U.S. flag

An official website of the United States government

nstd223 (Sedlazeck et al. 2020)

Organism:
Human
Study Type:
Control Set
Submitter:
Fritz Sedlazeck
Submitter version:
v0.1
Description:
Aggregate SVs from WES of ~35,000 individuals in the Centers for Common Disease Genomics (CCDG). See bioRxiv preprint: [https://www.biorxiv.org/content/10.1101/2020.05.02.074096v1]. See Variant Summary counts for nstd223 in dbVar Variant Summary.

Detailed Information: Download 304482 Variant Regions, Download 304495 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr124,91324,915SubmittedNC_000001.11
NC_000002.12Chr224,61024,610SubmittedNC_000002.12
NC_000003.12Chr319,86219,862SubmittedNC_000003.12
NC_000004.12Chr422,15022,150SubmittedNC_000004.12
NC_000005.10Chr519,05219,052SubmittedNC_000005.10
NC_000006.12Chr618,69518,696SubmittedNC_000006.12
NC_000007.14Chr719,94019,940SubmittedNC_000007.14
NC_000008.11Chr815,53715,537SubmittedNC_000008.11
NC_000009.12Chr913,18113,182SubmittedNC_000009.12
NC_000010.11Chr1013,38813,388SubmittedNC_000010.11
NC_000011.10Chr1115,38115,384SubmittedNC_000011.10
NC_000012.12Chr1215,35215,352SubmittedNC_000012.12
NC_000013.11Chr1312,84312,846SubmittedNC_000013.11
NC_000014.9Chr1410,98210,982SubmittedNC_000014.9
NC_000015.10Chr158,8268,827SubmittedNC_000015.10
NC_000016.10Chr169,3989,398SubmittedNC_000016.10
NC_000017.11Chr179,5049,504SubmittedNC_000017.11
NC_000018.10Chr188,1768,176SubmittedNC_000018.10
NC_000019.10Chr198,8348,834SubmittedNC_000019.10
NC_000020.11Chr205,6495,650SubmittedNC_000020.11
NC_000021.9Chr214,6074,607SubmittedNC_000021.9
NC_000022.11Chr223,6023,603SubmittedNC_000022.11
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr124,69924,701RemappedNC_000001.10
NC_000002.11Chr224,55924,559RemappedNC_000002.11
NC_000003.11Chr319,83819,838RemappedNC_000003.11
NC_000004.11Chr422,16422,164RemappedNC_000004.11
NC_000005.9Chr519,05619,056RemappedNC_000005.9
NC_000006.11Chr618,51818,519RemappedNC_000006.11
NC_000007.13Chr719,61219,612RemappedNC_000007.13
NC_000008.10Chr815,45215,452RemappedNC_000008.10
NC_000009.11Chr913,03613,037RemappedNC_000009.11
NC_000010.10Chr1013,22313,223RemappedNC_000010.10
NC_000011.9Chr1115,35115,354RemappedNC_000011.9
NC_000012.11Chr1215,34915,349RemappedNC_000012.11
NC_000013.10Chr1312,76712,770RemappedNC_000013.10
NC_000014.8Chr1410,61710,617RemappedNC_000014.8
NC_000015.9Chr158,7268,727RemappedNC_000015.9
NC_000016.9Chr169,0599,059RemappedNC_000016.9
NC_000017.10Chr179,1999,199RemappedNC_000017.10
NC_000018.9Chr188,1698,169RemappedNC_000018.9
NC_000019.9Chr198,3908,390RemappedNC_000019.9
NC_000020.10Chr205,4575,458RemappedNC_000020.10
NC_000021.8Chr214,5664,566RemappedNC_000021.8
NC_000022.10Chr223,4733,474RemappedNC_000022.10
NC_000024.9ChrY2121RemappedNC_000024.9
NT_167216.1Unplaced|NT_167216.133RemappedNT_167216.1
NT_167227.1Unplaced|NT_167227.111RemappedNT_167227.1
NT_113889.1Unplaced|NT_113889.122RemappedNT_113889.1
NT_167226.1Unplaced|NT_167226.144RemappedNT_167226.1
NT_167229.1Unplaced|NT_167229.133RemappedNT_167229.1
NT_167223.1Unplaced|NT_167223.111RemappedNT_167223.1
NT_167233.1Unplaced|NT_167233.133RemappedNT_167233.1
NT_167207.1Chr1|NT_167207.155RemappedNT_167207.1
NW_003315903.1Chr1|NW_003315903.155RemappedNW_003315903.1
NW_003315904.1Chr1|NW_003315904.11212RemappedNW_003315904.1
NW_003571030.1Chr1|NW_003571030.11313RemappedNW_003571030.1
NW_003871055.3Chr1|NW_003871055.3649649RemappedNW_003871055.3
NW_003871056.3Chr1|NW_003871056.35656RemappedNW_003871056.3
NW_003871057.1Chr1|NW_003871057.14141RemappedNW_003871057.1
NW_004070863.1Chr1|NW_004070863.122RemappedNW_004070863.1
NW_004070864.2Chr1|NW_004070864.233RemappedNW_004070864.2
NW_004070865.1Chr1|NW_004070865.199RemappedNW_004070865.1
NW_003571031.1Chr2|NW_003571031.155RemappedNW_003571031.1
NW_004504299.1Chr2|NW_004504299.13838RemappedNW_004504299.1
NW_003315910.1Chr3|NW_003315910.12323RemappedNW_003315910.1
NW_003315911.1Chr3|NW_003315911.199RemappedNW_003315911.1
NW_003315912.1Chr3|NW_003315912.111RemappedNW_003315912.1
NW_003871058.1Chr3|NW_003871058.14141RemappedNW_003871058.1
NW_003871059.1Chr3|NW_003871059.199RemappedNW_003871059.1
NW_003871060.1Chr3|NW_003871060.188RemappedNW_003871060.1
NW_004775426.1Chr3|NW_004775426.12626RemappedNW_004775426.1
NT_113885.1Chr4|NT_113885.144RemappedNT_113885.1
NT_113888.1Chr4|NT_113888.133RemappedNT_113888.1
NT_167250.1Chr4|NT_167250.111RemappedNT_167250.1
NW_003315916.1Chr4|NW_003315916.11313RemappedNW_003315916.1
NW_003571034.1Chr4|NW_003571034.11111RemappedNW_003571034.1
NW_003571035.1Chr4|NW_003571035.12323RemappedNW_003571035.1
NW_004775427.1Chr4|NW_004775427.19393RemappedNW_004775427.1
NW_003871061.1Chr5|NW_003871061.12828RemappedNW_003871061.1
NW_004775428.1Chr5|NW_004775428.1122122RemappedNW_004775428.1
NT_167246.1Chr6|NT_167246.11414RemappedNT_167246.1
NT_167248.1Chr6|NT_167248.11414RemappedNT_167248.1
NT_167249.1Chr6|NT_167249.144RemappedNT_167249.1
NW_003871062.1Chr6|NW_003871062.12727RemappedNW_003871062.1
NW_004070866.1Chr6|NW_004070866.15050RemappedNW_004070866.1
NW_004504300.1Chr6|NW_004504300.19090RemappedNW_004504300.1
NW_004775429.1Chr6|NW_004775429.188RemappedNW_004775429.1
NW_003571037.1Chr7|NW_003571037.13535RemappedNW_003571037.1
NW_003571038.1Chr7|NW_003571038.13636RemappedNW_003571038.1
NW_003571039.1Chr7|NW_003571039.12525RemappedNW_003571039.1
NW_003571040.1Chr7|NW_003571040.19090RemappedNW_003571040.1
NW_003571041.1Chr7|NW_003571041.13232RemappedNW_003571041.1
NW_003871064.1Chr7|NW_003871064.1462462RemappedNW_003871064.1
NW_003871065.1Chr7|NW_003871065.15252RemappedNW_003871065.1
NW_004775430.1Chr7|NW_004775430.16262RemappedNW_004775430.1
NW_003315923.1Chr8|NW_003315923.13838RemappedNW_003315923.1
NW_003315924.1Chr8|NW_003315924.11818RemappedNW_003315924.1
NW_003571042.1Chr8|NW_003571042.16464RemappedNW_003571042.1
NW_003871066.2Chr8|NW_003871066.266RemappedNW_003871066.2
NW_004775431.1Chr8|NW_004775431.12020RemappedNW_004775431.1
NT_113914.1Chr9|NT_113914.144RemappedNT_113914.1
NT_113916.2Chr9|NT_113916.23030RemappedNT_113916.2
NW_003315925.1Chr9|NW_003315925.13535RemappedNW_003315925.1
NW_003315926.1Chr9|NW_003315926.177RemappedNW_003315926.1
NW_003315927.1Chr9|NW_003315927.144RemappedNW_003315927.1
NW_003871067.1Chr9|NW_003871067.11616RemappedNW_003871067.1
NW_004070867.1Chr9|NW_004070867.122RemappedNW_004070867.1
NW_004070868.1Chr9|NW_004070868.11111RemappedNW_004070868.1
NW_004070869.1Chr9|NW_004070869.11818RemappedNW_004070869.1
NW_004504301.1Chr9|NW_004504301.11212RemappedNW_004504301.1
NW_003315932.1Chr10|NW_003315932.13333RemappedNW_003315932.1
NW_003315933.1Chr10|NW_003315933.11111RemappedNW_003315933.1
NW_003571043.1Chr10|NW_003571043.12424RemappedNW_003571043.1
NW_003871068.1Chr10|NW_003871068.1270270RemappedNW_003871068.1
NW_003871069.1Chr10|NW_003871069.11111RemappedNW_003871069.1
NW_003871070.1Chr10|NW_003871070.199RemappedNW_003871070.1
NW_003871071.1Chr10|NW_003871071.14949RemappedNW_003871071.1
NW_004070870.1Chr10|NW_004070870.12121RemappedNW_004070870.1
NW_004504302.1Chr10|NW_004504302.13232RemappedNW_004504302.1
NW_004775432.1Chr10|NW_004775432.1122122RemappedNW_004775432.1
NT_113921.2Chr11|NT_113921.222RemappedNT_113921.2
NW_003571045.1Chr11|NW_003571045.13939RemappedNW_003571045.1
NW_003571046.1Chr11|NW_003571046.12222RemappedNW_003571046.1
NW_003871072.2Chr11|NW_003871072.24848RemappedNW_003871072.2
NW_003871075.1Chr11|NW_003871075.13737RemappedNW_003871075.1
NW_003871076.1Chr11|NW_003871076.11515RemappedNW_003871076.1
NW_003871077.1Chr11|NW_003871077.11111RemappedNW_003871077.1
NW_003871078.1Chr11|NW_003871078.13535RemappedNW_003871078.1
NW_003871079.1Chr11|NW_003871079.12121RemappedNW_003871079.1
NW_003871080.1Chr11|NW_003871080.12020RemappedNW_003871080.1
NW_003871081.1Chr11|NW_003871081.144RemappedNW_003871081.1
NW_003871082.1Chr11|NW_003871082.11414RemappedNW_003871082.1
NW_004070871.1Chr11|NW_004070871.14646RemappedNW_004070871.1
NW_003315937.1Chr12|NW_003315937.12424RemappedNW_003315937.1
NW_003571048.1Chr12|NW_003571048.11414RemappedNW_003571048.1
NW_003871083.2Chr12|NW_003871083.22222RemappedNW_003871083.2
NW_004504303.2Chr12|NW_004504303.24747RemappedNW_004504303.2
NW_003571051.1Chr13|NW_003571051.155RemappedNW_003571051.1
NW_004166863.1Chr14|NW_004166863.1394394RemappedNW_004166863.1
NW_003871084.1Chr15|NW_003871084.13535RemappedNW_003871084.1
NW_003871085.1Chr16|NW_003871085.155RemappedNW_003871085.1
NT_113941.1Chr17|NT_113941.111RemappedNT_113941.1
NT_113943.1Chr17|NT_113943.177RemappedNT_113943.1
NW_003315947.1Chr17|NW_003315947.16767RemappedNW_003315947.1
NW_003315948.2Chr17|NW_003315948.277RemappedNW_003315948.2
NW_003315949.1Chr17|NW_003315949.15757RemappedNW_003315949.1
NW_003315950.2Chr17|NW_003315950.2159159RemappedNW_003315950.2
NW_003315951.1Chr17|NW_003315951.166RemappedNW_003315951.1
NW_003315953.1Chr17|NW_003315953.111RemappedNW_003315953.1
NW_003571052.1Chr17|NW_003571052.14141RemappedNW_003571052.1
NW_003871087.1Chr17|NW_003871087.12626RemappedNW_003871087.1
NW_003871088.1Chr17|NW_003871088.17272RemappedNW_003871088.1
NW_003871089.1Chr17|NW_003871089.14343RemappedNW_003871089.1
NW_003871090.1Chr17|NW_003871090.11414RemappedNW_003871090.1
NW_004070872.2Chr17|NW_004070872.24646RemappedNW_004070872.2
NW_004166864.2Chr17|NW_004166864.22020RemappedNW_004166864.2
NW_004775433.1Chr17|NW_004775433.111RemappedNW_004775433.1
NW_003571053.2Chr19|NW_003571053.2176176RemappedNW_003571053.2
NW_003871094.1Chr19|NW_003871094.12020RemappedNW_003871094.1
NW_004166865.1Chr19|NW_004166865.1433433RemappedNW_004166865.1
NW_004775434.1Chr19|NW_004775434.16060RemappedNW_004775434.1
NW_003571063.2Chr20|NW_003571063.21010RemappedNW_003571063.2
NW_003871095.1Chr20|NW_003871095.144RemappedNW_003871095.1
NW_004504304.1Chr20|NW_004504304.14040RemappedNW_004504304.1
NW_003315968.1Chr21|NW_003315968.12727RemappedNW_003315968.1
NW_003315970.1Chr21|NW_003315970.111RemappedNW_003315970.1
NW_004775435.1Chr21|NW_004775435.14747RemappedNW_004775435.1
NT_113961.1Chr22|NT_113961.13232RemappedNT_113961.1
NW_003315972.1Chr22|NW_003315972.122RemappedNW_003315972.1
NW_003871096.1Chr22|NW_003871096.12121RemappedNW_003871096.1
NW_004070876.1Chr22|NW_004070876.133RemappedNW_004070876.1
NT_167212.1Chr22|NT_167212.133RemappedNT_167212.1
NT_167234.1Chr22|NT_167234.111RemappedNT_167234.1

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.11Chr124,91323,995251632657824,91523,9972516326578
NC_000002.12Chr224,61024,13230964604524,61024,132309646045
NC_000003.12Chr319,86219,640972069919,86219,6409720699
NC_000004.12Chr422,15021,952488513722,15021,9524885137
NC_000005.10Chr519,05218,8385310115019,05218,83853101150
NC_000006.12Chr618,69518,291974212214318,69618,2929742122143
NC_000007.14Chr719,94018,7122319822167819,94018,71223198221678
NC_000008.11Chr815,53715,2981392766715,53715,29813927667
NC_000009.12Chr913,18112,8916373708413,18212,89263737084
NC_000010.11Chr1013,38812,88533161743713,38812,885331617437
NC_000011.10Chr1115,38114,95383251830215,38414,956832518302
NC_000012.12Chr1215,35215,209316110515,35215,2093161105
NC_000013.11Chr1312,84312,720291378312,84612,7232913783
NC_000014.9Chr1410,98210,7681057623110,98210,76810576231
NC_000015.10Chr158,8268,6215810102358,8278,622581010235
NC_000016.10Chr169,3988,949823732469,3988,94982373246
NC_000017.11Chr179,5049,0521373542769,5049,052137354276
NC_000018.10Chr188,1768,146197408,1768,14619740
NC_000019.10Chr198,8348,3731762292548,8348,373176229254
NC_000020.11Chr205,6495,3558427140435,6505,356842714043
NC_000021.9Chr214,6074,434981017484,6074,43498101748
NC_000022.11Chr223,6023,2641995758243,6033,265199575824

Samplesets

Number of Samplesets: 1

Sampleset Type:
Control
Size:
19,652 (sample data not available)
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported

Experimental Details

Experiment IDTypeMethodAnalysisNumber of Variant Calls
1DiscoverySequencingSequence alignment304,495

Validations

No validation data were submitted for this study.

Support Center