nstd227 (Kikas et al. 2022)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Triin Kikas
- Description:
- The study hypothesized that large CNVs predispose to spermatogenic failure (SPGF) through increased chromosomal instability or altered gene dosage. The study included DNA from blood samples of 215 idiopathic SPGF cases (total sperm count <39 million per ejaculate) and 62 controls. We performed CNV calling based on genome-wide genotyping dataset (Illumina HumanOmniExpress-24-v1 BeadChip) by applying three algorithms, QuantiSNP, GADA (Genome Alteration Detection Algorithm) and CNstream in parallel. The acquired CNV calls were merged with HD-CNV (Hotspot Detector for Copy Number Variants) program and only the CNVs predicted by at least two programs, were considered in subsequent analysis. See Variant Summary counts for nstd227 in dbVar Variant Summary.
- Publication(s):
- Kikas et al. 2023
Detailed Information: Download 1242 Variant Regions, Download 2069 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p14 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 88 | 127 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 93 | 164 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 106 | 244 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 53 | 96 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 57 | 115 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 65 | 97 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 76 | 90 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 67 | 115 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 52 | 113 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 62 | 112 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 52 | 88 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 66 | 98 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 49 | 84 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 51 | 74 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 62 | 90 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 38 | 66 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 35 | 72 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 22 | 49 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 40 | 45 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 21 | 35 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 16 | 18 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 29 | 33 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 40 | 42 | Remapped | NC_000023.11 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 3 | Remapped | NT_187516.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 7 | 21 | Remapped | NT_187523.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 7 | 21 | Remapped | NT_187647.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 1 | Remapped | NW_019805489.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 1 | Remapped | NT_187542.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 2 | 2 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 1 | 1 | Remapped | NT_187546.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 8 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 1 | 1 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 8 | Remapped | NW_003315917.2 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 5 | 6 | Remapped | NT_187558.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 1 | 1 | Remapped | NT_187561.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 1 | 1 | Remapped | NW_018654714.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 2 | Remapped | NW_019805493.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 2 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 1 | 1 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 1 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 1 | 1 | Remapped | NW_015148966.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 13 | 25 | Remapped | NT_187587.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 13 | Remapped | NW_018654718.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 1 | 1 | Remapped | NT_187592.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 3 | 8 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 5 | 5 | Remapped | NT_187660.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 2 | Remapped | NW_017852933.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 10 | 41 | Remapped | NT_187663.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 2 | 3 | Remapped | NW_019805503.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 4 | 4 | Remapped | NW_003315962.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 1 | 1 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 5 | 6 | Remapped | NT_187653.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 3 | 3 | Remapped | NT_187576.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 1 | Remapped | NT_187661.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 6 | 10 | Remapped | NT_187600.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 1 | Remapped | NT_187603.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 5 | 5 | Remapped | NW_011332701.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 2 | 2 | Remapped | NT_187614.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 89 | 128 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 93 | 164 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 106 | 244 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 53 | 96 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 57 | 115 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 65 | 97 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 76 | 90 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 67 | 115 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 52 | 113 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 62 | 112 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 52 | 88 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 66 | 98 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 49 | 84 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 51 | 74 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 62 | 90 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 38 | 66 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 35 | 72 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 22 | 49 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 40 | 45 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 21 | 35 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 16 | 18 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 29 | 33 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 41 | 43 | Submitted | NC_000023.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 89 | 82 | 5 | 0 | 1 | 1 | 128 | 117 | 7 | 0 | 1 | 3 |
| NC_000002.11 | Chr2 | 93 | 74 | 9 | 3 | 0 | 7 | 164 | 119 | 21 | 3 | 0 | 21 |
| NC_000003.11 | Chr3 | 106 | 95 | 9 | 0 | 0 | 2 | 244 | 231 | 11 | 0 | 0 | 2 |
| NC_000004.11 | Chr4 | 53 | 49 | 1 | 0 | 0 | 3 | 96 | 92 | 1 | 0 | 0 | 3 |
| NC_000005.9 | Chr5 | 57 | 52 | 2 | 0 | 0 | 3 | 115 | 103 | 2 | 0 | 0 | 10 |
| NC_000006.11 | Chr6 | 65 | 62 | 1 | 0 | 0 | 2 | 97 | 94 | 1 | 0 | 0 | 2 |
| NC_000007.13 | Chr7 | 76 | 64 | 3 | 0 | 0 | 9 | 90 | 72 | 7 | 0 | 0 | 11 |
| NC_000008.10 | Chr8 | 67 | 54 | 5 | 0 | 0 | 8 | 115 | 101 | 5 | 0 | 0 | 9 |
| NC_000009.11 | Chr9 | 52 | 50 | 0 | 0 | 0 | 2 | 113 | 111 | 0 | 0 | 0 | 2 |
| NC_000010.10 | Chr10 | 62 | 57 | 0 | 5 | 0 | 0 | 112 | 103 | 0 | 9 | 0 | 0 |
| NC_000011.9 | Chr11 | 52 | 50 | 1 | 0 | 0 | 1 | 88 | 86 | 1 | 0 | 0 | 1 |
| NC_000012.11 | Chr12 | 66 | 52 | 0 | 0 | 0 | 14 | 98 | 60 | 0 | 0 | 0 | 38 |
| NC_000013.10 | Chr13 | 49 | 47 | 0 | 1 | 0 | 1 | 84 | 82 | 0 | 1 | 0 | 1 |
| NC_000014.8 | Chr14 | 51 | 30 | 11 | 1 | 0 | 9 | 74 | 41 | 12 | 3 | 0 | 18 |
| NC_000015.9 | Chr15 | 62 | 48 | 5 | 3 | 0 | 6 | 90 | 72 | 9 | 3 | 0 | 6 |
| NC_000016.9 | Chr16 | 38 | 33 | 0 | 3 | 0 | 2 | 66 | 52 | 0 | 12 | 0 | 2 |
| NC_000017.10 | Chr17 | 35 | 21 | 1 | 0 | 0 | 13 | 72 | 27 | 1 | 0 | 0 | 44 |
| NC_000018.9 | Chr18 | 22 | 20 | 0 | 0 | 0 | 2 | 49 | 46 | 0 | 0 | 0 | 3 |
| NC_000019.9 | Chr19 | 40 | 35 | 1 | 0 | 0 | 4 | 45 | 40 | 1 | 0 | 0 | 4 |
| NC_000020.10 | Chr20 | 21 | 21 | 0 | 0 | 0 | 0 | 35 | 35 | 0 | 0 | 0 | 0 |
| NC_000021.8 | Chr21 | 16 | 12 | 4 | 0 | 0 | 0 | 18 | 13 | 5 | 0 | 0 | 0 |
| NC_000022.10 | Chr22 | 29 | 20 | 8 | 1 | 0 | 0 | 33 | 23 | 8 | 2 | 0 | 0 |
| NC_000023.10 | ChrX | 41 | 25 | 9 | 6 | 1 | 0 | 43 | 25 | 11 | 6 | 1 | 0 |
Samplesets
Number of Samplesets: 4
- Sampleset ID:
- 1
- Name:
- Normozoospermic men
- Sampleset Type:
- Control
- Description:
- blood DNA samples from men with normal sperm count (>39 million per ejaculate)
- Size:
- 62
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| NORM49 | NORM49 | Male | Estonia | Not reported |
| NORM42 | NORM42 | Male | Estonia | Not reported |
| NORM14 | NORM14 | Male | Estonia | Not reported |
| NORM1 | NORM1 | Male | Estonia | Not reported |
| NORM21 | NORM21 | Male | Estonia | Not reported |
| NORM41 | NORM41 | Male | Estonia | Not reported |
| NORM28 | NORM28 | Male | Estonia | Not reported |
| NORM30 | NORM30 | Male | Estonia | Not reported |
| NORM36 | NORM36 | Male | Estonia | Not reported |
| NORM59 | NORM59 | Male | Estonia | Not reported |
| NORM4 | NORM4 | Male | Estonia | Not reported |
| NORM15 | NORM15 | Male | Estonia | Not reported |
| NORM23 | NORM23 | Male | Estonia | Not reported |
| NORM2 | NORM2 | Male | Estonia | Not reported |
| NORM7 | NORM7 | Male | Estonia | Not reported |
| NORM22 | NORM22 | Male | Estonia | Not reported |
| NORM10 | NORM10 | Male | Estonia | Not reported |
| NORM60 | NORM60 | Male | Estonia | Not reported |
| NORM50 | NORM50 | Male | Estonia | Not reported |
| NORM56 | NORM56 | Male | Estonia | Not reported |
| NORM48 | NORM48 | Male | Estonia | Not reported |
| NORM52 | NORM52 | Male | Estonia | Not reported |
| NORM16 | NORM16 | Male | Estonia | Not reported |
| NORM8 | NORM8 | Male | Estonia | Not reported |
| NORM26 | NORM26 | Male | Estonia | Not reported |
| NORM54 | NORM54 | Male | Estonia | Not reported |
| NORM18 | NORM18 | Male | Estonia | Not reported |
| NORM25 | NORM25 | Male | Estonia | Not reported |
| NORM38 | NORM38 | Male | Estonia | Not reported |
| NORM3 | NORM3 | Male | Estonia | Not reported |
| NORM12 | NORM12 | Male | Estonia | Not reported |
| NORM6 | NORM6 | Male | Estonia | Not reported |
| NORM17 | NORM17 | Male | Estonia | Not reported |
| NORM37 | NORM37 | Male | Estonia | Not reported |
| NORM47 | NORM47 | Male | Estonia | Not reported |
| NORM40 | NORM40 | Male | Estonia | Not reported |
| NORM58 | NORM58 | Male | Estonia | Not reported |
| NORM11 | NORM11 | Male | Estonia | Not reported |
| NORM5 | NORM5 | Male | Estonia | Not reported |
| NORM34 | NORM34 | Male | Estonia | Not reported |
| NORM45 | NORM45 | Male | Estonia | Not reported |
| NORM32 | NORM32 | Male | Estonia | Not reported |
| NORM46 | NORM46 | Male | Estonia | Not reported |
| NORM44 | NORM44 | Male | Estonia | Not reported |
| NORM29 | NORM29 | Male | Estonia | Not reported |
| NORM51 | NORM51 | Male | Estonia | Not reported |
| NORM39 | NORM39 | Male | Estonia | Not reported |
| NORM20 | NORM20 | Male | Estonia | Not reported |
| NORM31 | NORM31 | Male | Estonia | Not reported |
| NORM9 | NORM9 | Male | Estonia | Not reported |
| NORM43 | NORM43 | Male | Estonia | Not reported |
| NORM55 | NORM55 | Male | Estonia | Not reported |
| NORM13 | NORM13 | Male | Estonia | Not reported |
| NORM33 | NORM33 | Male | Estonia | Not reported |
| NORM27 | NORM27 | Male | Estonia | Not reported |
| NORM62 | NORM62 | Male | Estonia | Not reported |
| NORM53 | NORM53 | Male | Estonia | Not reported |
| NORM35 | NORM35 | Male | Estonia | Not reported |
| NORM24 | NORM24 | Male | Estonia | Not reported |
| NORM57 | NORM57 | Male | Estonia | Not reported |
| NORM61 | NORM61 | Male | Estonia | Not reported |
| NORM19 | NORM19 | Male | Estonia | Not reported |
- Sampleset ID:
- 2
- Name:
- Non-obstructive azoospermia
- Sampleset Type:
- Case
- Description:
- blood DNA samples from men who lack sperm in their ejaculate
- Size:
- 73
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Male infertility
Non-obstructive azoospermia - Sex:
- Male
- Sampleset ID:
- 3
- Name:
- Severe oligozoospermia
- Sampleset Type:
- Case
- Description:
- blood DNA samples from men with very low sperm count (>0 and <10 million per ejaculate)
- Size:
- 84
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Male infertility
- Sex:
- Male
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| SO77 | SO77 | Male | Estonia | male infertility |
| SO10 | SO10 | Male | Estonia | male infertility |
| SO11 | SO11 | Male | Estonia | male infertility |
| SO28 | SO28 | Male | Estonia | male infertility |
| SO80 | SO80 | Male | Estonia | male infertility |
| SO56 | SO56 | Male | Estonia | male infertility |
| SO29 | SO29 | Male | Estonia | male infertility |
| SO65 | SO65 | Male | Estonia | male infertility |
| SO43 | SO43 | Male | Estonia | male infertility |
| SO7 | SO7 | Male | Estonia | male infertility |
| SO24 | SO24 | Male | Estonia | male infertility |
| SO8 | SO8 | Male | Estonia | male infertility |
| SO69 | SO69 | Male | Estonia | male infertility |
| SO30 | SO30 | Male | Estonia | male infertility |
| SO2 | SO2 | Male | Estonia | male infertility |
| SO83 | SO83 | Male | Estonia | male infertility |
| SO70 | SO70 | Male | Estonia | male infertility |
| SO53 | SO53 | Male | Estonia | male infertility |
| SO4 | SO4 | Male | Estonia | male infertility |
| SO36 | SO36 | Male | Estonia | male infertility |
| SO74 | SO74 | Male | Estonia | male infertility |
| SO54 | SO54 | Male | Estonia | male infertility |
| SO3 | SO3 | Male | Estonia | male infertility |
| SO22 | SO22 | Male | Estonia | male infertility |
| SO51 | SO51 | Male | Estonia | male infertility |
| SO42 | SO42 | Male | Estonia | male infertility |
| SO75 | SO75 | Male | Estonia | male infertility |
| SO73 | SO73 | Male | Estonia | male infertility |
| SO31 | SO31 | Male | Estonia | male infertility |
| SO23 | SO23 | Male | Estonia | male infertility |
| SO40 | SO40 | Male | Estonia | male infertility |
| SO84 | SO84 | Male | Estonia | male infertility |
| SO1 | SO1 | Male | Estonia | male infertility |
| SO55 | SO55 | Male | Estonia | male infertility |
| SO57 | SO57 | Male | Estonia | male infertility |
| SO21 | SO21 | Male | Estonia | male infertility |
| SO50 | SO50 | Male | Estonia | male infertility |
| SO47 | SO47 | Male | Estonia | male infertility |
| SO82 | SO82 | Male | Estonia | male infertility |
| SO76 | SO76 | Male | Estonia | male infertility |
| SO48 | SO48 | Male | Estonia | male infertility |
| SO9 | SO9 | Male | Estonia | male infertility |
| SO32 | SO32 | Male | Estonia | male infertility |
| SO5 | SO5 | Male | Estonia | male infertility |
| SO72 | SO72 | Male | Estonia | male infertility |
| SO45 | SO45 | Male | Estonia | male infertility |
| SO38 | SO38 | Male | Estonia | male infertility |
| SO68 | SO68 | Male | Estonia | male infertility |
| SO41 | SO41 | Male | Estonia | male infertility |
| SO63 | SO63 | Male | Estonia | male infertility |
| SO20 | SO20 | Male | Estonia | male infertility |
| SO15 | SO15 | Male | Estonia | male infertility |
| SO14 | SO14 | Male | Estonia | male infertility |
| SO35 | SO35 | Male | Estonia | male infertility |
| SO81 | SO81 | Male | Estonia | male infertility |
| SO19 | SO19 | Male | Estonia | male infertility |
| SO66 | SO66 | Male | Estonia | male infertility |
| SO49 | SO49 | Male | Estonia | male infertility |
| SO34 | SO34 | Male | Estonia | male infertility |
| SO16 | SO16 | Male | Estonia | male infertility |
| SO59 | SO59 | Male | Estonia | male infertility |
| SO39 | SO39 | Male | Estonia | male infertility |
| SO17 | SO17 | Male | Estonia | male infertility |
| SO18 | SO18 | Male | Estonia | male infertility |
| SO62 | SO62 | Male | Estonia | male infertility |
| SO60 | SO60 | Male | Estonia | male infertility |
| SO58 | SO58 | Male | Estonia | male infertility |
| SO25 | SO25 | Male | Estonia | male infertility |
| SO52 | SO52 | Male | Estonia | male infertility |
| SO12 | SO12 | Male | Estonia | male infertility |
| SO79 | SO79 | Male | Estonia | male infertility |
| SO64 | SO64 | Male | Estonia | male infertility |
| SO78 | SO78 | Male | Estonia | male infertility |
| SO44 | SO44 | Male | Estonia | male infertility |
| SO6 | SO6 | Male | Estonia | male infertility |
| SO13 | SO13 | Male | Estonia | male infertility |
| SO46 | SO46 | Male | Estonia | male infertility |
| SO67 | SO67 | Male | Estonia | male infertility |
| SO61 | SO61 | Male | Estonia | male infertility |
| SO37 | SO37 | Male | Estonia | male infertility |
| SO33 | SO33 | Male | Estonia | male infertility |
| SO27 | SO27 | Male | Estonia | male infertility |
| SO71 | SO71 | Male | Estonia | male infertility |
| SO26 | SO26 | Male | Estonia | male infertility |
- Sampleset ID:
- 4
- Name:
- Moderate oligozoospermia
- Sampleset Type:
- Case
- Description:
- blood DNA samples from men with low sperm count (>10 and <39 million per ejaculate)
- Size:
- 58
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Male infertility
- Sex:
- Male
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| MO47 | MO47 | Male | Estonia | male infertility |
| MO41 | MO41 | Male | Estonia | male infertility |
| MO34 | MO34 | Male | Estonia | male infertility |
| MO19 | MO19 | Male | Estonia | male infertility |
| MO18 | MO18 | Male | Estonia | male infertility |
| MO37 | MO37 | Male | Estonia | male infertility |
| MO32 | MO32 | Male | Estonia | male infertility |
| MO28 | MO28 | Male | Estonia | male infertility |
| MO26 | MO26 | Male | Estonia | male infertility |
| MO5 | MO5 | Male | Estonia | male infertility |
| MO6 | MO6 | Male | Estonia | male infertility |
| MO49 | MO49 | Male | Estonia | male infertility |
| MO53 | MO53 | Male | Estonia | male infertility |
| MO25 | MO25 | Male | Estonia | male infertility |
| MO35 | MO35 | Male | Estonia | male infertility |
| MO12 | MO12 | Male | Estonia | male infertility |
| MO7 | MO7 | Male | Estonia | male infertility |
| MO51 | MO51 | Male | Estonia | male infertility |
| MO11 | MO11 | Male | Estonia | male infertility |
| MO13 | MO13 | Male | Estonia | male infertility |
| MO46 | MO46 | Male | Estonia | male infertility |
| MO43 | MO43 | Male | Estonia | male infertility |
| MO15 | MO15 | Male | Estonia | male infertility |
| MO3 | MO3 | Male | Estonia | male infertility |
| MO44 | MO44 | Male | Estonia | male infertility |
| MO4 | MO4 | Male | Estonia | male infertility |
| MO38 | MO38 | Male | Estonia | male infertility |
| MO23 | MO23 | Male | Estonia | male infertility |
| MO33 | MO33 | Male | Estonia | male infertility |
| MO9 | MO9 | Male | Estonia | male infertility |
| MO56 | MO56 | Male | Estonia | male infertility |
| MO24 | MO24 | Male | Estonia | male infertility |
| MO52 | MO52 | Male | Estonia | male infertility |
| MO14 | MO14 | Male | Estonia | male infertility |
| MO2 | MO2 | Male | Estonia | male infertility |
| MO27 | MO27 | Male | Estonia | male infertility |
| MO42 | MO42 | Male | Estonia | male infertility |
| MO58 | MO58 | Male | Estonia | male infertility |
| MO1 | MO1 | Male | Estonia | male infertility |
| MO31 | MO31 | Male | Estonia | male infertility |
| MO48 | MO48 | Male | Estonia | male infertility |
| MO30 | MO30 | Male | Estonia | male infertility |
| MO55 | MO55 | Male | Estonia | male infertility |
| MO39 | MO39 | Male | Estonia | male infertility |
| MO17 | MO17 | Male | Estonia | male infertility |
| MO8 | MO8 | Male | Estonia | male infertility |
| MO16 | MO16 | Male | Estonia | male infertility |
| MO54 | MO54 | Male | Estonia | male infertility |
| MO20 | MO20 | Male | Estonia | male infertility |
| MO10 | MO10 | Male | Estonia | male infertility |
| MO40 | MO40 | Male | Estonia | male infertility |
| MO45 | MO45 | Male | Estonia | male infertility |
| MO57 | MO57 | Male | Estonia | male infertility |
| MO22 | MO22 | Male | Estonia | male infertility |
| MO21 | MO21 | Male | Estonia | male infertility |
| MO29 | MO29 | Male | Estonia | male infertility |
| MO50 | MO50 | Male | Estonia | male infertility |
| MO36 | MO36 | Male | Estonia | male infertility |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | SNP array | Probe signal intensity | Illumina HumanOmniExpress Beadchip | 2,026 |
| 2 | Discovery | SNP array | Probe signal intensity | Illumina HumanOmniExpress Beadchip | 43 |