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nstd225 (Xiao et al. 2022)

Organism:
Human
Study Type:
Collection
Submitter:
Jun Xiao
Description:
Background: Hereditary diffuse gastric cancer(HDGC) is a kind of malignant gastric cancer that is difficult to find in the early stage. However, this late onset and Incomplete penetrance hereditary cancer, its prenatal diagnosis has rarely been reported previously. We report the case of a CDH1 deletion in a fetus with family history of HDGC. Case presentation: A 26-years-old woman was referred to genetic counseling for an ultrasonography of fetal choroid plexus cyst at 17 weeks of gestation. The ultrasono graphic evaluation showed bilateral choroid plexus cysts(CPC) in the lateral ventricles, and the women showed a familial history of gastric cancer and breast cancer. Trio copy number sequencing identified a pathogenic CDH1 deletion in the fetus and unaffected mother. The CDH1 deletion was found in three of the five family members tested, segregation among affected family members. The couple finally decided to terminate the pregnancy after genetic counseling by hospital geneticists due to the uncertainty of the fetal choroid from the cyst and the occurrence of HDGC in the future. See Variant Summary counts for nstd225 in dbVar Variant Summary.

Detailed Information: Download 1 Variant Region, Download 1 Variant Call, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000016.10Chr1611RemappedNC_000016.10
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000016.9Chr1611SubmittedNC_000016.9

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000016.9Chr16110000110000

Samplesets

Number of Samplesets: 1

Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID Subject Phenotype
    CNV08586CNV08586Not reported

    Experimental Details

    Experiment IDTypeMethodAnalysisNumber of Variant Calls
    1DiscoverySequencingRead depth and paired-end mapping1

    Validations

    No validation data were submitted for this study.

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