nstd215 (Prakrithi et al. 2022)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Khushboo Singhal
- Description:
- Actively retrotransposing primate-specific Alu repeats display insertion-deletion (InDel) polymorphism through their insertion at new loci. In the global datasets, Indian populations remain underrepresented and so do their Alu InDels. Here, we report the genomic landscape of Alu InDels from the recently released 1,021 Indian Genomes (IndiGen) (Available at [https://clingen.igib.res.in/indigen]). We identified 22,098 polymorphic Alu insertions using the MELT-SPLIT pipeline. We analysed the 9,239 polymorphic Alu insertions after stringent QC filters that include private (3,831), rare (3,974), and common (1,434) insertions with an average of 770 insertions per individual. See Variant Summary counts for nstd215 in dbVar Variant Summary.
- Publication(s):
- Prakrithi et al. 2022
Detailed Information: Download 21981 Variant Regions, Download 21981 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38.p9 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,706 | 1,706 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,892 | 1,892 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 1,611 | 1,611 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 1,563 | 1,563 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 1,488 | 1,488 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 1,455 | 1,455 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 1,235 | 1,235 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 1,138 | 1,138 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 890 | 890 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 1,002 | 1,002 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 985 | 985 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 1,034 | 1,034 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 905 | 905 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 707 | 707 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 649 | 649 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 509 | 509 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 552 | 552 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 623 | 623 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 346 | 346 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 406 | 406 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 307 | 307 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 244 | 244 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 682 | 682 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 41 | 41 | Submitted | NC_000024.10 |
| KI270905.1 | Chr15|KI270905.1 | 1 | 1 | Submitted | KI270905.1 |
| GL000253.2 | Chr6|GL000253.2 | 1 | 1 | Submitted | GL000253.2 |
| GL000254.2 | Chr6|GL000254.2 | 2 | 2 | Submitted | GL000254.2 |
| GL000255.2 | Chr6|GL000255.2 | 2 | 2 | Submitted | GL000255.2 |
| GL000252.2 | Chr6|GL000252.2 | 1 | 1 | Submitted | GL000252.2 |
| GL000251.2 | Chr6|GL000251.2 | 1 | 1 | Submitted | GL000251.2 |
| KI270846.1 | Chr14|KI270846.1 | 1 | 1 | Submitted | KI270846.1 |
| KI270857.1 | Chr17|KI270857.1 | 1 | 1 | Submitted | KI270857.1 |
| KI270938.1 | Chr19|KI270938.1 | 1 | 1 | Submitted | KI270938.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 1,670 | 1,670 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,889 | 1,889 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 1,605 | 1,605 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 1,566 | 1,566 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 1,486 | 1,486 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 1,447 | 1,447 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 1,229 | 1,229 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 1,136 | 1,136 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 894 | 894 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 985 | 985 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 983 | 983 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 1,031 | 1,031 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 889 | 889 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 702 | 702 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 649 | 649 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 509 | 509 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 537 | 537 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 622 | 622 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 333 | 333 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 388 | 388 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 294 | 294 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 229 | 229 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 680 | 680 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 41 | 41 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 3 | 3 | Remapped | NT_113923.1 |
| NT_167215.1 | Unplaced|NT_167215.1 | 1 | 1 | Remapped | NT_167215.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 1 | 1 | Remapped | NT_167225.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 3 | 3 | Remapped | NT_167226.1 |
| NT_167231.1 | Unplaced|NT_167231.1 | 1 | 1 | Remapped | NT_167231.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 7 | 7 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 1 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 1 | 1 | Remapped | NW_003315904.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 34 | 34 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 10 | 10 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 12 | 12 | Remapped | NW_003871057.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 3 | 3 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 3 | 3 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 7 | 7 | Remapped | NW_004504299.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 1 | 1 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 1 | 1 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 1 | 1 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 2 | 2 | Remapped | NW_003871059.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 2 | 2 | Remapped | NT_113885.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 4 | 4 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 3 | 3 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 6 | 6 | Remapped | NW_004775427.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 1 | 1 | Remapped | NT_113948.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 5 | 5 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 4 | 4 | Remapped | NW_004775428.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 1 | 1 | Remapped | NT_167249.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 2 | 2 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 3 | 3 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 4 | 4 | Remapped | NW_004504300.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 1 | 1 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 3 | 3 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 1 | 1 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 6 | 6 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 1 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 13 | 13 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 5 | 5 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 1 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 2 | 2 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 1 | 1 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 1 | 1 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NT_113914.1 | Chr9|NT_113914.1 | 1 | 1 | Remapped | NT_113914.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 1 | Remapped | NW_003871067.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 1 | 1 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 3 | 3 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 1 | 1 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 10 | 10 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 1 | 1 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 1 | 1 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 2 | 2 | Remapped | NW_003871071.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 4 | 4 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 16 | 16 | Remapped | NW_004775432.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 4 | 4 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 2 | 2 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 4 | 4 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 1 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 1 | 1 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 2 | 2 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 2 | 2 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 1 | 1 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 3 | 3 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 2 | 2 | Remapped | NW_004070871.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 2 | 2 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 2 | 2 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 1 | 1 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 1 | 1 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 5 | 5 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 1 | 1 | Remapped | NW_003871084.1 |
| NT_113941.1 | Chr17|NT_113941.1 | 1 | 1 | Remapped | NT_113941.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 1 | 1 | Remapped | NW_003315947.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 4 | 4 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 4 | 4 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 5 | 5 | Remapped | NW_003571052.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 2 | 2 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 2 | 2 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 1 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 2 | 2 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 6 | 6 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 3 | 3 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 3 | 3 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 12 | 12 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 4 | 4 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 1 | 1 | Remapped | NW_003571063.2 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 4 | 4 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 2 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 2 | 2 | Remapped | NW_004775435.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 3 | 3 | Remapped | NW_003871096.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 1 | 1 | Remapped | NT_167212.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 1 | 1 | Remapped | NT_167235.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 3 | 3 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 3 | 3 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 1 | 1 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 4 | 4 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 1 | 1 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 1 | 1 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 9 | 9 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 17 | 17 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 7 | 7 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 5 | 5 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 8 | 8 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 2 | 2 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 6 | 6 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 1 | 1 | Remapped | NW_004070883.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 2 | 2 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 1 | 1 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 2 | 2 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 4 | 4 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 13 | 13 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 24 | 24 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 8 | 8 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 5 | 5 | Remapped | NW_004070892.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| KI270905.1 | Chr15|KI270905.1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| NC_000001.11 | Chr1 | 1,706 | 1,646 | 0 | 0 | 16 | 44 | 1,706 | 1,646 | 0 | 0 | 16 | 44 |
| NC_000002.12 | Chr2 | 1,892 | 1,878 | 0 | 0 | 1 | 13 | 1,892 | 1,878 | 0 | 0 | 1 | 13 |
| NC_000003.12 | Chr3 | 1,611 | 1,605 | 0 | 0 | 3 | 3 | 1,611 | 1,605 | 0 | 0 | 3 | 3 |
| NC_000004.12 | Chr4 | 1,563 | 1,554 | 0 | 0 | 0 | 9 | 1,563 | 1,554 | 0 | 0 | 0 | 9 |
| NC_000005.10 | Chr5 | 1,488 | 1,478 | 0 | 0 | 1 | 9 | 1,488 | 1,478 | 0 | 0 | 1 | 9 |
| NC_000006.12 | Chr6 | 1,455 | 1,435 | 0 | 0 | 10 | 10 | 1,455 | 1,435 | 0 | 0 | 10 | 10 |
| NC_000007.14 | Chr7 | 1,235 | 1,210 | 0 | 0 | 1 | 24 | 1,235 | 1,210 | 0 | 0 | 1 | 24 |
| NC_000008.11 | Chr8 | 1,138 | 1,135 | 0 | 0 | 0 | 3 | 1,138 | 1,135 | 0 | 0 | 0 | 3 |
| NC_000009.12 | Chr9 | 890 | 887 | 0 | 0 | 1 | 2 | 890 | 887 | 0 | 0 | 1 | 2 |
| NC_000010.11 | Chr10 | 1,002 | 965 | 0 | 0 | 6 | 31 | 1,002 | 965 | 0 | 0 | 6 | 31 |
| NC_000011.10 | Chr11 | 985 | 963 | 0 | 0 | 1 | 21 | 985 | 963 | 0 | 0 | 1 | 21 |
| NC_000012.12 | Chr12 | 1,034 | 1,026 | 0 | 0 | 3 | 5 | 1,034 | 1,026 | 0 | 0 | 3 | 5 |
| NC_000013.11 | Chr13 | 905 | 891 | 0 | 0 | 13 | 1 | 905 | 891 | 0 | 0 | 13 | 1 |
| NC_000014.9 | Chr14 | 707 | 705 | 0 | 0 | 1 | 1 | 707 | 705 | 0 | 0 | 1 | 1 |
| NC_000015.10 | Chr15 | 649 | 648 | 0 | 0 | 0 | 1 | 649 | 648 | 0 | 0 | 0 | 1 |
| NC_000016.10 | Chr16 | 509 | 508 | 0 | 0 | 1 | 0 | 509 | 508 | 0 | 0 | 1 | 0 |
| NC_000017.11 | Chr17 | 552 | 537 | 0 | 0 | 1 | 14 | 552 | 537 | 0 | 0 | 1 | 14 |
| NC_000018.10 | Chr18 | 623 | 621 | 0 | 0 | 2 | 0 | 623 | 621 | 0 | 0 | 2 | 0 |
| NC_000019.10 | Chr19 | 346 | 337 | 0 | 0 | 0 | 9 | 346 | 337 | 0 | 0 | 0 | 9 |
| NC_000020.11 | Chr20 | 406 | 392 | 0 | 0 | 10 | 4 | 406 | 392 | 0 | 0 | 10 | 4 |
| NC_000021.9 | Chr21 | 307 | 300 | 0 | 0 | 5 | 2 | 307 | 300 | 0 | 0 | 5 | 2 |
| NC_000022.11 | Chr22 | 244 | 238 | 0 | 0 | 3 | 3 | 244 | 238 | 0 | 0 | 3 | 3 |
| NC_000023.11 | ChrX | 682 | 557 | 0 | 0 | 0 | 125 | 682 | 557 | 0 | 0 | 0 | 125 |
| NC_000024.10 | ChrY | 41 | 41 | 0 | 0 | 0 | 0 | 41 | 41 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- IndiGEN_2021
- Size:
- 1,021
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|
| IND1012 | IND1012 | India | Not reported |
| IND100 | IND100 | India | Not reported |
| IND1007 | IND1007 | India | Not reported |
| IND148 | IND148 | India | Not reported |
| IND1018 | IND1018 | India | Not reported |
| IND116 | IND116 | India | Not reported |
| IND150 | IND150 | India | Not reported |
| IND1013 | IND1013 | India | Not reported |
| IND15 | IND15 | India | Not reported |
| IND131 | IND131 | India | Not reported |
| IND122 | IND122 | India | Not reported |
| IND156 | IND156 | India | Not reported |
| IND161 | IND161 | India | Not reported |
| IND14 | IND14 | India | Not reported |
| IND146 | IND146 | India | Not reported |
| IND1003 | IND1003 | India | Not reported |
| IND112 | IND112 | India | Not reported |
| IND144 | IND144 | India | Not reported |
| IND121 | IND121 | India | Not reported |
| IND157 | IND157 | India | Not reported |
| IND104 | IND104 | India | Not reported |
| IND118 | IND118 | India | Not reported |
| IND1016 | IND1016 | India | Not reported |
| IND1005 | IND1005 | India | Not reported |
| IND109 | IND109 | India | Not reported |
| IND152 | IND152 | India | Not reported |
| IND12 | IND12 | India | Not reported |
| IND113 | IND113 | India | Not reported |
| IND153 | IND153 | India | Not reported |
| IND149 | IND149 | India | Not reported |
| IND124 | IND124 | India | Not reported |
| IND134 | IND134 | India | Not reported |
| IND1014 | IND1014 | India | Not reported |
| IND1002 | IND1002 | India | Not reported |
| IND1009 | IND1009 | India | Not reported |
| IND165 | IND165 | India | Not reported |
| IND120 | IND120 | India | Not reported |
| IND110 | IND110 | India | Not reported |
| IND119 | IND119 | India | Not reported |
| IND168 | IND168 | India | Not reported |
| IND158 | IND158 | India | Not reported |
| IND137 | IND137 | India | Not reported |
| IND162 | IND162 | India | Not reported |
| IND135 | IND135 | India | Not reported |
| IND1008 | IND1008 | India | Not reported |
| IND16 | IND16 | India | Not reported |
| IND160 | IND160 | India | Not reported |
| IND151 | IND151 | India | Not reported |
| IND1011 | IND1011 | India | Not reported |
| IND167 | IND167 | India | Not reported |
| IND164 | IND164 | India | Not reported |
| IND133 | IND133 | India | Not reported |
| IND139 | IND139 | India | Not reported |
| IND1020 | IND1020 | India | Not reported |
| IND136 | IND136 | India | Not reported |
| IND111 | IND111 | India | Not reported |
| IND159 | IND159 | India | Not reported |
| IND1019 | IND1019 | India | Not reported |
| IND129 | IND129 | India | Not reported |
| IND125 | IND125 | India | Not reported |
| IND140 | IND140 | India | Not reported |
| IND115 | IND115 | India | Not reported |
| IND108 | IND108 | India | Not reported |
| IND138 | IND138 | India | Not reported |
| IND128 | IND128 | India | Not reported |
| IND163 | IND163 | India | Not reported |
| IND142 | IND142 | India | Not reported |
| IND126 | IND126 | India | Not reported |
| IND105 | IND105 | India | Not reported |
| IND155 | IND155 | India | Not reported |
| IND106 | IND106 | India | Not reported |
| IND130 | IND130 | India | Not reported |
| IND103 | IND103 | India | Not reported |
| IND154 | IND154 | India | Not reported |
| IND1004 | IND1004 | India | Not reported |
| IND166 | IND166 | India | Not reported |
| IND117 | IND117 | India | Not reported |
| IND1010 | IND1010 | India | Not reported |
| IND107 | IND107 | India | Not reported |
| IND1021 | IND1021 | India | Not reported |
| IND1001 | IND1001 | India | Not reported |
| IND141 | IND141 | India | Not reported |
| IND13 | IND13 | India | Not reported |
| IND1015 | IND1015 | India | Not reported |
| IND1017 | IND1017 | India | Not reported |
| IND1000 | IND1000 | India | Not reported |
| IND145 | IND145 | India | Not reported |
| IND127 | IND127 | India | Not reported |
| IND1 | IND1 | India | Not reported |
| IND11 | IND11 | India | Not reported |
| IND102 | IND102 | India | Not reported |
| IND147 | IND147 | India | Not reported |
| IND143 | IND143 | India | Not reported |
| IND169 | IND169 | India | Not reported |
| IND1006 | IND1006 | India | Not reported |
| IND123 | IND123 | India | Not reported |
| IND10 | IND10 | India | Not reported |
| IND114 | IND114 | India | Not reported |
| IND101 | IND101 | India | Not reported |
| IND132 | IND132 | India | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Split read mapping | 21,981 |