | 1,690 | 1,514 | 28 | 35 | 0 | 113 |
| NC_000016.8 | Chr16 | 493 | 466 | 6 | 2 | 0 | 19 | 1,570 | 1,463 | 13 | 2 | 0 | 92 |
| NC_000017.9 | Chr17 | 415 | 353 | 11 | 3 | 0 | 48 | 1,329 | 1,078 | 82 | 4 | 0 | 165 |
| NC_000018.8 | Chr18 | 381 | 358 | 3 | 2 | 0 | 18 | 1,324 | 1,212 | 3 | 2 | 0 | 107 |
| NC_000019.8 | Chr19 | 304 | 257 | 25 | 0 | 0 | 22 | 1,633 | 1,370 | 61 | 1 | 0 | 201 |
| NC_000020.9 | Chr20 | 313 | 296 | 14 | 0 | 0 | 3 | 1,072 | 1,034 | 35 | 0 | 0 | 3 |
| NC_000021.7 | Chr21 | 188 | 167 | 17 | 0 | 0 | 4 | 729 | 601 | 41 | 0 | 0 | 87 |
| NC_000022.8 | Chr22 | 224 | 185 | 27 | 3 | 0 | 9 | 742 | 552 | 167 | 8 | 0 | 15 |
| NC_000023.8 | ChrX | 700 | 572 | 108 | 17 | 0 | 3 | 1,528 | 1,253 | 236 | 35 | 0 | 4 |
Samplesets
Number of Samplesets: 10
- Sampleset ID:
- 1
- Name:
- all_samples
- Size:
- 2,026
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
| Sample ID | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|
| 1 | 1 | Male | health |
| 10 | 10 | Female | health |
| 100 | 100 | Female | health |
| 101 | 101 | Female | health |
| 102 | 102 | Female | health |
| 103 | 103 | Male | health |
| 104 | 104 | Male | health |
| 105 | 105 | Female | health |
| 106 | 106 | Female | health |
| 107 | 107 | Female | health |
| 108 | 108 | Female | health |
| 1000 | 1000 | Female | health |
| 1001 | 1001 | Female | health |
| 1002 | 1002 | Male | health |
| 1003 | 1003 | Male | health |
| 1004 | 1004 | Female | health |
| 1005 | 1005 | Female | health |
| 1006 | 1006 | Male | health |
| 1007 | 1007 | Female | health |
| 1008 | 1008 | Male | health |
| 1009 | 1009 | Female | health |
| 1010 | 1010 | Female | health |
| 1011 | 1011 | Male | health |
| 1012 | 1012 | Female | health |
| 1013 | 1013 | Male | health |
| 1014 | 1014 | Female | health |
| 1015 | 1015 | Male | health |
| 1016 | 1016 | Male | health |
| 1017 | 1017 | Male | health |
| 1018 | 1018 | Female | health |
| 1019 | 1019 | Female | health |
| 1020 | 1020 | Female | health |
| 1021 | 1021 | Female | health |
| 1022 | 1022 | Male | health |
| 1023 | 1023 | Female | health |
| 1024 | 1024 | Male | health |
| 1025 | 1025 | Female | health |
| 1026 | 1026 | Male | health |
| 1027 | 1027 | Female | health |
| 1028 | 1028 | Female | health |
| 1029 | 1029 | Female | health |
| 1030 | 1030 | Female | health |
| 1031 | 1031 | Female | health |
| 1032 | 1032 | Female | health |
| 1033 | 1033 | Male | health |
| 1034 | 1034 | Male | health |
| 1035 | 1035 | Male | health |
| 1036 | 1036 | Female | health |
| 1037 | 1037 | Male | health |
| 1038 | 1038 | Male | health |
| 1039 | 1039 | Male | health |
| 1040 | 1040 | Male | health |
| 1041 | 1041 | Female | health |
| 1042 | 1042 | Male | health |
| 1043 | 1043 | Female | health |
| 1044 | 1044 | Female | health |
| 1045 | 1045 | Male | health |
| 1046 | 1046 | Female | health |
| 1047 | 1047 | Female | health |
| 1048 | 1048 | Female | health |
| 1049 | 1049 | Female | health |
| 1050 | 1050 | Male | health |
| 1051 | 1051 | Female | health |
| 1052 | 1052 | Male | health |
| 1053 | 1053 | Male | health |
| 1054 | 1054 | Female | health |
| 1055 | 1055 | Male | health |
| 1056 | 1056 | Male | health |
| 1057 | 1057 | Female | health |
| 1058 | 1058 | Male | health |
| 1059 | 1059 | Male | health |
| 1060 | 1060 | Female | health |
| 1061 | 1061 | Male | health |
| 1062 | 1062 | Female | health |
| 1063 | 1063 | Female | health |
| 1064 | 1064 | Male | health |
| 1065 | 1065 | Female | health |
| 1066 | 1066 | Male | health |
| 1067 | 1067 | Male | health |
| 1068 | 1068 | Male | health |
| 1069 | 1069 | Male | health |
| 1070 | 1070 | Male | health |
| 1071 | 1071 | Female | health |
| 1072 | 1072 | Female | health |
| 1073 | 1073 | Male | health |
| 1074 | 1074 | Male | health |
| 1075 | 1075 | Male | health |
| 1076 | 1076 | Female | health |
| 1077 | 1077 | Female | health |
| 1078 | 1078 | Female | health |
| 1079 | 1079 | Male | health |
| 1080 | 1080 | Male | health |
| 1081 | 1081 | Female | health |
| 1082 | 1082 | Female | health |
| 1083 | 1083 | Male | health |
| 1084 | 1084 | Female | health |
| 1085 | 1085 | Male | health |
| 1086 | 1086 | Male | health |
| 1087 | 1087 | Female | health |
| 1088 | 1088 | Male | health |
- Sampleset ID:
- 2
- Name:
- all_African
- Size:
- 694 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sampleset ID:
- 3
- Name:
- all_Asian
- Size:
- 12 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sampleset ID:
- 4
- Name:
- all_Caucasian
- Size:
- 1,320 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sampleset ID:
- 5
- Name:
- female_African
- Size:
- 364 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Female
- Sampleset ID:
- 6
- Name:
- male_African
- Size:
- 330 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Male
- Sampleset ID:
- 7
- Name:
- female_Asian
- Size:
- 9 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Female
- Sampleset ID:
- 8
- Name:
- male_Asian
- Size:
- 3 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Male
- Sampleset ID:
- 9
- Name:
- female_Caucasian
- Size:
- 731 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Female
- Sampleset ID:
- 10
- Name:
- male_Caucasian
- Size:
- 589 (sample data available via dbGaP)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
- Sex:
- Male